Carg16744 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg16744
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_087 : 246268 .. 246824 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTAAACAAAGTTAGGCCTTGAGCTACCTCCAAAAGCTTATTGAAAAAATGGCGTCCCCCAGGAGGATCCGGATTTCCCTTCTCTTGAGGCTGCTTTTCTTTGCTTTGCTTCTCGTTGCCTCTACTGCTTCTGCAGCCAACAGCAAGGCTTTGCTCCACAATCCTCGTACTCGTAAGTTGTCTGTCTTGTTTCCCATTATTATTGTCTCTGATACGTACTAGTAGCATCCATGGTTTCATGGTTTCAACTGGTTTCAATTGGTTTCAATTGGTTTCAGCCAAAATGGCGATGGAGTATGGACAGGTTGGGAAGGGTACATCAAAGAAACCAACTGCTGATGATGTCCCATGGGGAGGAGGCTATGTTCCTCCCATATTAAGCAACCACCCTTGATACCTCATTTGTTTGGATCAGCTCTGTGTTCTTCTTTTTGTTGCTGTTCTTGTCTTTTGGGGAGCATCCCATCCAATCTTATGTTCTTCACCCTACAATAACTTCAATGTTTCTCTTTTCTTTTTTATTTTAATGGGACGTTGTATCACGTAACAAAATCTACA

mRNA sequence

GTAAACAAAGTTAGGCCTTGAGCTACCTCCAAAAGCTTATTGAAAAAATGGCGTCCCCCAGGAGGATCCGGATTTCCCTTCTCTTGAGGCTGCTTTTCTTTGCTTTGCTTCTCGTTGCCTCTACTGCTTCTGCAGCCAACAGCAAGGCTTTGCTCCACAATCCTCGTACTCCCAAAATGGCGATGGAGTATGGACAGGTTGGGAAGGGTACATCAAAGAAACCAACTGCTGATGATGTCCCATGGGGAGGAGGCTATGTTCCTCCCATATTAAGCAACCACCCTTGATACCTCATTTGTTTGGATCAGCTCTGTGTTCTTCTTTTTGTTGCTGTTCTTGTCTTTTGGGGAGCATCCCATCCAATCTTATGTTCTTCACCCTACAATAACTTCAATGTTTCTCTTTTCTTTTTTATTTTAATGGGACGTTGTATCACGTAACAAAATCTACA

Coding sequence (CDS)

ATGGCGTCCCCCAGGAGGATCCGGATTTCCCTTCTCTTGAGGCTGCTTTTCTTTGCTTTGCTTCTCGTTGCCTCTACTGCTTCTGCAGCCAACAGCAAGGCTTTGCTCCACAATCCTCGTACTCCCAAAATGGCGATGGAGTATGGACAGGTTGGGAAGGGTACATCAAAGAAACCAACTGCTGATGATGTCCCATGGGGAGGAGGCTATGTTCCTCCCATATTAAGCAACCACCCTTGA

Protein sequence

MASPRRIRISLLLRLLFFALLLVASTASAANSKALLHNPRTPKMAMEYGQVGKGTSKKPTADDVPWGGGYVPPILSNHP

Homology

[Close]

BLAST of Carg16744 vs. NCBI nr
Match: KGN57258.1 (hypothetical protein Csa_3G175590 [Cucumis sativus])

HSP 1 Score: 60.5 bits (145), Expect = 3.0e-06
Identity = 41/84 (48.81%), Postives = 53/84 (63.10%), Query Frame = 0


Query: 1  MASPRRIRISLLLRLLFFALLLVASTASAANS--KALLHNPRTPKMAMEY----GQVGKG 60
          MASP   RI LLL+LLFF+LLL+ ST S  N+  + L H PR  K+ ++     G+ G  
Sbjct: 1  MASP--WRIPLLLKLLFFSLLLIFSTVSTTNNVVQPLFHKPRIRKIGVDKKTNDGKAGVV 60

Query: 61 TSK-KPTADDVPWGGGYVPPILSN 78
              KPT++D PWGGGY+ P LSN
Sbjct: 61 PRVIKPTSEDFPWGGGYIHPHLSN 82

[Close]

BLAST of Carg16744 vs. NCBI nr
Match: KGN57259.1 (hypothetical protein Csa_3G175600 [Cucumis sativus])

HSP 1 Score: 59.3 bits (142), Expect = 6.8e-06
Identity = 40/79 (50.63%), Postives = 50/79 (63.29%), Query Frame = 0


Query: 7  IRISLLLRLLFFALLL--VASTASAANSKALLHNPRTPKMAMEYGQVGKGT----SKKPT 66
          ++ISL+L+LLFFA LL    +T SA N+  LLH P   KMA+ Y +  K        KPT
Sbjct: 6  MKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVGYRKGEKAVVVPKVYKPT 65

Query: 67 ADDVPWGGGYV--PPILSN 78
          + D PWGGGYV  PPIL+N
Sbjct: 66 SADFPWGGGYVRRPPILNN 84

[Close]

