Lsi01G004930 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi01G004930
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionCytoplasmic tRNA 2-thiolation protein 1
Locationchr01 : 4059883 .. 4060176 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTTAAGATGGCTGCTTCATTCAACAAGTTATCTTCTTGGGAACCCAAATGAGGTCCATGGCTATGGTGAAGAGAGAAGTCCAAAAGGGAAAAGGGGTTGTGAAGAAATATGCACTTCTGGGTTTCAAATGCCTCTTCATTACCCTCGCTACAAGAAAGCAGATTACGAGAAGATGGAGGAGTGGAAGCTTGATCTCCTGCTCAAGGAATATGGCTTGAGTTTTCAAGGCAGTTTGGAGGAGAAGAGGGCCTTTGCTATGGGTGCATTTCTATGGCCTGATCAGATTTGA

mRNA sequence

ATGGCTTTAAGATGGCTGCTTCATTCAACAAGTTATCTTCTTGGGAACCCAAATGAGGTCCATGGCTATGGTGAAGAGAGAAGTCCAAAAGGGAAAAGGGGTTGTGAAGAAATATGCACTTCTGGGTTTCAAATGCCTCTTCATTACCCTCGCTACAAGAAAGCAGATTACGAGAAGATGGAGGAGTGGAAGCTTGATCTCCTGCTCAAGGAATATGGCTTGAGTTTTCAAGGCAGTTTGGAGGAGAAGAGGGCCTTTGCTATGGGTGCATTTCTATGGCCTGATCAGATTTGA

Coding sequence (CDS)

ATGGCTTTAAGATGGCTGCTTCATTCAACAAGTTATCTTCTTGGGAACCCAAATGAGGTCCATGGCTATGGTGAAGAGAGAAGTCCAAAAGGGAAAAGGGGTTGTGAAGAAATATGCACTTCTGGGTTTCAAATGCCTCTTCATTACCCTCGCTACAAGAAAGCAGATTACGAGAAGATGGAGGAGTGGAAGCTTGATCTCCTGCTCAAGGAATATGGCTTGAGTTTTCAAGGCAGTTTGGAGGAGAAGAGGGCCTTTGCTATGGGTGCATTTCTATGGCCTGATCAGATTTGA

Protein sequence

MALRWLLHSTSYLLGNPNEVHGYGEERSPKGKRGCEEICTSGFQMPLHYPRYKKADYEKMEEWKLDLLLKEYGLSFQGSLEEKRAFAMGAFLWPDQI
BLAST of Lsi01G004930 vs. TrEMBL
Match: A0A0A0KMW8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511080 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 3.1e-43
Identity = 83/96 (86.46%), Postives = 88/96 (91.67%), Query Frame = 1

Query: 1  MALRWLLHSTSYLLGNPNEVHGYGEERSPKGKRGCEEICTSGFQMPLHYPRYKKADYEKM 60
          M LR LLHS SYLLGNPNE H YGEERS KGK+G EE+C SGFQMPLHYPRYKK+DY+KM
Sbjct: 1  MDLRGLLHSVSYLLGNPNEAHAYGEERSSKGKKGYEELCNSGFQMPLHYPRYKKSDYQKM 60

Query: 61 EEWKLDLLLKEYGLSFQGSLEEKRAFAMGAFLWPDQ 97
          EEWKLDLLLKEYGLSF+GSLEEKRAFAMGAFLWPDQ
Sbjct: 61 EEWKLDLLLKEYGLSFEGSLEEKRAFAMGAFLWPDQ 96

BLAST of Lsi01G004930 vs. TrEMBL
Match: I1MFQ9_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_15G117600 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 4.0e-27
Identity = 68/115 (59.13%), Postives = 80/115 (69.57%), Query Frame = 1

Query: 1   MALRWLLHSTSYLLGNPN---------EVHGY---GEERSPKG---KRGCEEI--C--TS 60
           MALRW+LHS  ++LG P          ++ GY   GE +S KG        E+  C   S
Sbjct: 1   MALRWVLHSACHVLGYPTRNIEEEECKKIEGYSNIGEAKSVKGLSLSNNFNEVDQCYPCS 60

