Cp4.1LG14g05580 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG14g05580
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG14 : 908107 .. 908851 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCCATGAAACCCGAGTGTCAACCACTCAAAATGGCCGACATGTTTGACTCTTGGAGCTCACGAGTGGAAGTGGAAGTAGCAACAGCCACAGCCACAGCCACAGCGACGAGCTGAAGTCTTGTAAGTTGGGGCATCTTAAATATAAGTAAACAAAGTTAGGCCTTGAGCTACCTCCAAAAGCTTATTAAAAAACATGGCGTCCCCCAGGAGGATCCGGATTTCCCTTCTCTTGAAGCTCCTTTTCTTCGCTTTGCTTCTCATTGCCTCCACTGCCTCTGCAACCAACAGCAACCCTTTACTCCACAATCCTCGTACTCGTAAGTTGTCTGTCTTGTTTCCCATTACTATTCTCTGATACGTAGTAGTAGTATCCATGGTTTCATGGTTTCAATTGGTTTCAGGCAAAATGGCAATGGAGTCCAGAGAGGTTGGGAAGGGTACAGCAAAGAAACCAACTGCTGATGATGTCCCATGGGGAGGAGGCTATGTTCCTCCCATATTAAGCAACCACCCTTGATACCTCATTTGTCTGGATCAGCTCTGTGTTCTTCTTTTTGTTGCTGTTCTTGTCTTTTGGGGAGCATCCCATCCAATCTTATGTTCTTCACCCTACAATAACTTTAATGTTTCTCTTTTTCTTTTTGATTTTAATAGAAAATTGTATTACGTAACAAAATCTACCTCATATGTGAACATATTCTTAAAATAATGTCATGAACTTAAAAAAATCGTTAAACAATTACAA

mRNA sequence

GCCATGAAACCCGAGTGTCAACCACTCAAAATGGCCGACATGTTTGACTCTTGGAGCTCACGAGTGGAAGTGGAAGTAGCAACAGCCACAGCCACAGCCACAGCGACGAGCTGAAGTCTTGTAAGTTGGGGCATCTTAAATATAAGTAAACAAAGTTAGGCCTTGAGCTACCTCCAAAAGCTTATTAAAAAACATGGCGTCCCCCAGGAGGATCCGGATTTCCCTTCTCTTGAAGCTCCTTTTCTTCGCTTTGCTTCTCATTGCCTCCACTGCCTCTGCAACCAACAGCAACCCTTTACTCCACAATCCTCGTACTCGCAAAATGGCAATGGAGTCCAGAGAGGTTGGGAAGGGTACAGCAAAGAAACCAACTGCTGATGATGTCCCATGGGGAGGAGGCTATGTTCCTCCCATATTAAGCAACCACCCTTGATACCTCATTTGTCTGGATCAGCTCTGTGTTCTTCTTTTTGTTGCTGTTCTTGTCTTTTGGGGAGCATCCCATCCAATCTTATGTTCTTCACCCTACAATAACTTTAATGTTTCTCTTTTTCTTTTTGATTTTAATAGAAAATTGTATTACGTAACAAAATCTACCTCATATGTGAACATATTCTTAAAATAATGTCATGAACTTAAAAAAATCGTTAAACAATTACAA

Coding sequence (CDS)

ATGGCGTCCCCCAGGAGGATCCGGATTTCCCTTCTCTTGAAGCTCCTTTTCTTCGCTTTGCTTCTCATTGCCTCCACTGCCTCTGCAACCAACAGCAACCCTTTACTCCACAATCCTCGTACTCGCAAAATGGCAATGGAGTCCAGAGAGGTTGGGAAGGGTACAGCAAAGAAACCAACTGCTGATGATGTCCCATGGGGAGGAGGCTATGTTCCTCCCATATTAAGCAACCACCCTTGA

Protein sequence

MASPRRIRISLLLKLLFFALLLIASTASATNSNPLLHNPRTRKMAMESREVGKGTAKKPTADDVPWGGGYVPPILSNHP
Homology
[Close]
BLAST of Cp4.1LG14g05580 vs. TrEMBL
Match: A0A0A0L653_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G175590 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.6e-10
Identity = 46/85 (54.12%), Postives = 56/85 (65.88%), Query Frame = 1 

Query: 1  MASPRRIRISLLLKLLFFALLLIASTASATNS--NPLLHNPRTRKMAMESREVGKGTAK- 60
          MASP RI   LLLKLLFF+LLLI ST S TN+   PL H PR RK+ ++ ++   G A  
Sbjct: 1  MASPWRI--PLLLKLLFFSLLLIFSTVSTTNNVVQPLFHKPRIRKIGVD-KKTNDGKAGV 60

Query: 61 -----KPTADDVPWGGGYVPPILSN 78
               KPT++D PWGGGY+ P LSN
Sbjct: 61 VPRVIKPTSEDFPWGGGYIHPHLSN 82

[Close]
BLAST of Cp4.1LG14g05580 vs. TrEMBL
Match: A0A0A0L8B2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G175600 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.1e-09
Identity = 44/79 (55.70%), Postives = 53/79 (67.09%), Query Frame = 1 

