WMU23217 (transcribed_cluster) Watermelon (97103) v1

NameWMU23217
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionCytoplasmic tRNA 2-thiolation protein 1
LocationChr1 : 30440200 .. 30440780 (-)
Sequence length591
The following sequences are available for this feature:

transcribed_cluster sequence

TGGGGCCTCTTAACTTAAAAAGAAAAGAACACTTCCCCTTCTCCCTGTTTCTCTCTGTTTCTTCTTTTGAAAGACCAGCCATGGCTTTAAGATGGCTGCTTCATTCAACAAGTTATCTTCTTAGGGAACCCCAACTGAGGTCCATGGCTATGGTGAAGAGAGAAGTTTCAAAAAGTTAAAAAGGGTTATGAAGAAATATGCACTTCTGGGTTTCAAATGCCTCTTCATTACCCCTCGCTACAACAAGGCAGATTACCAGAAGATGGAGGAGTGGAAGCTTGATCTCCTTCTCAAGGAATATGGCTTGAGTTTTCAAGGCAGTTTTGGAGGAGAAGAGGGCTTTTGCAATGGGTGCTTTTCTATGGCCTGATCAGTATTGATGCTCTTTTATCTCTCTCTCTTTCAAAATAAAGATTACTGTCTTCTGCTCTGTCATCTTCATTTTTAGGGAGAGTTGTATCCGTGCAGCTCAGCCTGTACTTGGAACGAACTCATGGTGTTGGTACCTGTTGAAAACATATTCTGTATCTGCTTTAATGGAATGTGATCTCCATACTTTTTCTGTATAATAAGAGTAAAGCTTCCTTGTTT
BLAST of WMU23217 vs. TrEMBL
Match: A0A0A0KMW8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511080 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 5.8e-09
Identity = 35/59 (59.32%), Postives = 40/59 (67.80%), Query Frame = 2

Query: 125 GTPTEVHGYGEERSFKKLKRVMKKYALLGFKCLFITPRYNKADYQKMEEWKLDLLLKEY 184
           G P E H YGEERS K  K+  ++    GF+     PRY K+DYQKMEEWKLDLLLKEY
Sbjct: 15  GNPNEAHAYGEERSSKG-KKGYEELCNSGFQMPLHYPRYKKSDYQKMEEWKLDLLLKEY 72

Query: 185 244
           
Sbjct: 75  72

Query: 245 302
           
Sbjct: 135 72

BLAST of WMU23217 vs. TrEMBL
Match: A0A0A0KMW8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511080 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 9.6e-04
Identity = 41/104 (39.42%), Postives = 50/104 (48.08%), Query Frame = 3

Query: 81  MALRWLLHSTSYLLREPQLRSMAMVKREVSKS*KGL*RNMHFWVSNASSLPLATTR---- 140
           M LR LLHS SYLL  P   + A  +   SK  KG         ++   +PL   R    
Sbjct: 1   MDLRGLLHSVSYLLGNPN-EAHAYGEERSSKGKKGY----EELCNSGFQMPLHYPRYKKS 60

Query: 141 --QITRRWRSGSLISFSRNMA*VFKAVLEEKRAFAMGAFLWPDQ 200
             Q    W+   L+   +     F+  LEEKRAFAMGAFLWPDQ
Sbjct: 61  DYQKMEEWKLDLLL---KEYGLSFEGSLEEKRAFAMGAFLWPDQ 96

Query: 201 260
           
Sbjct: 121 96

Query: 261 320
           
Sbjct: 181 96

Query: 321 375
           
Sbjct: 241 96

BLAST of WMU23217 vs. NCBI nr
Match: gi|778720128|ref|XP_011658113.1| (PREDICTED: uncharacterized protein LOC105435946 [Cucumis sativus])

HSP 1 Score: 69.3 bits (168), Expect = 8.4e-09
Identity = 35/59 (59.32%), Postives = 40/59 (67.80%), Query Frame = 2

Query: 125 GTPTEVHGYGEERSFKKLKRVMKKYALLGFKCLFITPRYNKADYQKMEEWKLDLLLKEY 184
           G P E H YGEERS K  K+  ++    GF+     PRY K+DYQKMEEWKLDLLLKEY
Sbjct: 15  GNPNEAHAYGEERSSKG-KKGYEELCNSGFQMPLHYPRYKKSDYQKMEEWKLDLLLKEY 72

Query: 185 244
           
Sbjct: 75  72

Query: 245 302
           
Sbjct: 135 72

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KMW8_CUCSA5.8e-0959.32Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511080 PE=4 SV=1[more]
A0A0A0KMW8_CUCSA9.6e-0439.42Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511080 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|778720128|ref|XP_011658113.1|8.4e-0959.32PREDICTED: uncharacterized protein LOC105435946 [Cucumis sativus][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla014392Cla014392gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S1_0005724S1_0005724EST
S1_0096240S1_0096240EST
S1_0127468S1_0127468EST
S1_0158278S1_0158278EST
S2_0032585S2_0032585EST
S2_0166720S2_0166720EST
S3_0121976S3_0121976EST