CsaV3_6G048330 (gene) Cucumber (Chinese Long) v3

NameCsaV3_6G048330
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionCytoplasmic tRNA 2-thiolation protein 1
Locationchr6 : 28371535 .. 28371828 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTTAAGAGGGCTGCTTCATTCAGTAAGTTATCTTCTTGGGAACCCAAATGAGGCCCATGCCTATGGTGAAGAGAGAAGTTCAAAAGGGAAAAAGGGTTATGAAGAATTATGCAATTCTGGGTTTCAAATGCCTCTTCATTACCCTCGCTACAAGAAGTCGGATTATCAGAAGATGGAGGAGTGGAAGCTGGATCTCCTTCTCAAAGAATATGGCTTGAGTTTTGAAGGCAGTTTGGAGGAGAAGAGGGCCTTTGCAATGGGTGCATTTTTATGGCCTGATCAGAATTGA

mRNA sequence

ATGGATTTAAGAGGGCTGCTTCATTCAGTAAGTTATCTTCTTGGGAACCCAAATGAGGCCCATGCCTATGGTGAAGAGAGAAGTTCAAAAGGGAAAAAGGGTTATGAAGAATTATGCAATTCTGGGTTTCAAATGCCTCTTCATTACCCTCGCTACAAGAAGTCGGATTATCAGAAGATGGAGGAGTGGAAGCTGGATCTCCTTCTCAAAGAATATGGCTTGAGTTTTGAAGGCAGTTTGGAGGAGAAGAGGGCCTTTGCAATGGGTGCATTTTTATGGCCTGATCAGAATTGA

Coding sequence (CDS)

ATGGATTTAAGAGGGCTGCTTCATTCAGTAAGTTATCTTCTTGGGAACCCAAATGAGGCCCATGCCTATGGTGAAGAGAGAAGTTCAAAAGGGAAAAAGGGTTATGAAGAATTATGCAATTCTGGGTTTCAAATGCCTCTTCATTACCCTCGCTACAAGAAGTCGGATTATCAGAAGATGGAGGAGTGGAAGCTGGATCTCCTTCTCAAAGAATATGGCTTGAGTTTTGAAGGCAGTTTGGAGGAGAAGAGGGCCTTTGCAATGGGTGCATTTTTATGGCCTGATCAGAATTGA

Protein sequence

MDLRGLLHSVSYLLGNPNEAHAYGEERSSKGKKGYEELCNSGFQMPLHYPRYKKSDYQKMEEWKLDLLLKEYGLSFEGSLEEKRAFAMGAFLWPDQN
BLAST of CsaV3_6G048330 vs. NCBI nr
Match: XP_011658113.1 (PREDICTED: uncharacterized protein LOC105435946 [Cucumis sativus] >KGN49041.1 hypothetical protein Csa_6G511080 [Cucumis sativus])

HSP 1 Score: 206.8 bits (525), Expect = 3.3e-50
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0

Query: 1  MDLRGLLHSVSYLLGNPNEAHAYGEERSSKGKKGYEELCNSGFQMPLHYPRYKKSDYQKM 60
          MDLRGLLHSVSYLLGNPNEAHAYGEERSSKGKKGYEELCNSGFQMPLHYPRYKKSDYQKM
Sbjct: 1  MDLRGLLHSVSYLLGNPNEAHAYGEERSSKGKKGYEELCNSGFQMPLHYPRYKKSDYQKM 60

Query: 61 EEWKLDLLLKEYGLSFEGSLEEKRAFAMGAFLWPDQN 98
          EEWKLDLLLKEYGLSFEGSLEEKRAFAMGAFLWPDQN
Sbjct: 61 EEWKLDLLLKEYGLSFEGSLEEKRAFAMGAFLWPDQN 97

BLAST of CsaV3_6G048330 vs. NCBI nr
Match: XP_022132797.1 (uncharacterized protein LOC111005569 [Momordica charantia])

HSP 1 Score: 141.7 bits (356), Expect = 1.3e-30
Identity = 73/106 (68.87%), Postives = 80/106 (75.47%), Query Frame = 0

