CmoCh16G002110 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh16G002110
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr16 : 927790 .. 928292 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTCCCCCAGGAGGATCCGGATTTCCCTTCTCTTGAGGCTGCTTTTCTTTGCTTTGCTTCTCGTTGCCTCTACTGCTTCTACAGCCAACAGCAAGGCTTTGCTCCACTTTCCTCGTACTCGTAAGTTGTCTGTCTTGTTTCCCATTATTATTGTCTCTGATACGTACTAGTAGCCTCCATGGTTTCATGGTTTCAATTGGTTTCAGGCAAAATGGCGATGGAGGACGGACAGGTTGGGAAGGGTACATCAAAGAAACCAACTGCTGATGATGTCCCATGGGGAGGAGGCTATGTTCCTCCCATATTAAGCAACCACCCTTGATACCTCATTTGTTTGGATCAGCTCTGTGTTCTTCTTTTTGTTGCTGTTCTTGTCTTTTGGGGAGCATCCCATCCTATCTTATGTTCTTCACCCTACAATAACTTTAATGTTTCTCTTTTCTTTTTTATTTTAATGGAACGTTATATTACGTAACAAAATCTACCTCGTTTGTGAACA

mRNA sequence

ATGGCGTCCCCCAGGAGGATCCGGATTTCCCTTCTCTTGAGGCTGCTTTTCTTTGCTTTGCTTCTCGTTGCCTCTACTGCTTCTACAGCCAACAGCAAGGCTTTGCTCCACTTTCCTCGTACTCGCAAAATGGCGATGGAGGACGGACAGGTTGGGAAGGGTACATCAAAGAAACCAACTGCTGATGATGTCCCATGGGGAGGAGGCTATGTTCCTCCCATATTAAGCAACCACCCTTGATACCTCATTTGTTTGGATCAGCTCTGTGTTCTTCTTTTTGTTGCTGTTCTTGTCTTTTGGGGAGCATCCCATCCTATCTTATGTTCTTCACCCTACAATAACTTTAATGTTTCTCTTTTCTTTTTTATTTTAATGGAACGTTATATTACGTAACAAAATCTACCTCGTTTGTGAACA

Coding sequence (CDS)

ATGGCGTCCCCCAGGAGGATCCGGATTTCCCTTCTCTTGAGGCTGCTTTTCTTTGCTTTGCTTCTCGTTGCCTCTACTGCTTCTACAGCCAACAGCAAGGCTTTGCTCCACTTTCCTCGTACTCGCAAAATGGCGATGGAGGACGGACAGGTTGGGAAGGGTACATCAAAGAAACCAACTGCTGATGATGTCCCATGGGGAGGAGGCTATGTTCCTCCCATATTAAGCAACCACCCTTGA
Homology
[Close]
BLAST of CmoCh16G002110 vs. TrEMBL
Match: A0A0A0L653_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G175590 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 8.9e-09
Identity = 44/84 (52.38%), Postives = 56/84 (66.67%), Query Frame = 1 

Query: 1  MASPRRIRISLLLRLLFFALLLVASTASTANS--KALLHFPRTRKMAME----DGQVGKG 60
          MASP RI   LLL+LLFF+LLL+ ST ST N+  + L H PR RK+ ++    DG+ G  
Sbjct: 1  MASPWRI--PLLLKLLFFSLLLIFSTVSTTNNVVQPLFHKPRIRKIGVDKKTNDGKAGVV 60

Query: 61 TSK-KPTADDVPWGGGYVPPILSN 78
              KPT++D PWGGGY+ P LSN
Sbjct: 61 PRVIKPTSEDFPWGGGYIHPHLSN 82

[Close]
BLAST of CmoCh16G002110 vs. NCBI nr
Match: gi|700202125|gb|KGN57258.1| (hypothetical protein Csa_3G175590 [Cucumis sativus])

HSP 1 Score: 67.4 bits (163), Expect = 1.3e-08
Identity = 44/84 (52.38%), Postives = 56/84 (66.67%), Query Frame = 1 

Query: 1  MASPRRIRISLLLRLLFFALLLVASTASTANS--KALLHFPRTRKMAME----DGQVGKG 60
          MASP RI   LLL+LLFF+LLL+ ST ST N+  + L H PR RK+ ++    DG+ G  
Sbjct: 1  MASPWRI--PLLLKLLFFSLLLIFSTVSTTNNVVQPLFHKPRIRKIGVDKKTNDGKAGVV 60

Query: 61 TSK-KPTADDVPWGGGYVPPILSN 78
              KPT++D PWGGGY+ P LSN
Sbjct: 61 PRVIKPTSEDFPWGGGYIHPHLSN 82

The following BLAST results are available for this feature:
BLAST of CmoCh16G002110 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh16G002110 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L653_CUCSA8.9e-0952.38Uncharacterized protein OS=Cucumis sativus GN=Csa_3G175590 PE=4 SV=1[more]
BLAST of CmoCh16G002110 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh16G002110 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202125|gb|KGN57258.1|1.3e-0852.38hypothetical protein Csa_3G175590 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh16G002110.1CmoCh16G002110.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh16G002110Cla006277Watermelon (97103) v1cmowmB310
CmoCh16G002110Cp4.1LG14g05580Cucurbita pepo (Zucchini)cmocpeB307
CmoCh16G002110CsaV3_3G016070Cucumber (Chinese Long) v3cmocucB0379
CmoCh16G002110Carg16744Silver-seed gourdcarcmoB1175
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh16G002110Melon (DHL92) v3.6.1cmomedB331
CmoCh16G002110Silver-seed gourdcarcmoB0509
CmoCh16G002110Watermelon (97103) v2cmowmbB331
CmoCh16G002110Wax gourdcmowgoB0436
CmoCh16G002110Cucurbita moschata (Rifu)cmocmoB286
CmoCh16G002110Cucumber (Gy14) v1cgycmoB0704
CmoCh16G002110Cucurbita maxima (Rimu)cmacmoB322
CmoCh16G002110Cucurbita maxima (Rimu)cmacmoB701
CmoCh16G002110Wild cucumber (PI 183967)cmocpiB325
CmoCh16G002110Cucumber (Chinese Long) v2cmocuB317
CmoCh16G002110Melon (DHL92) v3.5.1cmomeB289
CmoCh16G002110Watermelon (Charleston Gray)cmowcgB290
CmoCh16G002110Cucurbita pepo (Zucchini)cmocpeB311
CmoCh16G002110Bottle gourd (USVL1VR-Ls)cmolsiB300
CmoCh16G002110Cucumber (Gy14) v2cgybcmoB312