CsGy3G015950 (gene) Cucumber (Gy14) v2

Overview
NameCsGy3G015950
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr3 : 11842876 .. 11844441 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTCATGAGAAAAAGCTTATATCATCAATGGTCTCAAAAATGGCATCCTCCCCCATGAAGATTTCCCTTATGTTGAAGCTGCTTTTCTTTGCTACTTTGCTTTTCATTGCCTATACTACTATTTCTGCAACAAACAACATTCCTTTGCTCCACAAACCTCCTATTCGTAAGTTCTCTTTTTCCCATTATTTTATCATTATTATAAATGAATATATAAAATAAAATCTATTTTAGTACACAAGCAAAGAAACATATACTTCCCTTTAAAAGAAATGGGAGCTAAGTTGGTAAGAAAACGATAGAGGTTGTTTGGAGAGGTGATATGAGCACAACAACCAATTTGGGGGTGATGGTAAAATATGAAAATGGTGGAAAAGAGGGTTGAGTCGAATAAAATGCCTTCAGCATTAAAAATCGAGTCCAAAATGTTTAATAAAAACAAAACATGCGTTTTGGATTACATTACACTATAAACAAATTACATCAGGGACATCCAAACGCCTCCATAGTTTCATTTTGAATTTTGTTAAATCACTAACTTACTGATTGATGTAAACGAGCTAATGAACGAAAGCTAATTTAATATTACACTACAAGAAATTGGGGATCTCTCAACGCATCATGTCATCGAGATATTACAAAATGGCAGCAGGAGTAGTTCTCCTGAAGACTAAATAGTCGTTGCAAATGTGGTTGAAAAAACCACCTCGAGAGAGGATGCAAGGTGTCAAGAATGGATCATTCCCGATGCACCATTAATACGGTGTTGAGAGTTTTGAACTCCCGACACATTTCATTTATGCATCGGAAACGTATCATTCTAGACGATGCAATCGTGTCGGGAATGGACGTCCCAACACCCAATGCATAAGTGAAACCGTTGAAAATTGAGGAGCTTCAACTCCTGACGGCGTACGTTGGAAATTGTTACATTTTTATTTCTTTTTTTAATTATTATTTTATTTTATTTTTTTAGGTATACCTCGGTGCTATTTCGTTTTCAGTTTCGATCTAAAATTCAATAAAATAGCTTAACAAAATGTTATGAGTTAATTAATATAACTAAACTAAAATAGGAAAGTTCCAACTACAAAATTGGAACATATATTTCATAACAAACATAGAACACATGTTTCATAACAATGTGCTTTTAAAATAATAAGTATATATAAAAAAAGACGTCGATCATTTAACAAAAATCTCCCCTACGATTTCAGGTAAAATGGCTGTGGGGTACAGAAAAGGTGAGAAGGCTGTGGTTGTACCAAAAGTATATAAACCAACTTCTGCTGATTTTCCATGGGGTGGAGGCTATGTTCGTCGTCCTCCAATTTTAAACAACCCATGATATATGAAGCTTTACAATTGTTTGGATGATCATCAGCTATGTTTGTCTTTTGTGGAGCGTCAATCTCTAAGTCTTCTTTACCCTGCAATAAAAAGTACTTTAATAATTTCATATATTTCTTAATCTTATCTATTACTTTATTTCTTCTCAGTACATTATTCAAGCTCTTCTTTTTCCAATGGATCATATAGATTAATACTTCAACATGCACGGTCAAG

mRNA sequence

CTTCATGAGAAAAAGCTTATATCATCAATGGTCTCAAAAATGGCATCCTCCCCCATGAAGATTTCCCTTATGTTGAAGCTGCTTTTCTTTGCTACTTTGCTTTTCATTGCCTATACTACTATTTCTGCAACAAACAACATTCCTTTGCTCCACAAACCTCCTATTCGTAAAATGGCTGTGGGGTACAGAAAAGGTGAGAAGGCTGTGGTTGTACCAAAAGTATATAAACCAACTTCTGCTGATTTTCCATGGGGTGGAGGCTATGTTCGTCGTCCTCCAATTTTAAACAACCCATGATATATGAAGCTTTACAATTGTTTGGATGATCATCAGCTATGTTTGTCTTTTGTGGAGCGTCAATCTCTAAGTCTTCTTTACCCTGCAATAAAAAGTACTTTAATAATTTCATATATTTCTTAATCTTATCTATTACTTTATTTCTTCTCAGTACATTATTCAAGCTCTTCTTTTTCCAATGGATCATATAGATTAATACTTCAACATGCACGGTCAAG

Coding sequence (CDS)

ATGGTCTCAAAAATGGCATCCTCCCCCATGAAGATTTCCCTTATGTTGAAGCTGCTTTTCTTTGCTACTTTGCTTTTCATTGCCTATACTACTATTTCTGCAACAAACAACATTCCTTTGCTCCACAAACCTCCTATTCGTAAAATGGCTGTGGGGTACAGAAAAGGTGAGAAGGCTGTGGTTGTACCAAAAGTATATAAACCAACTTCTGCTGATTTTCCATGGGGTGGAGGCTATGTTCGTCGTCCTCCAATTTTAAACAACCCATGA