Query: 1   MDLRGLLHSVSYLLGNPNEAHAYG--------EERSSKGKKGYEELCN--SGFQMPLHYP 60
           M L+ LLHS  YLL   NE HA          EER  KGKKG EE+CN  SGFQMPLHYP
Sbjct: 3   MALKWLLHSACYLL---NEVHACANGGVKTSDEERIPKGKKGCEEICNSASGFQMPLHYP 62

Query: 61  RYKKSDYQKMEEWKLDLLLKEYGLSFEGSLEEKRAFAMGAFLWPDQ 97
           RY K+DYQKMEEW++DLLL +YG+ FEGSLEEKRAFAMGAFLWPDQ
Sbjct: 63  RYNKADYQKMEEWEVDLLLNQYGMGFEGSLEEKRAFAMGAFLWPDQ 105

BLAST of CsaV3_6G048330 vs. NCBI nr
Match: XP_021294941.1 (uncharacterized protein LOC110424651 [Herrania umbratica])

HSP 1 Score: 120.9 bits (302), Expect = 2.4e-24
Identity = 64/120 (53.33%), Postives = 78/120 (65.00%), Query Frame = 0

Query: 1   MDLRGLLHSVSYLLGNP------------------NEAHAYGEERSSKGKKGYE------ 60
           M LR  +HS  ++LG P                   E H+ G  RSSK   G +      
Sbjct: 1   MALRWFVHSACHVLGYPKDDHPSHLQHCNNMGSYQKEGHSGGVIRSSKVSNGEQLSTQTA 60

Query: 61  ELCNSGFQMPLHYPRYKKSDYQKMEEWKLDLLLKEYGLSFEGSLEEKRAFAMGAFLWPDQ 97
           E+  SGFQMPLHYPRY K+DYQKMEEWK+D+LL+EYGLSF+G+L+EKRA+AMGAFLWPDQ
Sbjct: 61  EMHLSGFQMPLHYPRYTKADYQKMEEWKVDVLLREYGLSFKGTLDEKRAYAMGAFLWPDQ 120

BLAST of CsaV3_6G048330 vs. NCBI nr
Match: XP_007026334.2 (PREDICTED: uncharacterized protein LOC18597318 [Theobroma cacao])

HSP 1 Score: 120.2 bits (300), Expect = 4.0e-24
Identity = 65/120 (54.17%), Postives = 79/120 (65.83%), Query Frame = 0

Query: 1   MDLRGLLHSVSYLLG-----NPN-------------EAHAYGEERSSKGKKGYE------ 60
           M LR  +HS  ++LG     +PN             E H+ G  RSSK   G +      
Sbjct: 1   MALRWFVHSACHVLGYLKDDHPNHLQHCNNMESYQKEGHSGGVIRSSKVSNGEQVSTQTA 60

Query: 61  ELCNSGFQMPLHYPRYKKSDYQKMEEWKLDLLLKEYGLSFEGSLEEKRAFAMGAFLWPDQ 97
           E+  SGFQMPLHYPRY K+DY+KMEEWKLD+LL+EYGLSF G+L+EKRA+AMGAFLWPDQ
Sbjct: 61  EMHLSGFQMPLHYPRYTKADYEKMEEWKLDMLLREYGLSFRGNLDEKRAYAMGAFLWPDQ 120

BLAST of CsaV3_6G048330 vs. NCBI nr
Match: EOY28956.1 (Uncharacterized protein TCM_030413 [Theobroma cacao])

HSP 1 Score: 119.8 bits (299), Expect = 5.2e-24
Identity = 63/120 (52.50%), Postives = 77/120 (64.17%), Query Frame = 0

Query: 1   MDLRGLLHSVSYLLGNP------------------NEAHAYGEERSSKGKKGYE------ 60
           M LR  +HS  ++LG P                   E H+ G  RSSK   G +      
Sbjct: 1   MALRWFVHSACHVLGYPKDDHPNHLQHCNNMESYQKEGHSGGVIRSSKVSNGEQVSTQTA 60

Query: 61  ELCNSGFQMPLHYPRYKKSDYQKMEEWKLDLLLKEYGLSFEGSLEEKRAFAMGAFLWPDQ 97
           E+  SGFQMPLHYPRY K+DY+KMEEWK+D+LL+EYGLSF G+L+EKRA+AMGAFLWPDQ
Sbjct: 61  EMHLSGFQMPLHYPRYTKADYEKMEEWKVDMLLREYGLSFRGNLDEKRAYAMGAFLWPDQ 120

