WMU65835 (transcribed_cluster) Watermelon (97103) v1

NameWMU65835
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionCytoplasmic tRNA 2-thiolation protein 1
LocationChr1 : 30440285 .. 30440767 (-)
Sequence length486
The following sequences are available for this feature:

transcribed_cluster sequence

TAAAAGAAAAGAAACAACTTACCCTTACTACCCTGTTTCTCTCTGTTCTTCTTTTGAAAGACCAGCCATGGCTTTAAGATGGCTGGCTTCATTCAACAAGTTATCTTCTTGGGAACCCAACTGAGGTCCATGGCTATGGTGAAGAGAGAAGTTCAAAAGTTAAAAAGGGTTATGAAGAAATATGCACTTCTGGGTTTCAAATGCCTCTTCATTACCCTCGCTACAACAAGGCAGATTACCAGAAGATGGAGGAGTGGAAGCTTGATCTCCTTCTCAAGGAATATGGCTTGAGTTTTCAAGGCAGTTTTGGAGGAGAAGAGGGCTTTTGCAATGGGTGCTTTTCTATGGCCTGATCAGTATTGATGCTCTTTTATCTCTCTCTCTTTCAAATAAGATTACTGTCTTCTGCTCTGTCATCTTCATTTTTAGGGAGAGTTGTATCCGTGCAGCTCAGCCTGTACTTGGACGAACTCATGGTGTTGGTAC
BLAST of WMU65835 vs. TAIR10
Match: AT3G09950.1 (AT3G09950.1 unknown protein)

HSP 1 Score: 63.9 bits (154), Expect = 1.0e-10
Identity = 27/41 (65.85%), Postives = 31/41 (75.61%), Query Frame = 3

Query: 162 KKGYEEICTSGFQMPLHYPRYNKADYQKMEEWKLDLLLKEY 221
           K G  +  +SGF+MPLHYPRY K DY++MEEW+LDLLL EY
Sbjct: 25  KNGAVKAPSSGFKMPLHYPRYTKEDYEEMEEWRLDLLLSEY 65

Query: 222 281
           
Sbjct: 85  65

Query: 282 285
           
Sbjct: 145 65

BLAST of WMU65835 vs. TAIR10
Match: AT5G41761.1 (AT5G41761.1 unknown protein)

HSP 1 Score: 58.9 bits (141), Expect = 3.3e-09
Identity = 24/47 (51.06%), Postives = 33/47 (70.21%), Query Frame = 3

Query: 144 ERSSKVKKGYEEICTSGFQMPLHYPRYNKADYQKMEEWKLDLLLKEY 203
           E ++K+     +  +S FQ+PLHYP+Y K+DY+KM EW+LD LL+EY
Sbjct: 28  ETATKINHDKPQNQSSSFQIPLHYPKYTKSDYEKMPEWQLDRLLREY 74

Query: 204 263
           
Sbjct: 88  74

Query: 264 285
           
Sbjct: 148 74

BLAST of WMU65835 vs. TAIR10
Match: AT5G55620.1 (AT5G55620.1 unknown protein)

HSP 1 Score: 56.2 bits (134), Expect = 2.1e-08
Identity = 24/46 (52.17%), Postives = 34/46 (73.91%), Query Frame = 3

Query: 147 RSSKVKKGYEEICTSGFQMPLHYPRYNKADYQKMEEWKLDLLLKEY 206
           R+  +K   +E   SGFQ+PLHYP+Y+K+DY+ M++ +LDLLLK+Y
Sbjct: 31  RNKIIKMMKKEEFPSGFQVPLHYPKYSKSDYEVMDDLRLDLLLKQY 76

Query: 207 266
           
Sbjct: 91  76

Query: 267 285
           
Sbjct: 151 76


HSP 2 Score: 33.5 bits (75), Expect = 1.5e-01
Identity = 13/21 (61.90%), Postives = 15/21 (71.43%), Query Frame = 1

Query: 295 FKAVLEEKRAFAMGAFLWPDQ 354
           F+  LE+KR FA+ +FLWPDQ
Sbjct: 80  FEGSLEDKRVFAIESFLWPDQ 100

Query: 355 358
           
Sbjct: 140 100

BLAST of WMU65835 vs. TAIR10
Match: AT3G55570.1 (AT3G55570.1 unknown protein)

HSP 1 Score: 53.1 bits (126), Expect = 1.8e-07
Identity = 22/32 (68.75%), Postives = 24/32 (75.00%), Query Frame = 3

Query: 189 SGFQMPLHYPRYNKADYQKMEEWKLDLLLKEY 248
           S F+MPLHYPRY+K DYQ M EWKLD +L +Y
Sbjct: 30  SVFRMPLHYPRYSKEDYQDMPEWKLDRVLADY 61

Query: 249 285
           
Sbjct: 90  61

BLAST of WMU65835 vs. NCBI nr
Match: gi|778720128|ref|XP_011658113.1| (PREDICTED: uncharacterized protein LOC105435946 [Cucumis sativus])

HSP 1 Score: 129.4 bits (324), Expect = 5.6e-27
Identity = 58/68 (85.29%), Postives = 60/68 (88.24%), Query Frame = 3

Query: 81  GWLHSTSYLLGNPTEVHGYGEERSSKVKKGYEEICTSGFQMPLHYPRYNKADYQKMEEWK 140
           G LHS SYLLGNP E H YGEERSSK KKGYEE+C SGFQMPLHYPRY K+DYQKMEEWK
Sbjct: 5   GLLHSVSYLLGNPNEAHAYGEERSSKGKKGYEELCNSGFQMPLHYPRYKKSDYQKMEEWK 64