Protein sequence

MVSKMASSPMKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVGYRKGEKAVVVPKVYKPTSADFPWGGGYVRRPPILNNP
Homology
[Close]
BLAST of CsGy3G015950 vs. NCBI nr
Match: KGN57259.1 (hypothetical protein Csa_3G175600 [Cucumis sativus])

HSP 1 Score: 171.4 bits (433), Expect = 1.4e-39
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0 

Query: 5  MASSPMKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVGYRKGEKAVVVPK 64
          MASSPMKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVGYRKGEKAVVVPK
Sbjct: 1  MASSPMKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVGYRKGEKAVVVPK 60

Query: 65 VYKPTSADFPWGGGYVRRPPILNNP 90
          VYKPTSADFPWGGGYVRRPPILNNP
Sbjct: 61 VYKPTSADFPWGGGYVRRPPILNNP 85

[Close]
BLAST of CsGy3G015950 vs. NCBI nr
Match: KGN57258.1 (hypothetical protein Csa_3G175590 [Cucumis sativus])

HSP 1 Score: 85.9 bits (211), Expect = 7.6e-14
Identity = 48/86 (55.81%), Postives = 62/86 (72.09%), Query Frame = 0 

Query: 7  SSPMKISLMLKLLFFATLLFIAYTTISATNNI--PLLHKPPIRKMAVGYRKGE-KAVVVP 66
          +SP +I L+LKLLFF+ LL   ++T+S TNN+  PL HKP IRK+ V  +  + KA VVP
Sbjct: 2  ASPWRIPLLLKLLFFSLLLI--FSTVSTTNNVVQPLFHKPRIRKIGVDKKTNDGKAGVVP 61

Query: 67 KVYKPTSADFPWGGGYVRRPPILNNP 90
          +V KPTS DFPWGGGY+   P L+NP
Sbjct: 62 RVIKPTSEDFPWGGGYIH--PHLSNP 83

[Close]
BLAST of CsGy3G015950 vs. TrEMBL
Match: tr|A0A0A0L8B2|A0A0A0L8B2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175600 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 9.1e-40
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0 

Query: 5  MASSPMKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVGYRKGEKAVVVPK 64
          MASSPMKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVGYRKGEKAVVVPK
Sbjct: 1  MASSPMKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVGYRKGEKAVVVPK 60

Query: 65 VYKPTSADFPWGGGYVRRPPILNNP 90
          VYKPTSADFPWGGGYVRRPPILNNP
Sbjct: 61 VYKPTSADFPWGGGYVRRPPILNNP 85

[Close]
BLAST of CsGy3G015950 vs. TrEMBL
Match: tr|A0A0A0L653|A0A0A0L653_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175590 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 5.0e-14
Identity = 48/86 (55.81%), Postives = 62/86 (72.09%), Query Frame = 0 

Query: 7  SSPMKISLMLKLLFFATLLFIAYTTISATNNI--PLLHKPPIRKMAVGYRKGE-KAVVVP 66
          +SP +I L+LKLLFF+ LL   ++T+S TNN+  PL HKP IRK+ V  +  + KA VVP
Sbjct: 2  ASPWRIPLLLKLLFFSLLLI--FSTVSTTNNVVQPLFHKPRIRKIGVDKKTNDGKAGVVP 61

Query: 67 KVYKPTSADFPWGGGYVRRPPILNNP 90
          +V KPTS DFPWGGGY+   P L+NP
Sbjct: 62 RVIKPTSEDFPWGGGYIH--PHLSNP 83

The following BLAST results are available for this feature:
BLAST of CsGy3G015950 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57259.11.4e-39100.00hypothetical protein Csa_3G175600 [Cucumis sativus][more]
KGN57258.17.6e-1455.81hypothetical protein Csa_3G175590 [Cucumis sativus][more]
BLAST of CsGy3G015950 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy3G015950 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy3G015950 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L8B2|A0A0A0L8B2_CUCSA9.1e-40100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175600 PE=4 SV=1[more]
tr|A0A0A0L653|A0A0A0L653_CUCSA5.0e-1455.81Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175590 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy3G015950.1CsGy3G015950.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy3G015950Cla97C05G089060Watermelon (97103) v2cgybwmbB196
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy3G015950Cucurbita pepo (Zucchini)cgybcpeB327
CsGy3G015950Cucurbita pepo (Zucchini)cgybcpeB370
CsGy3G015950Cucumber (Chinese Long) v2cgybcuB109
CsGy3G015950Bottle gourd (USVL1VR-Ls)cgyblsiB197
CsGy3G015950Melon (DHL92) v3.5.1cgybmeB200
CsGy3G015950Melon (DHL92) v3.6.1cgybmedB201
CsGy3G015950Watermelon (Charleston Gray)cgybwcgB203
CsGy3G015950Watermelon (97103) v1cgybwmB217
CsGy3G015950Wild cucumber (PI 183967)cgybcpiB110
CsGy3G015950Silver-seed gourdcarcgybB0381
CsGy3G015950Silver-seed gourdcarcgybB0859
CsGy3G015950Cucumber (Chinese Long) v3cgybcucB117
CsGy3G015950Wax gourdcgybwgoB257
CsGy3G015950Cucurbita maxima (Rimu)cgybcmaB342
CsGy3G015950Cucurbita maxima (Rimu)cgybcmaB417
CsGy3G015950Cucurbita moschata (Rifu)cgybcmoB312
CsGy3G015950Cucurbita moschata (Rifu)cgybcmoB394