Query: 61  GFQMPLHYPRYKKADYEKMEEWKLDLLLKEYGLSFQGSLEEKRAFAMGAFLWPDQ 97
           GFQMPLHYPRY K DYE MEEWK+DLLLK+YGLSF+G+L+EKRAFAMGAFLWPDQ
Sbjct: 61  GFQMPLHYPRYTKQDYESMEEWKVDLLLKQYGLSFKGTLDEKRAFAMGAFLWPDQ 115

BLAST of Lsi01G004930 vs. TrEMBL
Match: A0A0B2RLN7_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_009934 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 5.2e-27
Identity = 68/115 (59.13%), Postives = 80/115 (69.57%), Query Frame = 1

Query: 1   MALRWLLHSTSYLLGNPN---------EVHGY---GEERSPKG---KRGCEEI--C--TS 60
           MALRW+LHS  ++LG P          ++ GY   GE +S KG        E+  C   S
Sbjct: 1   MALRWVLHSACHVLGYPTRNIEEEECKKIEGYSNIGEAKSVKGLSLANNFNEVDQCYPCS 60

Query: 61  GFQMPLHYPRYKKADYEKMEEWKLDLLLKEYGLSFQGSLEEKRAFAMGAFLWPDQ 97
           GFQMPLHYPRY K DYE MEEWK+DLLLK+YGLSF+G+L+EKRAFAMGAFLWPDQ
Sbjct: 61  GFQMPLHYPRYTKQDYESMEEWKVDLLLKQYGLSFKGTLDEKRAFAMGAFLWPDQ 115

BLAST of Lsi01G004930 vs. TrEMBL
Match: A0A067GFM8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g045350mg PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 6.8e-27
Identity = 63/117 (53.85%), Postives = 77/117 (65.81%), Query Frame = 1

Query: 1   MALRWLLHSTSYLLGNPNE-------VHGY--------------GEERSPKGKRGCEEIC 60
           MALRW+LH+  ++LG+ N+       V GY               + +   G     E C
Sbjct: 1   MALRWVLHTACHVLGHQNDNKIECNGVVGYQNDHHHQVQVNGVSSDSKVSDGLSQSVEAC 60

Query: 61  TSGFQMPLHYPRYKKADYEKMEEWKLDLLLKEYGLSFQGSLEEKRAFAMGAFLWPDQ 97
            SGFQ+PLHYPRY KADYEKME+WKLD+LL+EYGL FQG+ +EKRAFAMGAFLWPDQ
Sbjct: 61  ASGFQLPLHYPRYSKADYEKMEDWKLDMLLREYGLCFQGTPDEKRAFAMGAFLWPDQ 117

BLAST of Lsi01G004930 vs. TrEMBL
Match: A0A061GHA6_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_030413 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 8.9e-27
Identity = 67/121 (55.37%), Postives = 79/121 (65.29%), Query Frame = 1

Query: 1   MALRWLLHSTSYLLGNPN------------------EVHGYGEERSPKGKRGCEEICT-- 60
           MALRW +HS  ++LG P                   E H  G  RS K   G E++ T  
Sbjct: 1   MALRWFVHSACHVLGYPKDDHPNHLQHCNNMESYQKEGHSGGVIRSSKVSNG-EQVSTQT 60

Query: 61  -----SGFQMPLHYPRYKKADYEKMEEWKLDLLLKEYGLSFQGSLEEKRAFAMGAFLWPD 97
                SGFQMPLHYPRY KADYEKMEEWK+D+LL+EYGLSF+G+L+EKRA+AMGAFLWPD
Sbjct: 61  AEMHLSGFQMPLHYPRYTKADYEKMEEWKVDMLLREYGLSFRGNLDEKRAYAMGAFLWPD 120

BLAST of Lsi01G004930 vs. TAIR10
Match: AT5G55620.1 (AT5G55620.1 unknown protein)