BLAST of CsaV3_6G048330 vs. TAIR10
Match: AT5G55620.1 (unknown protein)

HSP 1 Score: 94.0 bits (232), Expect = 5.6e-20
Identity = 40/56 (71.43%), Postives = 50/56 (89.29%), Query Frame = 0

Query: 41  SGFQMPLHYPRYKKSDYQKMEEWKLDLLLKEYGLSFEGSLEEKRAFAMGAFLWPDQ 97
           SGFQ+PLHYP+Y KSDY+ M++ +LDLLLK+YG SFEGSLE+KR FA+ +FLWPDQ
Sbjct: 45  SGFQVPLHYPKYSKSDYEVMDDLRLDLLLKQYGFSFEGSLEDKRVFAIESFLWPDQ 100

BLAST of CsaV3_6G048330 vs. TAIR10
Match: AT5G41761.1 (unknown protein)

HSP 1 Score: 86.3 bits (212), Expect = 1.2e-17
Identity = 43/84 (51.19%), Postives = 55/84 (65.48%), Query Frame = 0

Query: 18 NEAHAYGE----ERSSKGKKGYEELCNSGFQMPLHYPRYKKSDYQKMEEWKLDLLLKEYG 77
          N +H  GE    E ++K      +  +S FQ+PLHYP+Y KSDY+KM EW+LD LL+EYG
Sbjct: 16 NRSHQDGEDQRNETATKINHDKPQNQSSSFQIPLHYPKYTKSDYEKMPEWQLDRLLREYG 75

Query: 78 LSFEGSLEEKRAFAMGAFLWPDQN 98
          L   G   EKR FA+GAFLW  +N
Sbjct: 76 LPVIGDSYEKRKFAIGAFLWSSEN 99

BLAST of CsaV3_6G048330 vs. TAIR10
Match: AT3G09950.1 (unknown protein)

HSP 1 Score: 85.5 bits (210), Expect = 2.0e-17
Identity = 42/77 (54.55%), Postives = 54/77 (70.13%), Query Frame = 0

Query: 21 HAYGEER-SSKGKKGYEELCNSGFQMPLHYPRYKKSDYQKMEEWKLDLLLKEYGL--SFE 80
          HA  +E   +  K G  +  +SGF+MPLHYPRY K DY++MEEW+LDLLL EYGL    +
Sbjct: 13 HAKNQESVENLDKNGAVKAPSSGFKMPLHYPRYTKEDYEEMEEWRLDLLLSEYGLLAFHD 72

Query: 81 GSLEEKRAFAMGAFLWP 95
           +L EKRAFA+  F+WP
Sbjct: 73 NTLHEKRAFAIDTFIWP 89

BLAST of CsaV3_6G048330 vs. TAIR10
Match: AT3G55570.1 (unknown protein)

HSP 1 Score: 79.3 bits (194), Expect = 1.4e-15
Identity = 40/78 (51.28%), Postives = 47/78 (60.26%), Query Frame = 0

Query: 16 NPNEAHAYGEERSSKGKKGYEELCNSGFQMPLHYPRYKKSDYQKMEEWKLDLLLKEYGLS 75
          N      Y +  + K  +G      S F+MPLHYPRY K DYQ M EWKLD +L +YGLS
Sbjct: 11 NKGNEEVYMDVENGKNGEG------SVFRMPLHYPRYSKEDYQDMPEWKLDRVLADYGLS 70

Query: 76 FEGSLEEKRAFAMGAFLW 94
            G L  KR FA+GAFLW
Sbjct: 71 TYGDLAHKRDFAIGAFLW 82

BLAST of CsaV3_6G048330 vs. TAIR10
Match: AT3G11405.1 (unknown protein)

HSP 1 Score: 60.1 bits (144), Expect = 9.0e-10
Identity = 31/54 (57.41%), Postives = 36/54 (66.67%), Query Frame = 0

