Csa3G175600 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G175600
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 11810564 .. 11811872 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATCCTCCCCCATGAAGATTTCCCTTATGTTGAAGCTGCTTTTCTTTGCTACTTTGCTTTTCATTGCCTATACTACTATTTCTGCAACAAACAACATTCCTTTGCTCCACAAACCTCCTATTCGTAAGTTCTCTTTTTCCCATTATTTTATCATTATTATAAATGAATATATAAAATAAAATCTATTTTAGTACACAAGCAAAGAAACATATACTTCCCTTTAAAAGAAATGGGAGCTAAGTTGGTAAGAAAACGATAGAGGTTGTTTGGAGAGGTGATATGAGCACAACAACCAATTTGGGGGTGATGGTAAAATATGAAAATGGTGGAAAAGAGGGTTGAGTCGAATAAAATGCCTTCAGCATTAAAAATCGAGTCCAAAATGTTTAATAAAAACAAAACATGCGTTTTGGATTACATTACACTATAAACAAATTACATCAGGGACATCCAAACGCCTCCATAGTTTCATTTTGAATTTTGTTAAATCACTAACTTACTGATTGATGTAAACGAGCTAATGAACGAAAGCTAATTTAATATTACACTACAAGAAATTGGGGATCTCTCAACGCATCATGTCATCGAGATATTACAAAATGGCAGCAGGAGTAGTTCTCCTGAAGACTAAATAGTCGTTGCAGATGTGGTTGAAAAAACCACCTCGAGAGAGGATGCAAGGTGTCAAGAATGGATCATTCCCGATGCACCATTAATACGGTGTTGAGAGTTTTGAACTCCCGACACATTTCATTTATGCATCGGAAACGTATCATTCTAGACGATGCAATCGTGTCGGGAATGGACGTCCCAACACCCAATGCATAAGTGAAACCGTTGAAAATTGAGGAGCTTCAACTCCTGACGGCGTACGTTGGAAATTGTTACATTTTTATTTCTTTTTTTAATTATTATTTTATTTTATTTTTTTAGGTATACCTCGGTGCTATTTCGTTTTCAGTTTCGATCTAAAATTCAATAAAATAGCTTAACAAAATGTTATGAGTTAATTAATATAACTAAACTAAAATAGGAAAGTTCCAACTACAAAATTGGAACATATATTTCATAACAAACATAGAACACATGTTTCATAACAATGTGCTTTTAAAATAATAAGTATATATAAAAAAAGACGTCGATCATTTAACAAAAATCTCCCCTACGATTTCAGGTAAAATGGCTGTGGGGTACAGAAAAGGTGAGAAGGCTGTGGTTGTACCAAAAGTATATAAACCAACTTCTGCTGATTTTCCATGGGGTGGAGGCTATGTTCGTCGTCCTCCAATTTTAAACAACCCATGA

mRNA sequence

ATGGCATCCTCCCCCATGAAGATTTCCCTTATGTTGAAGCTGCTTTTCTTTGCTACTTTGCTTTTCATTGCCTATACTACTATTTCTGCAACAAACAACATTCCTTTGCTCCACAAACCTCCTATTCGTAAAATGGCTGTGGGGTACAGAAAAGGTGAGAAGGCTGTGGTTGTACCAAAAGTATATAAACCAACTTCTGCTGATTTTCCATGGGGTGGAGGCTATGTTCGTCGTCCTCCAATTTTAAACAACCCATGA

Coding sequence (CDS)

ATGGCATCCTCCCCCATGAAGATTTCCCTTATGTTGAAGCTGCTTTTCTTTGCTACTTTGCTTTTCATTGCCTATACTACTATTTCTGCAACAAACAACATTCCTTTGCTCCACAAACCTCCTATTCGTAAAATGGCTGTGGGGTACAGAAAAGGTGAGAAGGCTGTGGTTGTACCAAAAGTATATAAACCAACTTCTGCTGATTTTCCATGGGGTGGAGGCTATGTTCGTCGTCCTCCAATTTTAAACAACCCATGA

Protein sequence

MASSPMKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVGYRKGEKAVVVPKVYKPTSADFPWGGGYVRRPPILNNP*
Homology
[Close]
BLAST of Csa3G175600 vs. TrEMBL
Match: A0A0A0L8B2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G175600 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 3.3e-41
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 1 

Query: 1  MASSPMKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVGYRKGEKAVVVPK 60
          MASSPMKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVGYRKGEKAVVVPK
Sbjct: 1  MASSPMKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVGYRKGEKAVVVPK 60

Query: 61 VYKPTSADFPWGGGYVRRPPILNNP 86
          VYKPTSADFPWGGGYVRRPPILNNP
Sbjct: 61 VYKPTSADFPWGGGYVRRPPILNNP 85

[Close]
BLAST of Csa3G175600 vs. TrEMBL
Match: A0A0A0L653_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G175590 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 4.1e-15
Identity = 48/86 (55.81%), Postives = 62/86 (72.09%), Query Frame = 1 

Query: 3  SSPMKISLMLKLLFFATLLFIAYTTISATNNI--PLLHKPPIRKMAVGYRKGE-KAVVVP 62
          +SP +I L+LKLLFF+ LL   ++T+S TNN+  PL HKP IRK+ V  +  + KA VVP
Sbjct: 2  ASPWRIPLLLKLLFFSLLLI--FSTVSTTNNVVQPLFHKPRIRKIGVDKKTNDGKAGVVP 61

Query: 63 KVYKPTSADFPWGGGYVRRPPILNNP 86
          +V KPTS DFPWGGGY+   P L+NP
Sbjct: 62 RVIKPTSEDFPWGGGYIH--PHLSNP 83

[Close]
BLAST of Csa3G175600 vs. NCBI nr
Match: gi|700202126|gb|KGN57259.1| (hypothetical protein Csa_3G175600 [Cucumis sativus])

HSP 1 Score: 175.3 bits (443), Expect = 4.7e-41
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 1 

Query: 1  MASSPMKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVGYRKGEKAVVVPK 60
          MASSPMKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVGYRKGEKAVVVPK
Sbjct: 1  MASSPMKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVGYRKGEKAVVVPK 60

Query: 61 VYKPTSADFPWGGGYVRRPPILNNP 86
          VYKPTSADFPWGGGYVRRPPILNNP
Sbjct: 61 VYKPTSADFPWGGGYVRRPPILNNP 85

[Close]
BLAST of Csa3G175600 vs. NCBI nr
Match: gi|700202125|gb|KGN57258.1| (hypothetical protein Csa_3G175590 [Cucumis sativus])

HSP 1 Score: 88.6 bits (218), Expect = 5.8e-15
Identity = 48/86 (55.81%), Postives = 62/86 (72.09%), Query Frame = 1 

Query: 3  SSPMKISLMLKLLFFATLLFIAYTTISATNNI--PLLHKPPIRKMAVGYRKGE-KAVVVP 62
          +SP +I L+LKLLFF+ LL   ++T+S TNN+  PL HKP IRK+ V  +  + KA VVP
Sbjct: 2  ASPWRIPLLLKLLFFSLLLI--FSTVSTTNNVVQPLFHKPRIRKIGVDKKTNDGKAGVVP 61

Query: 63 KVYKPTSADFPWGGGYVRRPPILNNP 86
          +V KPTS DFPWGGGY+   P L+NP
Sbjct: 62 RVIKPTSEDFPWGGGYIH--PHLSNP 83

The following BLAST results are available for this feature:
BLAST of Csa3G175600 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L8B2_CUCSA3.3e-41100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G175600 PE=4 SV=1[more]
A0A0A0L653_CUCSA4.1e-1555.81Uncharacterized protein OS=Cucumis sativus GN=Csa_3G175590 PE=4 SV=1[more]
BLAST of Csa3G175600 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202126|gb|KGN57259.1|4.7e-41100.00hypothetical protein Csa_3G175600 [Cucumis sativus][more]
gi|700202125|gb|KGN57258.1|5.8e-1555.81hypothetical protein Csa_3G175590 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G175600.1Csa3G175600.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa3G175600Cla006277Watermelon (97103) v1cuwmB233
Csa3G175600Cla97C05G089060Watermelon (97103) v2cuwmbB204
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G175600Wax gourdcuwgoB269
Csa3G175600Cucumber (Gy14) v1cgycuB366
Csa3G175600Cucurbita maxima (Rimu)cmacuB329
Csa3G175600Cucurbita maxima (Rimu)cmacuB703
Csa3G175600Cucurbita moschata (Rifu)cmocuB317
Csa3G175600Cucurbita moschata (Rifu)cmocuB694
Csa3G175600Melon (DHL92) v3.5.1cumeB236
Csa3G175600Watermelon (Charleston Gray)cuwcgB222
Csa3G175600Cucurbita pepo (Zucchini)cpecuB214
Csa3G175600Cucurbita pepo (Zucchini)cpecuB394
Csa3G175600Bottle gourd (USVL1VR-Ls)culsiB210
Csa3G175600Cucumber (Gy14) v2cgybcuB109
Csa3G175600Melon (DHL92) v3.6.1cumedB223
Csa3G175600Silver-seed gourdcarcuB0401
Csa3G175600Silver-seed gourdcarcuB0885