CsaV3_3G016070 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G016070
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 12001672 .. 12003181 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGCTTATATCATCAATGGTCTCAAAAATGGCATCCTCCCCCATGAAGATTTCCCTTATGTTGAAGCTGCTTTTCTTTGCTACTTTGCTTTTCATTGCCTATACTACTATTTCTGCAACAAACAACATTCCTTTGCTCCACAAACCTCCTATTCGTAAGTTCTCTTTTTCCCATTATTTTATCATTATTATAAATGAATATATAAAATAAAATCTATTTTAGTACACAAGCAAAGAAACATATACTTCCCTTTAAAAGAAATGGGAGCTAAGTTGGTAAGAAAACGATAGAGGTTGTTTGGAGAGGTGATATGAGCACAACAACCAATTTGGGGGTGATGGTAAAATATGAAAATGGTGGAAAAGAGGGTTGAGTCGAATAAAATGCCTTCAGCATTAAAAATCGAGTCCAAAATGTTTAATAAAAACAAAACATGCGTTTTGGATTACATTACACTATAAACAAATTACATCAGGGACATCCAAACGCCTCCATAGTTTCATTTTGAATTTTGTTAAATCACTAACTTACTGATTGATGTAAACGAGCTAATGAACGAAAGCTAATTTAATATTACACTACAAGAAATTGGGGATCTCTCAACGCATCATGTCATCGAGATATTACAAAATGGCAGCAGGAGTAGTTCTCCTGAAGACTAAATAGTCGTTGCAGATGTGGTTGAAAAAACCACCTCGAGAGAGGATGCAAGGTGTCAAGAATGGATCATTCCCGATGCACCATTAATACGGTGTTGAGAGTTTTGAACTCCCGACACATTTCATTTATGCATCGGAAACGTATCATTCTAGACGATGCAATCGTGTCGGGAATGGACGTCCCAACACCCAATGCATAAGTGAAACCGTTGAAAATTGAGGAGCTTCAACTCCTGACGGCGTACGTTGGAAATTGTTACATTTTTATTTCTTTTTTTAATTATTATTTTATTTTATTTTTTTAGGTATACCTCGGTGCTATTTCGTTTTCAGTTTCGATCTAAAATTCAATAAAATAGCTTAACAAAATGTTATGAGTTAATTAATATAACTAAACTAAAATAGGAAAGTTCCAACTACAAAATTGGAACATATATTTCATAACAAACATAGAACACATGTTTCATAACAATGTGCTTTTAAAATAATAAGTATATATAAAAAAAGACGTCGATCATTTAACAAAAATCTCCCCTACGATTTCAGGTAAAATGGCTGTGGGGTACAGAAAAGGTGAGAAGGCTGTGGTTGTACCAAAAGTATATAAACCAACTTCTGCTGATTTTCCATGGGGTGGAGGCTATGTTCGTCGTCCTCCAATTTTAAACAACCCATGATATATGAAGCTTTACAATTGTTTGGATGATCATCAGCTATGTTTGTCTTTTGTGGAGCGTCAATCTCTAAGTCTTCTTTACCCTGCAATAAAAAGTACTTTAATAATTTCATATATTTCTTAATCTTATCTATTACTTTATTTCTTCTCAGTACATTATTCAAGCTCTTCTTTTT

mRNA sequence

ATGGTCTCAAAAATGGCATCCTCCCCCATGAAGATTTCCCTTATGTTGAAGCTGCTTTTCTTTGCTACTTTGCTTTTCATTGCCTATACTACTATTTCTGCAACAAACAACATTCCTTTGCTCCACAAACCTCCTATTCGTAAAATGGCTGTGGGGTACAGAAAAGGTGAGAAGGCTGTGGTTGTACCAAAAGTATATAAACCAACTTCTGCTGATTTTCCATGGGGTGGAGGCTATGTTCGTCGTCCTCCAATTTTAAACAACCCATGA

Coding sequence (CDS)

ATGGTCTCAAAAATGGCATCCTCCCCCATGAAGATTTCCCTTATGTTGAAGCTGCTTTTCTTTGCTACTTTGCTTTTCATTGCCTATACTACTATTTCTGCAACAAACAACATTCCTTTGCTCCACAAACCTCCTATTCGTAAAATGGCTGTGGGGTACAGAAAAGGTGAGAAGGCTGTGGTTGTACCAAAAGTATATAAACCAACTTCTGCTGATTTTCCATGGGGTGGAGGCTATGTTCGTCGTCCTCCAATTTTAAACAACCCATGA

Protein sequence

MVSKMASSPMKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVGYRKGEKAVVVPKVYKPTSADFPWGGGYVRRPPILNNP
Homology
[Close]
BLAST of CsaV3_3G016070 vs. NCBI nr
Match: KGN57259.1 (hypothetical protein Csa_3G175600 [Cucumis sativus])

HSP 1 Score: 172.2 bits (435), Expect = 8.2e-40
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0 

Query: 5  MASSPMKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVGYRKGEKAVVVPK 64
          MASSPMKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVGYRKGEKAVVVPK
Sbjct: 1  MASSPMKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVGYRKGEKAVVVPK 60

Query: 65 VYKPTSADFPWGGGYVRRPPILNNP 90
          VYKPTSADFPWGGGYVRRPPILNNP
Sbjct: 61 VYKPTSADFPWGGGYVRRPPILNNP 85

[Close]
BLAST of CsaV3_3G016070 vs. NCBI nr
Match: KGN57258.1 (hypothetical protein Csa_3G175590 [Cucumis sativus])

HSP 1 Score: 86.3 bits (212), Expect = 5.9e-14
Identity = 48/86 (55.81%), Postives = 62/86 (72.09%), Query Frame = 0 

Query: 7  SSPMKISLMLKLLFFATLLFIAYTTISATNNI--PLLHKPPIRKMAVGYRKGE-KAVVVP 66
          +SP +I L+LKLLFF+ LL   ++T+S TNN+  PL HKP IRK+ V  +  + KA VVP
Sbjct: 2  ASPWRIPLLLKLLFFSLLLI--FSTVSTTNNVVQPLFHKPRIRKIGVDKKTNDGKAGVVP 61

Query: 67 KVYKPTSADFPWGGGYVRRPPILNNP 90
          +V KPTS DFPWGGGY+   P L+NP
Sbjct: 62 RVIKPTSEDFPWGGGYIH--PHLSNP 83

[Close]
BLAST of CsaV3_3G016070 vs. TrEMBL
Match: tr|A0A0A0L8B2|A0A0A0L8B2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175600 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 5.4e-40
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0 

Query: 5  MASSPMKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVGYRKGEKAVVVPK 64
          MASSPMKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVGYRKGEKAVVVPK
Sbjct: 1  MASSPMKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVGYRKGEKAVVVPK 60

Query: 65 VYKPTSADFPWGGGYVRRPPILNNP 90
          VYKPTSADFPWGGGYVRRPPILNNP
Sbjct: 61 VYKPTSADFPWGGGYVRRPPILNNP 85

[Close]
BLAST of CsaV3_3G016070 vs. TrEMBL
Match: tr|A0A0A0L653|A0A0A0L653_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175590 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.9e-14
Identity = 48/86 (55.81%), Postives = 62/86 (72.09%), Query Frame = 0 

Query: 7  SSPMKISLMLKLLFFATLLFIAYTTISATNNI--PLLHKPPIRKMAVGYRKGE-KAVVVP 66
          +SP +I L+LKLLFF+ LL   ++T+S TNN+  PL HKP IRK+ V  +  + KA VVP
Sbjct: 2  ASPWRIPLLLKLLFFSLLLI--FSTVSTTNNVVQPLFHKPRIRKIGVDKKTNDGKAGVVP 61

Query: 67 KVYKPTSADFPWGGGYVRRPPILNNP 90
          +V KPTS DFPWGGGY+   P L+NP
Sbjct: 62 RVIKPTSEDFPWGGGYIH--PHLSNP 83

The following BLAST results are available for this feature:
BLAST of CsaV3_3G016070 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57259.18.2e-40100.00hypothetical protein Csa_3G175600 [Cucumis sativus][more]
KGN57258.15.9e-1455.81hypothetical protein Csa_3G175590 [Cucumis sativus][more]
BLAST of CsaV3_3G016070 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G016070 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G016070 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L8B2|A0A0A0L8B2_CUCSA5.4e-40100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175600 PE=4 SV=1[more]
tr|A0A0A0L653|A0A0A0L653_CUCSA3.9e-1455.81Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175590 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0007076 mitotic chromosome condensation
cellular_component GO:0005575 cellular_component
cellular_component GO:0000796 condensin complex
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function
molecular_function GO:0005524 ATP binding
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G016070.1CsaV3_3G016070.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G016070CmaCh16G001940Cucurbita maxima (Rimu)cmacucB0383
CsaV3_3G016070CmoCh16G002110Cucurbita moschata (Rifu)cmocucB0379
CsaV3_3G016070CmoCh04G003580Cucurbita moschata (Rifu)cmocucB0823
CsaV3_3G016070Cp4.1LG14g05580Cucurbita pepo (Zucchini)cpecucB0257
CsaV3_3G016070Lsi05G013290Bottle gourd (USVL1VR-Ls)cuclsiB245
CsaV3_3G016070Cla97C05G089060Watermelon (97103) v2cucwmbB206
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G016070Silver-seed gourdcarcucB0404
CsaV3_3G016070Silver-seed gourdcarcucB0909
CsaV3_3G016070Cucumber (Gy14) v2cgybcucB117
CsaV3_3G016070Cucumber (Gy14) v1cgycucB387
CsaV3_3G016070Cucurbita maxima (Rimu)cmacucB0838
CsaV3_3G016070Cucurbita pepo (Zucchini)cpecucB0492
CsaV3_3G016070Wild cucumber (PI 183967)cpicucB144
CsaV3_3G016070Bottle gourd (USVL1VR-Ls)cuclsiB229
CsaV3_3G016070Melon (DHL92) v3.5.1cucmeB236
CsaV3_3G016070Melon (DHL92) v3.6.1cucmedB230
CsaV3_3G016070Watermelon (Charleston Gray)cucwcgB225
CsaV3_3G016070Watermelon (97103) v1cucwmB239
CsaV3_3G016070Wax gourdcucwgoB272