Query: 7  IRISLLLKLLFFALLLIA--STASATNSNPLLHNPRTRKMAMESREVGKGT----AKKPT 66
          ++ISL+LKLLFFA LL    +T SATN+ PLLH P  RKMA+  R+  K        KPT
Sbjct: 6  MKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVGYRKGEKAVVVPKVYKPT 65

Query: 67 ADDVPWGGGYV--PPILSN 78
          + D PWGGGYV  PPIL+N
Sbjct: 66 SADFPWGGGYVRRPPILNN 84

[Close]
BLAST of Cp4.1LG14g05580 vs. NCBI nr
Match: gi|700202125|gb|KGN57258.1| (hypothetical protein Csa_3G175590 [Cucumis sativus])

HSP 1 Score: 72.0 bits (175), Expect = 5.2e-10
Identity = 46/85 (54.12%), Postives = 56/85 (65.88%), Query Frame = 1 

Query: 1  MASPRRIRISLLLKLLFFALLLIASTASATNS--NPLLHNPRTRKMAMESREVGKGTAK- 60
          MASP RI   LLLKLLFF+LLLI ST S TN+   PL H PR RK+ ++ ++   G A  
Sbjct: 1  MASPWRI--PLLLKLLFFSLLLIFSTVSTTNNVVQPLFHKPRIRKIGVD-KKTNDGKAGV 60

Query: 61 -----KPTADDVPWGGGYVPPILSN 78
               KPT++D PWGGGY+ P LSN
Sbjct: 61 VPRVIKPTSEDFPWGGGYIHPHLSN 82

[Close]
BLAST of Cp4.1LG14g05580 vs. NCBI nr
Match: gi|700202126|gb|KGN57259.1| (hypothetical protein Csa_3G175600 [Cucumis sativus])

HSP 1 Score: 68.9 bits (167), Expect = 4.4e-09
Identity = 44/79 (55.70%), Postives = 53/79 (67.09%), Query Frame = 1 

Query: 7  IRISLLLKLLFFALLLIA--STASATNSNPLLHNPRTRKMAMESREVGKGT----AKKPT 66
          ++ISL+LKLLFFA LL    +T SATN+ PLLH P  RKMA+  R+  K        KPT
Sbjct: 6  MKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVGYRKGEKAVVVPKVYKPT 65

Query: 67 ADDVPWGGGYV--PPILSN 78
          + D PWGGGYV  PPIL+N
Sbjct: 66 SADFPWGGGYVRRPPILNN 84

The following BLAST results are available for this feature:
BLAST of Cp4.1LG14g05580 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG14g05580 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L653_CUCSA3.6e-1054.12Uncharacterized protein OS=Cucumis sativus GN=Csa_3G175590 PE=4 SV=1[more]
A0A0A0L8B2_CUCSA3.1e-0955.70Uncharacterized protein OS=Cucumis sativus GN=Csa_3G175600 PE=4 SV=1[more]
BLAST of Cp4.1LG14g05580 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG14g05580 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202125|gb|KGN57258.1|5.2e-1054.12hypothetical protein Csa_3G175590 [Cucumis sativus][more]
gi|700202126|gb|KGN57259.1|4.4e-0955.70hypothetical protein Csa_3G175600 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0007076 mitotic chromosome condensation
cellular_component GO:0005575 cellular_component
cellular_component GO:0000796 condensin complex
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function
molecular_function GO:0005524 ATP binding
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG14g05580.1Cp4.1LG14g05580.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG14g05580CmaCh16G001940Cucurbita maxima (Rimu)cmacpeB344
Cp4.1LG14g05580CmoCh16G002110Cucurbita moschata (Rifu)cmocpeB307
Cp4.1LG14g05580Cla006277Watermelon (97103) v1cpewmB227
Cp4.1LG14g05580ClCG05G007300Watermelon (Charleston Gray)cpewcgB207
Cp4.1LG14g05580CsaV3_3G016070Cucumber (Chinese Long) v3cpecucB0257
Cp4.1LG14g05580Carg16744Silver-seed gourdcarcpeB1215
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG14g05580Wax gourdcpewgoB0298
Cp4.1LG14g05580Cucurbita pepo (Zucchini)cpecpeB234
Cp4.1LG14g05580Cucurbita pepo (Zucchini)cpecpeB245
Cp4.1LG14g05580Cucumber (Gy14) v1cgycpeB0673
Cp4.1LG14g05580Cucurbita maxima (Rimu)cmacpeB715
Cp4.1LG14g05580Cucurbita moschata (Rifu)cmocpeB668
Cp4.1LG14g05580Wild cucumber (PI 183967)cpecpiB217
Cp4.1LG14g05580Cucumber (Chinese Long) v2cpecuB214
Cp4.1LG14g05580Bottle gourd (USVL1VR-Ls)cpelsiB172
Cp4.1LG14g05580Melon (DHL92) v3.5.1cpemeB190
Cp4.1LG14g05580Cucumber (Gy14) v2cgybcpeB327
Cp4.1LG14g05580Melon (DHL92) v3.6.1cpemedB233
Cp4.1LG14g05580Silver-seed gourdcarcpeB0523
Cp4.1LG14g05580Silver-seed gourdcarcpeB0998