HSP 1 Score: 94.0 bits (232), Expect = 5.5e-20
Identity = 39/57 (68.42%), Postives = 51/57 (89.47%), Query Frame = 1

Query: 41  SGFQMPLHYPRYKKADYEKMEEWKLDLLLKEYGLSFQGSLEEKRAFAMGAFLWPDQI 98
           SGFQ+PLHYP+Y K+DYE M++ +LDLLLK+YG SF+GSLE+KR FA+ +FLWPDQ+
Sbjct: 45  SGFQVPLHYPKYSKSDYEVMDDLRLDLLLKQYGFSFEGSLEDKRVFAIESFLWPDQL 101

BLAST of Lsi01G004930 vs. TAIR10
Match: AT3G09950.1 (AT3G09950.1 unknown protein)

HSP 1 Score: 86.7 bits (213), Expect = 8.8e-18
Identity = 40/65 (61.54%), Postives = 48/65 (73.85%), Query Frame = 1

Query: 32 KRGCEEICTSGFQMPLHYPRYKKADYEKMEEWKLDLLLKEYGL--SFQGSLEEKRAFAMG 91
          K G  +  +SGF+MPLHYPRY K DYE+MEEW+LDLLL EYGL      +L EKRAFA+ 
Sbjct: 25 KNGAVKAPSSGFKMPLHYPRYTKEDYEEMEEWRLDLLLSEYGLLAFHDNTLHEKRAFAID 84

Query: 92 AFLWP 95
           F+WP
Sbjct: 85 TFIWP 89

BLAST of Lsi01G004930 vs. TAIR10
Match: AT5G41761.1 (AT5G41761.1 unknown protein)

HSP 1 Score: 82.8 bits (203), Expect = 1.3e-16
Identity = 36/57 (63.16%), Postives = 44/57 (77.19%), Query Frame = 1

Query: 40 TSGFQMPLHYPRYKKADYEKMEEWKLDLLLKEYGLSFQGSLEEKRAFAMGAFLWPDQ 97
          +S FQ+PLHYP+Y K+DYEKM EW+LD LL+EYGL   G   EKR FA+GAFLW  +
Sbjct: 42 SSSFQIPLHYPKYTKSDYEKMPEWQLDRLLREYGLPVIGDSYEKRKFAIGAFLWSSE 98

BLAST of Lsi01G004930 vs. TAIR10
Match: AT3G55570.1 (AT3G55570.1 unknown protein)

HSP 1 Score: 78.6 bits (192), Expect = 2.4e-15
Identity = 35/53 (66.04%), Postives = 40/53 (75.47%), Query Frame = 1

Query: 41 SGFQMPLHYPRYKKADYEKMEEWKLDLLLKEYGLSFQGSLEEKRAFAMGAFLW 94
          S F+MPLHYPRY K DY+ M EWKLD +L +YGLS  G L  KR FA+GAFLW
Sbjct: 30 SVFRMPLHYPRYSKEDYQDMPEWKLDRVLADYGLSTYGDLAHKRDFAIGAFLW 82

BLAST of Lsi01G004930 vs. TAIR10
Match: AT3G11405.1 (AT3G11405.1 unknown protein)

HSP 1 Score: 60.1 bits (144), Expect = 8.9e-10
Identity = 31/54 (57.41%), Postives = 36/54 (66.67%), Query Frame = 1

Query: 41  SGFQMPLHYPRYKKADYEKMEEWKLDLLLKEYGLSFQ-GSLEEKRAFAMGAFLW 94
           S FQMPL YP Y K  Y+ M E +LD LLK YGL    G+L  K+ FA+GAFLW
Sbjct: 55  SSFQMPLQYPNYAKEQYDIMSEEELDRLLKLYGLPTDIGNLSCKKEFAVGAFLW 108

BLAST of Lsi01G004930 vs. NCBI nr
Match: gi|778720128|ref|XP_011658113.1| (PREDICTED: uncharacterized protein LOC105435946 [Cucumis sativus])

