Cla97C05G089060 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C05G089060
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Unknown protein
Location	Cla97Chr05 : 7305886 .. 7306468 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCCCCACCAGGATTTCCCTTGTGTTGAAGCTTCTTTTCTTTGCTTTGCTTCTCATTTCCTCTACTGTTTCTGCAACCAACAACATTCCTTTGCTCCACAACCCTCCTATTCGTAAGTTGTCTTTAATTACTGTATGATTTTCCCACACAATAATATAGCCTCTTTTTGGACTGTGTTTGCTAAACCGAATCCAATTGTGAACACCCGAATAAAATATAATTTAATCAATGATGAATATATAATGTTGCACTAATTTATGATTAATCTATTTTACACAAGCAAGACATGAACCACTTAGTATACTTCTCTAGAAAATAAATGATAAGTTAATTTGGTAAGAATAGGGTATCATTTTGAATTTTTTTAAATAATCGATTGACAAAAAAAAAAAACTTAGGTTGTTAAGTGAAGATAAATTCAATATTATATCATATAATAAATTTTTTACAAGGTTTTTATAAAGTTTCAGGTAAAATGGTTGGAAAGGTTGTGGCTGTACCAAAAGTAAAGGAACCAACTTCTGATGATGTCCCATGGGGGGGAGGCTATGTTCCTCCAATCTTAATCAACCCATGA

mRNA sequence

ATGGCTTCCCCCACCAGGATTTCCCTTGTGTTGAAGCTTCTTTTCTTTGCTTTGCTTCTCATTTCCTCTACTGTTTCTGCAACCAACAACATTCCTTTGCTCCACAACCCTCCTATTCGTAAAATGGTTGGAAAGGTTGTGGCTGTACCAAAAGTAAAGGAACCAACTTCTGATGATGTCCCATGGGGGGGAGGCTATGTTCCTCCAATCTTAATCAACCCATGA

Coding sequence (CDS)

ATGGCTTCCCCCACCAGGATTTCCCTTGTGTTGAAGCTTCTTTTCTTTGCTTTGCTTCTCATTTCCTCTACTGTTTCTGCAACCAACAACATTCCTTTGCTCCACAACCCTCCTATTCGTAAAATGGTTGGAAAGGTTGTGGCTGTACCAAAAGTAAAGGAACCAACTTCTGATGATGTCCCATGGGGGGGAGGCTATGTTCCTCCAATCTTAATCAACCCATGA

Protein sequence

MASPTRISLVLKLLFFALLLISSTVSATNNIPLLHNPPIRKMVGKVVAVPKVKEPTSDDVPWGGGYVPPILINP

Homology

[Close]

BLAST of Cla97C05G089060 vs. NCBI nr
Match: KGN57259.1 (hypothetical protein Csa_3G175600 [Cucumis sativus])

HSP 1 Score: 92.8 bits (229), Expect = 5.2e-16
Identity = 56/83 (67.47%), Postives = 62/83 (74.70%), Query Frame = 0


Query: 2  ASPTRISLVLKLLFFALLLI--SSTVSATNNIPLLHNPPIRKM-VG-----KVVAVPKVK 61
          +SP +ISL+LKLLFFA LL    +T+SATNNIPLLH PPIRKM VG     K V VPKV 
Sbjct: 3  SSPMKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVGYRKGEKAVVVPKVY 62

Query: 62 EPTSDDVPWGGGYV--PPILINP 75
          +PTS D PWGGGYV  PPIL NP
Sbjct: 63 KPTSADFPWGGGYVRRPPILNNP 85

[Close]

BLAST of Cla97C05G089060 vs. NCBI nr
Match: KGN57258.1 (hypothetical protein Csa_3G175590 [Cucumis sativus])

HSP 1 Score: 87.0 bits (214), Expect = 2.8e-14
Identity = 50/83 (60.24%), Postives = 58/83 (69.88%), Query Frame = 0


Query: 1  MASPTRISLVLKLLFFALLLISSTVSATNNI--PLLHNPPIRKM-------VGKVVAVPK 60
          MASP RI L+LKLLFF+LLLI STVS TNN+  PL H P IRK+        GK   VP+
Sbjct: 1  MASPWRIPLLLKLLFFSLLLIFSTVSTTNNVVQPLFHKPRIRKIGVDKKTNDGKAGVVPR 60

