Cla006277 (gene) Watermelon (97103) v1

Overview
NameCla006277
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr5 : 7335558 .. 7336140 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCCCCACCAGGATTTCCCTTGTGTTGAAGCTTCTTTTCTTTGCTTTGCTTCTCATTTCCTCTACTGTTTCTGCAACCAACAACATTCCTTTGCTCCACAACCCTCCTATTCGTAAGTTGTCTTTAATTACTGTATGATTTTCCCACACAATAATATAGCCTCTTTTTGGACTGTGTTTGCTAAACCGAATCCAATTGTGAACACCCGAATAAAATATAATTTAATCAATGATGAATATATAATGTTGCACTAATTTATGATTAATCTATTTTACACAAGCAAGACATGAACCACTTAGTATACTTCTCTAGAAAATAAATGATAAGTTAATTTGGTAAGAATAGGGTATCATTTTGAATTTTTTTAAATAATCGATTGACAAAAAAAAAAAACTTAGGTTGTTAAGTGAAGATAAATTCAATATTATATCATATAATAAATTTTTTACAAGGTTTTTATAAAGTTTCAGGTAAAATGGTTGGAAAGGTTGTGGCTGTACCAAAAGTAAAGGAACCAACTTCTGATGATGTCCCATGGGGGGGAGGCTATGTTCCTCCAATCTTAATCAACCCATGA

mRNA sequence

ATGGCTTCCCCCACCAGGATTTCCCTTGTGTTGAAGCTTCTTTTCTTTGCTTTGCTTCTCATTTCCTCTACTGTTTCTGCAACCAACAACATTCCTTTGCTCCACAACCCTCCTATTCGTAAAATGGTTGGAAAGGTTGTGGCTGTACCAAAAGTAAAGGAACCAACTTCTGATGATGTCCCATGGGGGGGAGGCTATGTTCCTCCAATCTTAATCAACCCATGA

Coding sequence (CDS)

ATGGCTTCCCCCACCAGGATTTCCCTTGTGTTGAAGCTTCTTTTCTTTGCTTTGCTTCTCATTTCCTCTACTGTTTCTGCAACCAACAACATTCCTTTGCTCCACAACCCTCCTATTCGTAAAATGGTTGGAAAGGTTGTGGCTGTACCAAAAGTAAAGGAACCAACTTCTGATGATGTCCCATGGGGGGGAGGCTATGTTCCTCCAATCTTAATCAACCCATGA

Protein sequence

MASPTRISLVLKLLFFALLLISSTVSATNNIPLLHNPPIRKMVGKVVAVPKVKEPTSDDVPWGGGYVPPILINP
Homology
[Close]
BLAST of Cla006277 vs. TrEMBL
Match: A0A0A0L8B2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G175600 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 9.9e-18
Identity = 56/83 (67.47%), Postives = 62/83 (74.70%), Query Frame = 1 

Query: 2  ASPTRISLVLKLLFFALLLISS--TVSATNNIPLLHNPPIRKM-VG-----KVVAVPKVK 61
          +SP +ISL+LKLLFFA LL  +  T+SATNNIPLLH PPIRKM VG     K V VPKV 
Sbjct: 3  SSPMKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVGYRKGEKAVVVPKVY 62

Query: 62 EPTSDDVPWGGGYV--PPILINP 75
          +PTS D PWGGGYV  PPIL NP
Sbjct: 63 KPTSADFPWGGGYVRRPPILNNP 85

[Close]
BLAST of Cla006277 vs. TrEMBL
Match: A0A0A0L653_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G175590 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 4.1e-16
Identity = 50/83 (60.24%), Postives = 58/83 (69.88%), Query Frame = 1 

Query: 1  MASPTRISLVLKLLFFALLLISSTVSATNNI--PLLHNPPIRKM-------VGKVVAVPK 60
          MASP RI L+LKLLFF+LLLI STVS TNN+  PL H P IRK+        GK   VP+
Sbjct: 1  MASPWRIPLLLKLLFFSLLLIFSTVSTTNNVVQPLFHKPRIRKIGVDKKTNDGKAGVVPR 60

Query: 61 VKEPTSDDVPWGGGYVPPILINP 75
          V +PTS+D PWGGGY+ P L NP
Sbjct: 61 VIKPTSEDFPWGGGYIHPHLSNP 83

[Close]
BLAST of Cla006277 vs. NCBI nr
Match: gi|700202126|gb|KGN57259.1| (hypothetical protein Csa_3G175600 [Cucumis sativus])

HSP 1 Score: 97.1 bits (240), Expect = 1.4e-17
Identity = 56/83 (67.47%), Postives = 62/83 (74.70%), Query Frame = 1 

Query: 2  ASPTRISLVLKLLFFALLLISS--TVSATNNIPLLHNPPIRKM-VG-----KVVAVPKVK 61
          +SP +ISL+LKLLFFA LL  +  T+SATNNIPLLH PPIRKM VG     K V VPKV 
Sbjct: 3  SSPMKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVGYRKGEKAVVVPKVY 62

Query: 62 EPTSDDVPWGGGYV--PPILINP 75
          +PTS D PWGGGYV  PPIL NP
Sbjct: 63 KPTSADFPWGGGYVRRPPILNNP 85

[Close]
BLAST of Cla006277 vs. NCBI nr
Match: gi|700202125|gb|KGN57258.1| (hypothetical protein Csa_3G175590 [Cucumis sativus])

HSP 1 Score: 91.7 bits (226), Expect = 5.9e-16
Identity = 50/83 (60.24%), Postives = 58/83 (69.88%), Query Frame = 1 

Query: 1  MASPTRISLVLKLLFFALLLISSTVSATNNI--PLLHNPPIRKM-------VGKVVAVPK 60
          MASP RI L+LKLLFF+LLLI STVS TNN+  PL H P IRK+        GK   VP+
Sbjct: 1  MASPWRIPLLLKLLFFSLLLIFSTVSTTNNVVQPLFHKPRIRKIGVDKKTNDGKAGVVPR 60

Query: 61 VKEPTSDDVPWGGGYVPPILINP 75
          V +PTS+D PWGGGY+ P L NP
Sbjct: 61 VIKPTSEDFPWGGGYIHPHLSNP 83

The following BLAST results are available for this feature:
BLAST of Cla006277 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L8B2_CUCSA9.9e-1867.47Uncharacterized protein OS=Cucumis sativus GN=Csa_3G175600 PE=4 SV=1[more]
A0A0A0L653_CUCSA4.1e-1660.24Uncharacterized protein OS=Cucumis sativus GN=Csa_3G175590 PE=4 SV=1[more]
BLAST of Cla006277 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202126|gb|KGN57259.1|1.4e-1767.47hypothetical protein Csa_3G175600 [Cucumis sativus][more]
gi|700202125|gb|KGN57258.1|5.9e-1660.24hypothetical protein Csa_3G175590 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0007076 mitotic chromosome condensation
cellular_component GO:0005575 cellular_component
cellular_component GO:0000796 condensin complex
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function
molecular_function GO:0005524 ATP binding
molecular_function GO:0005515 protein binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU65188watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla006277Cla006277.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU65188WMU65188transcribed_cluster