WMU22781 (transcribed_cluster) Watermelon (97103) v1

NameWMU22781
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionCytoplasmic tRNA 2-thiolation protein 1
LocationChr1 : 30440422 .. 30440780 (-)
Sequence length364
The following sequences are available for this feature:

transcribed_cluster sequence

GCCTCTTAACTTAAAAAGAAAAGAACACTTCCCTTCTCCCTGTTTCTCTCTGTTTCTTCTTTTGAAAGACCAGCCATGGCTTTAAGATGGCTGCTTCATTCAACAAGTTATCTTCTTGGGAACCCAACTGAGGTCCATGGCTATGGTGAAGAGAGAAGTTCAAAAGTTAAAAAGGGTTATGAAGAAATATGCACCTCTGGGGTTTCAAATGCCTCTTCATTACCCTCGCTACAACAAGGCAGATTACCGGAGTAAGGATGGAGGAGTGGAAGCTTGATCTCCTTCTCAAGGAATATGGCTTGAGTTTTCAAGGCAGTTTGGAGGAGAAGAGGGCTTTTGCAATGGGGTGCTCTTCTATGGCCTG
BLAST of WMU22781 vs. TrEMBL
Match: A0A0A0KMW8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511080 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.5e-10
Identity = 43/99 (43.43%), Postives = 53/99 (53.54%), Query Frame = 1

Query: 76  MALRWLLHSTSYLLGNPTEVHGYGEERSSKVKKGYEEICTSGVSNASSLPSLQQG---RL 135
           M LR LLHS SYLLGNP E H YGEERSSK KKGYEE+C SG       P  ++    ++
Sbjct: 1   MDLRGLLHSVSYLLGNPNEAHAYGEERSSKGKKGYEELCNSGFQMPLHYPRYKKSDYQKM 60

Query: 136 PE*GWRSGSLISFSRNMA*VFKAVWRRRGLLQWGALLWP 195
            E  W+   L+   +     F+     +     GA LWP
Sbjct: 61  EE--WKLDLLL---KEYGLSFEGSLEEKRAFAMGAFLWP 94

Query: 196 255
           
Sbjct: 121 94

Query: 256 315
           
Sbjct: 181 94

Query: 316 364
           
Sbjct: 241 94

BLAST of WMU22781 vs. TrEMBL
Match: G7IPB3_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_2g026420 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 8.2e-06
Identity = 25/31 (80.65%), Postives = 31/31 (100.00%), Query Frame = 3

Query: 255 RMEEWKLDLLLKEYGLSFQGSLEEKRAFAMG 314
           +MEEWK++LLLKEYGLSF+GSL+EKR+FAMG
Sbjct: 70  KMEEWKVELLLKEYGLSFKGSLDEKRSFAMG 100

Query: 315 348
           
Sbjct: 130 100

BLAST of WMU22781 vs. TrEMBL
Match: G7IPB3_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_2g026420 PE=4 SV=1)

HSP 1 Score: 35.4 bits (80), Expect = 5.8e+01
Identity = 13/19 (68.42%), Postives = 14/19 (73.68%), Query Frame = 2

Query: 203 FQMPLHYPRYNKADYRSKD 260
           FQMPLHYPRY K DY   +
Sbjct: 54  FQMPLHYPRYTKVDYEKME 72

BLAST of WMU22781 vs. NCBI nr
Match: gi|778720128|ref|XP_011658113.1| (PREDICTED: uncharacterized protein LOC105435946 [Cucumis sativus])

HSP 1 Score: 75.5 bits (184), Expect = 7.2e-11
Identity = 43/99 (43.43%), Postives = 53/99 (53.54%), Query Frame = 1

Query: 76  MALRWLLHSTSYLLGNPTEVHGYGEERSSKVKKGYEEICTSGVSNASSLPSLQQG---RL 135
           M LR LLHS SYLLGNP E H YGEERSSK KKGYEE+C SG       P  ++    ++
Sbjct: 1   MDLRGLLHSVSYLLGNPNEAHAYGEERSSKGKKGYEELCNSGFQMPLHYPRYKKSDYQKM 60

Query: 136 PE*GWRSGSLISFSRNMA*VFKAVWRRRGLLQWGALLWP 195
            E  W+   L+   +     F+     +     GA LWP
Sbjct: 61  EE--WKLDLLL---KEYGLSFEGSLEEKRAFAMGAFLWP 94

Query: 196 255
           
Sbjct: 121 94

Query: 256 315
           
Sbjct: 181 94

Query: 316 364
           
Sbjct: 241 94

BLAST of WMU22781 vs. NCBI nr
Match: gi|568841934|ref|XP_006474909.1| (PREDICTED: uncharacterized protein LOC102612961 [Citrus sinensis])

HSP 1 Score: 61.2 bits (147), Expect = 1.4e-06
Identity = 27/31 (87.10%), Postives = 31/31 (100.00%), Query Frame = 3

Query: 255 RMEEWKLDLLLKEYGLSFQGSLEEKRAFAMG 314
           +MEEWKLDLLLK+YGLSFQG+L+EKRAFAMG
Sbjct: 65  KMEEWKLDLLLKQYGLSFQGTLDEKRAFAMG 95

Query: 315 348
           
Sbjct: 125 95

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KMW8_CUCSA1.5e-1043.43Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511080 PE=4 SV=1[more]
G7IPB3_MEDTR8.2e-0680.65Uncharacterized protein OS=Medicago truncatula GN=MTR_2g026420 PE=4 SV=1[more]
G7IPB3_MEDTR5.8e+0168.42Uncharacterized protein OS=Medicago truncatula GN=MTR_2g026420 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|778720128|ref|XP_011658113.1|7.2e-1143.43PREDICTED: uncharacterized protein LOC105435946 [Cucumis sativus][more]
gi|568841934|ref|XP_006474909.1|1.4e-0687.10PREDICTED: uncharacterized protein LOC102612961 [Citrus sinensis][more]
The following terms have been associated with this transcribed_cluster:
Vocabulary: INTERPRO
TermDefinition

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla014392Cla014392gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S1_0039655S1_0039655EST
S1_0116479S1_0116479EST
S2_0048346S2_0048346EST
S2_0070308S2_0070308EST


Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33513FAMILY NOT NAMEDcoord: 61..91
score: 5.2
NoneNo IPR availablePANTHERPTHR33513:SF2SUBFAMILY NOT NAMEDcoord: 61..91
score: 5.2