HSP 1 Score: 182.2 bits (461), Expect = 4.4e-43
Identity = 83/96 (86.46%), Postives = 88/96 (91.67%), Query Frame = 1

Query: 1  MALRWLLHSTSYLLGNPNEVHGYGEERSPKGKRGCEEICTSGFQMPLHYPRYKKADYEKM 60
          M LR LLHS SYLLGNPNE H YGEERS KGK+G EE+C SGFQMPLHYPRYKK+DY+KM
Sbjct: 1  MDLRGLLHSVSYLLGNPNEAHAYGEERSSKGKKGYEELCNSGFQMPLHYPRYKKSDYQKM 60

Query: 61 EEWKLDLLLKEYGLSFQGSLEEKRAFAMGAFLWPDQ 97
          EEWKLDLLLKEYGLSF+GSLEEKRAFAMGAFLWPDQ
Sbjct: 61 EEWKLDLLLKEYGLSFEGSLEEKRAFAMGAFLWPDQ 96

BLAST of Lsi01G004930 vs. NCBI nr
Match: gi|571517919|ref|XP_006597610.1| (PREDICTED: uncharacterized protein LOC102663856 [Glycine max])

HSP 1 Score: 128.6 bits (322), Expect = 5.8e-27
Identity = 68/115 (59.13%), Postives = 80/115 (69.57%), Query Frame = 1

Query: 1   MALRWLLHSTSYLLGNPN---------EVHGY---GEERSPKG---KRGCEEI--C--TS 60
           MALRW+LHS  ++LG P          ++ GY   GE +S KG        E+  C   S
Sbjct: 1   MALRWVLHSACHVLGYPTRNIEEEECKKIEGYSNIGEAKSVKGLSLSNNFNEVDQCYPCS 60

Query: 61  GFQMPLHYPRYKKADYEKMEEWKLDLLLKEYGLSFQGSLEEKRAFAMGAFLWPDQ 97
           GFQMPLHYPRY K DYE MEEWK+DLLLK+YGLSF+G+L+EKRAFAMGAFLWPDQ
Sbjct: 61  GFQMPLHYPRYTKQDYESMEEWKVDLLLKQYGLSFKGTLDEKRAFAMGAFLWPDQ 115

BLAST of Lsi01G004930 vs. NCBI nr
Match: gi|734404432|gb|KHN32943.1| (hypothetical protein glysoja_009934 [Glycine soja])

HSP 1 Score: 128.3 bits (321), Expect = 7.5e-27
Identity = 68/115 (59.13%), Postives = 80/115 (69.57%), Query Frame = 1

Query: 1   MALRWLLHSTSYLLGNPN---------EVHGY---GEERSPKG---KRGCEEI--C--TS 60
           MALRW+LHS  ++LG P          ++ GY   GE +S KG        E+  C   S
Sbjct: 1   MALRWVLHSACHVLGYPTRNIEEEECKKIEGYSNIGEAKSVKGLSLANNFNEVDQCYPCS 60

Query: 61  GFQMPLHYPRYKKADYEKMEEWKLDLLLKEYGLSFQGSLEEKRAFAMGAFLWPDQ 97
           GFQMPLHYPRY K DYE MEEWK+DLLLK+YGLSF+G+L+EKRAFAMGAFLWPDQ
Sbjct: 61  GFQMPLHYPRYTKQDYESMEEWKVDLLLKQYGLSFKGTLDEKRAFAMGAFLWPDQ 115

BLAST of Lsi01G004930 vs. NCBI nr
Match: gi|641859833|gb|KDO78523.1| (hypothetical protein CISIN_1g045350mg [Citrus sinensis])

HSP 1 Score: 127.9 bits (320), Expect = 9.8e-27
Identity = 63/117 (53.85%), Postives = 77/117 (65.81%), Query Frame = 1