Query: 41  SGFQMPLHYPRYKKSDYQKMEEWKLDLLLKEYGLSFE-GSLEEKRAFAMGAFLW 94
           S FQMPL YP Y K  Y  M E +LD LLK YGL  + G+L  K+ FA+GAFLW
Sbjct: 55  SSFQMPLQYPNYAKEQYDIMSEEELDRLLKLYGLPTDIGNLSCKKEFAVGAFLW 108

BLAST of CsaV3_6G048330 vs. TrEMBL
Match: tr|A0A0A0KMW8|A0A0A0KMW8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511080 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 2.2e-50
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0

Query: 1  MDLRGLLHSVSYLLGNPNEAHAYGEERSSKGKKGYEELCNSGFQMPLHYPRYKKSDYQKM 60
          MDLRGLLHSVSYLLGNPNEAHAYGEERSSKGKKGYEELCNSGFQMPLHYPRYKKSDYQKM
Sbjct: 1  MDLRGLLHSVSYLLGNPNEAHAYGEERSSKGKKGYEELCNSGFQMPLHYPRYKKSDYQKM 60

Query: 61 EEWKLDLLLKEYGLSFEGSLEEKRAFAMGAFLWPDQN 98
          EEWKLDLLLKEYGLSFEGSLEEKRAFAMGAFLWPDQN
Sbjct: 61 EEWKLDLLLKEYGLSFEGSLEEKRAFAMGAFLWPDQN 97

BLAST of CsaV3_6G048330 vs. TrEMBL
Match: tr|A0A2N9EZP3|A0A2N9EZP3_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS8195 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.7e-24
Identity = 57/99 (57.58%), Postives = 74/99 (74.75%), Query Frame = 0

Query: 1  MDLRGLLHSVSYLLGNPNEAHAYGEERSSKGKKG---YEELCNSGFQMPLHYPRYKKSDY 60
          M L  L+HS  ++LG P + +     +S K   G    +E+  SGFQMPLHYPRY K+DY
Sbjct: 1  MALSWLIHSACHVLGTPKDTNIQCHVKSLKVPNGGLPSKEMNPSGFQMPLHYPRYNKADY 60

Query: 61 QKMEEWKLDLLLKEYGLSFEGSLEEKRAFAMGAFLWPDQ 97
          +KMEEWK+DLLLK+YGL+F+G+L+EKRA+AMGAFLWP Q
Sbjct: 61 EKMEEWKVDLLLKQYGLNFKGNLDEKRAYAMGAFLWPGQ 99

BLAST of CsaV3_6G048330 vs. TrEMBL
Match: tr|A0A061GHA6|A0A061GHA6_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_030413 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 3.5e-24
Identity = 63/120 (52.50%), Postives = 77/120 (64.17%), Query Frame = 0

Query: 1   MDLRGLLHSVSYLLGNP------------------NEAHAYGEERSSKGKKGYE------ 60
           M LR  +HS  ++LG P                   E H+ G  RSSK   G +      
Sbjct: 1   MALRWFVHSACHVLGYPKDDHPNHLQHCNNMESYQKEGHSGGVIRSSKVSNGEQVSTQTA 60

Query: 61  ELCNSGFQMPLHYPRYKKSDYQKMEEWKLDLLLKEYGLSFEGSLEEKRAFAMGAFLWPDQ 97
           E+  SGFQMPLHYPRY K+DY+KMEEWK+D+LL+EYGLSF G+L+EKRA+AMGAFLWPDQ
Sbjct: 61  EMHLSGFQMPLHYPRYTKADYEKMEEWKVDMLLREYGLSFRGNLDEKRAYAMGAFLWPDQ 120

BLAST of CsaV3_6G048330 vs. TrEMBL
Match: tr|I1MFQ9|I1MFQ9_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=102663856 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 2.9e-23
Identity = 63/116 (54.31%), Postives = 78/116 (67.24%), Query Frame = 0

Query: 1   MDLRGLLHSVSYLLGNPN-----------EAHA-YGEERSSKG---KKGYEELCN----S 60
           M LR +LHS  ++LG P            E ++  GE +S KG      + E+      S
Sbjct: 1   MALRWVLHSACHVLGYPTRNIEEEECKKIEGYSNIGEAKSVKGLSLSNNFNEVDQCYPCS 60