BLAST of Carg16744 vs. NCBI nr
Match: XP_022141390.1 (uncharacterized protein LOC111011803 [Momordica charantia])

HSP 1 Score: 55.5 bits (132), Expect = 9.8e-05
Identity = 35/74 (47.30%), Postives = 48/74 (64.86%), Query Frame = 0


Query: 7   IRISLLLRLLFFALLLVASTASAANSKALLHNPRTPKMAMEYGQVGKGTSK-KPTADDVP 66
           +RIS +L+L FFALLL+AS  S A++ ++   PR  K+ MEY  VGK   + K  + D P
Sbjct: 45  LRISFVLKLFFFALLLIASRVS-ASTPSIHKRPRIRKLGMEYRSVGKAVLRAKAASYDFP 104

Query: 67  WGGGYVPPILSNHP 80
           W GGY PP  +N+P
Sbjct: 105 WKGGYNPP--NNNP 115

[Close]

BLAST of Carg16744 vs. TrEMBL
Match: tr|A0A0A0L653|A0A0A0L653_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175590 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.0e-06
Identity = 41/84 (48.81%), Postives = 53/84 (63.10%), Query Frame = 0


Query: 1  MASPRRIRISLLLRLLFFALLLVASTASAANS--KALLHNPRTPKMAMEY----GQVGKG 60
          MASP   RI LLL+LLFF+LLL+ ST S  N+  + L H PR  K+ ++     G+ G  
Sbjct: 1  MASP--WRIPLLLKLLFFSLLLIFSTVSTTNNVVQPLFHKPRIRKIGVDKKTNDGKAGVV 60

Query: 61 TSK-KPTADDVPWGGGYVPPILSN 78
              KPT++D PWGGGY+ P LSN
Sbjct: 61 PRVIKPTSEDFPWGGGYIHPHLSN 82

[Close]

BLAST of Carg16744 vs. TrEMBL
Match: tr|A0A0A0L8B2|A0A0A0L8B2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175600 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.5e-06
Identity = 40/79 (50.63%), Postives = 50/79 (63.29%), Query Frame = 0


Query: 7  IRISLLLRLLFFALLL--VASTASAANSKALLHNPRTPKMAMEYGQVGKGT----SKKPT 66
          ++ISL+L+LLFFA LL    +T SA N+  LLH P   KMA+ Y +  K        KPT
Sbjct: 6  MKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVGYRKGEKAVVVPKVYKPT 65

Query: 67 ADDVPWGGGYV--PPILSN 78
          + D PWGGGYV  PPIL+N
Sbjct: 66 SADFPWGGGYVRRPPILNN 84

The following BLAST results are available for this feature:

BLAST of Carg16744 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57258.1	3.0e-06	48.81	hypothetical protein Csa_3G175590 [Cucumis sativus]	[more]
KGN57259.1	6.8e-06	50.63	hypothetical protein Csa_3G175600 [Cucumis sativus]	[more]
XP_022141390.1	9.8e-05	47.30	uncharacterized protein LOC111011803 [Momordica charantia]	[more]

BLAST of Carg16744 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg16744 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg16744 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L653\|A0A0A0L653_CUCSA	2.0e-06	48.81	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175590 PE=4 SV=1	[more]
tr\|A0A0A0L8B2\|A0A0A0L8B2_CUCSA	4.5e-06	50.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175600 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16744-RA	Carg16744-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..79

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg16744	Cla006277	Watermelon (97103) v1	carwmB0874
Carg16744	ClCG05G007300	Watermelon (Charleston Gray)	carwcgB0847
Carg16744	CmoCh16G002110	Cucurbita moschata (Rifu)	carcmoB1175
Carg16744	Cp4.1LG14g05580	Cucurbita pepo (Zucchini)	carcpeB1215

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg16744	Wax gourd	carwgoB1019
Carg16744	Silver-seed gourd	carcarB406
Carg16744	Cucumber (Gy14) v2	carcgybB0859
Carg16744	Cucumber (Gy14) v1	carcgyB0993
Carg16744	Cucurbita maxima (Rimu)	carcmaB1206
Carg16744	Cucurbita maxima (Rimu)	carcmaB1209
Carg16744	Cucurbita moschata (Rifu)	carcmoB1177
Carg16744	Cucurbita pepo (Zucchini)	carcpeB1216
Carg16744	Wild cucumber (PI 183967)	carcpiB0905
Carg16744	Cucumber (Chinese Long) v2	carcuB0885
Carg16744	Cucumber (Chinese Long) v3	carcucB0909
Carg16744	Bottle gourd (USVL1VR-Ls)	carlsiB791
Carg16744	Melon (DHL92) v3.5.1	carmeB0859
Carg16744	Melon (DHL92) v3.6.1	carmedB0869
Carg16744	Watermelon (97103) v1	carwmB0875
Carg16744	Watermelon (97103) v2	carwmbB0910