Query: 61 VKEPTSDDVPWGGGYVPPILINP 75
          V +PTS+D PWGGGY+ P L NP
Sbjct: 61 VIKPTSEDFPWGGGYIHPHLSNP 83

[Close]

BLAST of Cla97C05G089060 vs. TrEMBL
Match: tr|A0A0A0L8B2|A0A0A0L8B2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175600 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.4e-16
Identity = 56/83 (67.47%), Postives = 62/83 (74.70%), Query Frame = 0


Query: 2  ASPTRISLVLKLLFFALLLI--SSTVSATNNIPLLHNPPIRKM-VG-----KVVAVPKVK 61
          +SP +ISL+LKLLFFA LL    +T+SATNNIPLLH PPIRKM VG     K V VPKV 
Sbjct: 3  SSPMKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVGYRKGEKAVVVPKVY 62

Query: 62 EPTSDDVPWGGGYV--PPILINP 75
          +PTS D PWGGGYV  PPIL NP
Sbjct: 63 KPTSADFPWGGGYVRRPPILNNP 85

[Close]

BLAST of Cla97C05G089060 vs. TrEMBL
Match: tr|A0A0A0L653|A0A0A0L653_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175590 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.9e-14
Identity = 50/83 (60.24%), Postives = 58/83 (69.88%), Query Frame = 0


Query: 1  MASPTRISLVLKLLFFALLLISSTVSATNNI--PLLHNPPIRKM-------VGKVVAVPK 60
          MASP RI L+LKLLFF+LLLI STVS TNN+  PL H P IRK+        GK   VP+
Sbjct: 1  MASPWRIPLLLKLLFFSLLLIFSTVSTTNNVVQPLFHKPRIRKIGVDKKTNDGKAGVVPR 60

Query: 61 VKEPTSDDVPWGGGYVPPILINP 75
          V +PTS+D PWGGGY+ P L NP
Sbjct: 61 VIKPTSEDFPWGGGYIHPHLSNP 83

The following BLAST results are available for this feature:

BLAST of Cla97C05G089060 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57259.1	5.2e-16	67.47	hypothetical protein Csa_3G175600 [Cucumis sativus]	[more]
KGN57258.1	2.8e-14	60.24	hypothetical protein Csa_3G175590 [Cucumis sativus]	[more]

BLAST of Cla97C05G089060 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L8B2\|A0A0A0L8B2_CUCSA	3.4e-16	67.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175600 PE=4 SV=1	[more]
tr\|A0A0A0L653\|A0A0A0L653_CUCSA	1.9e-14	60.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175590 PE=4 SV=1	[more]

BLAST of Cla97C05G089060 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C05G089060 vs. TAIR10


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C05G089060.1	Cla97C05G089060.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C05G089060	Cla006277	Watermelon (97103) v1	wmwmbB206
Cla97C05G089060	Csa3G175600	Cucumber (Chinese Long) v2	cuwmbB204
Cla97C05G089060	CSPI03G15860	Wild cucumber (PI 183967)	cpiwmbB209
Cla97C05G089060	CsGy3G015950	Cucumber (Gy14) v2	cgybwmbB196
Cla97C05G089060	CsaV3_3G016070	Cucumber (Chinese Long) v3	cucwmbB206

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C05G089060	Silver-seed gourd	carwmbB0398
Cla97C05G089060	Silver-seed gourd	carwmbB0910
Cla97C05G089060	Cucumber (Gy14) v1	cgywmbB452
Cla97C05G089060	Cucurbita maxima (Rimu)	cmawmbB346
Cla97C05G089060	Cucurbita maxima (Rimu)	cmawmbB767
Cla97C05G089060	Cucurbita moschata (Rifu)	cmowmbB331
Cla97C05G089060	Cucurbita moschata (Rifu)	cmowmbB739
Cla97C05G089060	Bottle gourd (USVL1VR-Ls)	lsiwmbB334
Cla97C05G089060	Melon (DHL92) v3.6.1	medwmbB423
Cla97C05G089060	Melon (DHL92) v3.5.1	mewmbB434
Cla97C05G089060	Watermelon (Charleston Gray)	wcgwmbB229
Cla97C05G089060	Wax gourd	wgowmbB178