Query: 61  GFQMPLHYPRYKKSDYQKMEEWKLDLLLKEYGLSFEGSLEEKRAFAMGAFLWPDQN 98
           GFQMPLHYPRY K DY+ MEEWK+DLLLK+YGLSF+G+L+EKRAFAMGAFLWPDQ+
Sbjct: 61  GFQMPLHYPRYTKQDYESMEEWKVDLLLKQYGLSFKGTLDEKRAFAMGAFLWPDQD 116

BLAST of CsaV3_6G048330 vs. TrEMBL
Match: tr|B9SA77|B9SA77_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0863040 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 5.0e-23
Identity = 61/116 (52.59%), Postives = 74/116 (63.79%), Query Frame = 0

Query: 1   MDLRGLLHSVSYLLGNPNE----------------AHAYGEERSSKG----KKGYEELCN 60
           M LR LLHS  ++LG PN                  HA G  +S K     +   E   +
Sbjct: 1   MALRWLLHSACHVLGYPNNEASYRQXXXXXXXXXXXHANGVMKSGKPIAEMEVKMETYPS 60

Query: 61  SGFQMPLHYPRYKKSDYQKMEEWKLDLLLKEYGLSFEGSLEEKRAFAMGAFLWPDQ 97
            GFQ+PLHYPRY K+DYQKMEEW++D+LL+EYGLS +G+LEEKRAFAMG FLWPDQ
Sbjct: 61  GGFQLPLHYPRYTKTDYQKMEEWRVDMLLREYGLSIKGTLEEKRAFAMGTFLWPDQ 116

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_011658113.13.3e-50100.00PREDICTED: uncharacterized protein LOC105435946 [Cucumis sativus] >KGN49041.1 hy... [more]
XP_022132797.11.3e-3068.87uncharacterized protein LOC111005569 [Momordica charantia][more]
XP_021294941.12.4e-2453.33uncharacterized protein LOC110424651 [Herrania umbratica][more]
XP_007026334.24.0e-2454.17PREDICTED: uncharacterized protein LOC18597318 [Theobroma cacao][more]
EOY28956.15.2e-2452.50Uncharacterized protein TCM_030413 [Theobroma cacao][more]
Match NameE-valueIdentityDescription
AT5G55620.15.6e-2071.43unknown protein[more]
AT5G41761.11.2e-1751.19unknown protein[more]
AT3G09950.12.0e-1754.55unknown protein[more]
AT3G55570.11.4e-1551.28unknown protein[more]
AT3G11405.19.0e-1057.41unknown protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0KMW8|A0A0A0KMW8_CUCSA2.2e-50100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511080 PE=4 SV=1[more]
tr|A0A2N9EZP3|A0A2N9EZP3_FAGSY2.7e-2457.58Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS8195 PE=4 SV=1[more]
tr|A0A061GHA6|A0A061GHA6_THECC3.5e-2452.50Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_030413 PE=4 SV=1[more]
tr|I1MFQ9|I1MFQ9_SOYBN2.9e-2354.31Uncharacterized protein OS=Glycine max OX=3847 GN=102663856 PE=4 SV=1[more]
tr|B9SA77|B9SA77_RICCO5.0e-2352.59Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0863040 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G048330.1CsaV3_6G048330.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33513:SF2SUBFAMILY NOT NAMEDcoord: 3..96
NoneNo IPR availablePANTHERPTHR33513FAMILY NOT NAMEDcoord: 3..96

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_6G048330Watermelon (97103) v2cucwmbB432
CsaV3_6G048330Cucumber (Chinese Long) v3cuccucB053
CsaV3_6G048330Silver-seed gourdcarcucB0442
CsaV3_6G048330Silver-seed gourdcarcucB0674
CsaV3_6G048330Cucumber (Gy14) v2cgybcucB046
CsaV3_6G048330Cucumber (Gy14) v2cgybcucB298
CsaV3_6G048330Cucurbita maxima (Rimu)cmacucB0509
CsaV3_6G048330Cucurbita pepo (Zucchini)cpecucB0654
CsaV3_6G048330Wild cucumber (PI 183967)cpicucB052
CsaV3_6G048330Bottle gourd (USVL1VR-Ls)cuclsiB470