Query: 1   MALRWLLHSTSYLLGNPNE-------VHGY--------------GEERSPKGKRGCEEIC 60
           MALRW+LH+  ++LG+ N+       V GY               + +   G     E C
Sbjct: 1   MALRWVLHTACHVLGHQNDNKIECNGVVGYQNDHHHQVQVNGVSSDSKVSDGLSQSVEAC 60

Query: 61  TSGFQMPLHYPRYKKADYEKMEEWKLDLLLKEYGLSFQGSLEEKRAFAMGAFLWPDQ 97
            SGFQ+PLHYPRY KADYEKME+WKLD+LL+EYGL FQG+ +EKRAFAMGAFLWPDQ
Sbjct: 61  ASGFQLPLHYPRYSKADYEKMEDWKLDMLLREYGLCFQGTPDEKRAFAMGAFLWPDQ 117

BLAST of Lsi01G004930 vs. NCBI nr
Match: gi|590627017|ref|XP_007026334.1| (Uncharacterized protein TCM_030413 [Theobroma cacao])

HSP 1 Score: 127.5 bits (319), Expect = 1.3e-26
Identity = 67/121 (55.37%), Postives = 79/121 (65.29%), Query Frame = 1

Query: 1   MALRWLLHSTSYLLGNPN------------------EVHGYGEERSPKGKRGCEEICT-- 60
           MALRW +HS  ++LG P                   E H  G  RS K   G E++ T  
Sbjct: 1   MALRWFVHSACHVLGYPKDDHPNHLQHCNNMESYQKEGHSGGVIRSSKVSNG-EQVSTQT 60

Query: 61  -----SGFQMPLHYPRYKKADYEKMEEWKLDLLLKEYGLSFQGSLEEKRAFAMGAFLWPD 97
                SGFQMPLHYPRY KADYEKMEEWK+D+LL+EYGLSF+G+L+EKRA+AMGAFLWPD
Sbjct: 61  AEMHLSGFQMPLHYPRYTKADYEKMEEWKVDMLLREYGLSFRGNLDEKRAYAMGAFLWPD 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KMW8_CUCSA3.1e-4386.46Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511080 PE=4 SV=1[more]
I1MFQ9_SOYBN4.0e-2759.13Uncharacterized protein OS=Glycine max GN=GLYMA_15G117600 PE=4 SV=1[more]
A0A0B2RLN7_GLYSO5.2e-2759.13Uncharacterized protein OS=Glycine soja GN=glysoja_009934 PE=4 SV=1[more]
A0A067GFM8_CITSI6.8e-2753.85Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g045350mg PE=4 SV=1[more]
A0A061GHA6_THECC8.9e-2755.37Uncharacterized protein OS=Theobroma cacao GN=TCM_030413 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G55620.15.5e-2068.42 unknown protein[more]
AT3G09950.18.8e-1861.54 unknown protein[more]
AT5G41761.11.3e-1663.16 unknown protein[more]
AT3G55570.12.4e-1566.04 unknown protein[more]
AT3G11405.18.9e-1057.41 unknown protein[more]
Match NameE-valueIdentityDescription
gi|778720128|ref|XP_011658113.1|4.4e-4386.46PREDICTED: uncharacterized protein LOC105435946 [Cucumis sativus][more]
gi|571517919|ref|XP_006597610.1|5.8e-2759.13PREDICTED: uncharacterized protein LOC102663856 [Glycine max][more]
gi|734404432|gb|KHN32943.1|7.5e-2759.13hypothetical protein glysoja_009934 [Glycine soja][more]
gi|641859833|gb|KDO78523.1|9.8e-2753.85hypothetical protein CISIN_1g045350mg [Citrus sinensis][more]
gi|590627017|ref|XP_007026334.1|1.3e-2655.37Uncharacterized protein TCM_030413 [Theobroma cacao][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G004930.1Lsi01G004930.1mRNA


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33513FAMILY NOT NAMEDcoord: 36..96
score: 4.1
NoneNo IPR availablePANTHERPTHR33513:SF2SUBFAMILY NOT NAMEDcoord: 36..96
score: 4.1

The following gene(s) are paralogous to this gene:

None