Query: 141 LDLLLKEY 200
           LDLLLKEY
Sbjct: 65  LDLLLKEY 72

Query: 201 260
           
Sbjct: 125 72

Query: 261 285
           
Sbjct: 185 72

BLAST of WMU65835 vs. NCBI nr
Match: gi|590627017|ref|XP_007026334.1| (Uncharacterized protein TCM_030413 [Theobroma cacao])

HSP 1 Score: 76.3 bits (186), Expect = 5.6e-11
Identity = 42/91 (46.15%), Postives = 52/91 (57.14%), Query Frame = 3

Query: 84  WLHSTSYLLGNPT------------------EVHGYGEERSSKVKKGYE------EICTS 143
           ++HS  ++LG P                   E H  G  RSSKV  G +      E+  S
Sbjct: 6   FVHSACHVLGYPKDDHPNHLQHCNNMESYQKEGHSGGVIRSSKVSNGEQVSTQTAEMHLS 65

Query: 144 GFQMPLHYPRYNKADYQKMEEWKLDLLLKEY 203
           GFQMPLHYPRY KADY+KMEEWK+D+LL+EY
Sbjct: 66  GFQMPLHYPRYTKADYEKMEEWKVDMLLREY 96

Query: 204 263
           
Sbjct: 126 96

Query: 264 285
           
Sbjct: 186 96

BLAST of WMU65835 vs. NCBI nr
Match: gi|567915199|ref|XP_006449913.1| (hypothetical protein CICLE_v10017538mg, partial [Citrus clementina])

HSP 1 Score: 75.1 bits (183), Expect = 1.3e-10
Identity = 34/57 (59.65%), Postives = 41/57 (71.93%), Query Frame = 3

Query: 123 EVHGYGEERSSKVKKGYE---EICTSGFQMPLHYPRYNKADYQKMEEWKLDLLLKEY 182
           +V   G    SKV  G     E C SGFQ+PLHYPRY+KADY+KME+WKLD+LL+EY
Sbjct: 79  QVQANGVSSDSKVSDGLSQSVEACASGFQLPLHYPRYSKADYEKMEDWKLDMLLREY 135

Query: 183 242
           
Sbjct: 139 135

Query: 243 285
           
Sbjct: 199 135

BLAST of WMU65835 vs. NCBI nr
Match: gi|698443507|ref|XP_009764626.1| (PREDICTED: uncharacterized protein LOC104216298 [Nicotiana sylvestris])

HSP 1 Score: 74.3 bits (181), Expect = 2.1e-10
Identity = 35/74 (47.30%), Postives = 47/74 (63.51%), Query Frame = 3

Query: 84  WLHSTSY--LLGNPTEVHGYGEERSSKVKKGYEE-----ICTSGFQMPLHYPRYNKADYQ 143
           W+ + ++  ++GNP E +   + +S  V  G +E         GFQMPLHYPRY K+DYQ
Sbjct: 5   WVFNVAHTIVVGNPVEANKLPQNKSITVSNGKQEQEIEKCAVMGFQMPLHYPRYTKSDYQ 64

Query: 144 KMEEWKLDLLLKEY 203
            MEEWKLD LL+EY
Sbjct: 65  NMEEWKLDALLREY 78

Query: 204 263
           
Sbjct: 125 78

Query: 264 285
           
Sbjct: 185 78

BLAST of WMU65835 vs. NCBI nr
Match: gi|641859833|gb|KDO78523.1| (hypothetical protein CISIN_1g045350mg [Citrus sinensis])

HSP 1 Score: 73.9 bits (180), Expect = 2.8e-10
Identity = 34/57 (59.65%), Postives = 41/57 (71.93%), Query Frame = 3

Query: 123 EVHGYGEERSSKVKKGYE---EICTSGFQMPLHYPRYNKADYQKMEEWKLDLLLKEY 182
           +V   G    SKV  G     E C SGFQ+PLHYPRY+KADY+KME+WKLD+LL+EY
Sbjct: 37  QVQVNGVSSDSKVSDGLSQSVEACASGFQLPLHYPRYSKADYEKMEDWKLDMLLREY 93

Query: 183 242
           
Sbjct: 97  93

Query: 243 285
           
Sbjct: 157 93

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AT3G09950.11.0e-1065.85 unknown protein[more]
AT5G41761.13.3e-0951.06 unknown protein[more]
AT5G55620.12.1e-0852.17 unknown protein[more]
AT3G55570.11.8e-0768.75 unknown protein[more]
Match NameE-valueIdentityDescription
gi|778720128|ref|XP_011658113.1|5.6e-2785.29PREDICTED: uncharacterized protein LOC105435946 [Cucumis sativus][more]
gi|590627017|ref|XP_007026334.1|5.6e-1146.15Uncharacterized protein TCM_030413 [Theobroma cacao][more]
gi|567915199|ref|XP_006449913.1|1.3e-1059.65hypothetical protein CICLE_v10017538mg, partial [Citrus clementina][more]
gi|698443507|ref|XP_009764626.1|2.1e-1047.30PREDICTED: uncharacterized protein LOC104216298 [Nicotiana sylvestris][more]
gi|641859833|gb|KDO78523.1|2.8e-1059.65hypothetical protein CISIN_1g045350mg [Citrus sinensis][more]
The following terms have been associated with this transcribed_cluster:
Vocabulary: INTERPRO
TermDefinition

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla014392Cla014392gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S2_0135077S2_0135077EST


Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33513FAMILY NOT NAMEDcoord: 36..79
score: 2.7
NoneNo IPR availablePANTHERPTHR33513:SF2SUBFAMILY NOT NAMEDcoord: 36..79
score: 2.7