CSPI03G15850 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI03G15850
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr3 : 11886017 .. 11886662 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCCCTTGGAGAATTCCCCTTTTGTTGAAGCTTCTTTTCTTTTCTTTGCTTCTCATTTTCTCTACTGTTTCTACAACCAACAACGTCGTCCAGCCCCTGTTCCACAAACCTCGCATTCGTAAGTCATCATTCTCGTTATTATCTAACATGCCTATTCTTTTTCAATATGTTTTAAAAACGTATTTGAAACGATTTTGAAAATAGTATGTTTTTAGTCGTGGTTTGTTCTTATTTTGAATACTCTCTCATTGTTAATTTTTTTCACCTATTAAATTGACCAAGTCAATCCGGATCCAACAGTAAACCCTCGTGAATTAAATCTTATCAAAATGGATATATAACATAGACCCTAATTTAGGAAGCTTATTTTTAAAGAAAGCATATGCTATGCAAGACATTATATATGAACCATTTTACTTGATCTCCCCCTACAAAGAAAATGACAACCCATAAGTTAAATTGGTAAAAGTATATATGGTTTCATTTTGAGTTCTATATGTAAATGGTTTCAGGTAAGATTGGTGTGGATAAGAAAACTAATGATGGGAAGGCTGGTGTTGTACCAAGAGTAATAAAACCAACTTCTGAAGATTTCCCATGGGGAGGAGGTTATATTCATCCACACTTAAGCAACCCATGA

mRNA sequence

ATGGCTTCCCCTTGGAGAATTCCCCTTTTGTTGAAGCTTCTTTTCTTTTCTTTGCTTCTCATTTTCTCTACTGTTTCTACAACCAACAACGTCGTCCAGCCCCTGTTCCACAAACCTCGCATTCGTAAGATTGGTGTGGATAAGAAAACTAATGATGGGAAGGCTGGTGTTGTACCAAGAGTAATAAAACCAACTTCTGAAGATTTCCCATGGGGAGGAGGTTATATTCATCCACACTTAAGCAACCCATGA

Coding sequence (CDS)

ATGGCTTCCCCTTGGAGAATTCCCCTTTTGTTGAAGCTTCTTTTCTTTTCTTTGCTTCTCATTTTCTCTACTGTTTCTACAACCAACAACGTCGTCCAGCCCCTGTTCCACAAACCTCGCATTCGTAAGATTGGTGTGGATAAGAAAACTAATGATGGGAAGGCTGGTGTTGTACCAAGAGTAATAAAACCAACTTCTGAAGATTTCCCATGGGGAGGAGGTTATATTCATCCACACTTAAGCAACCCATGA
Homology
[Close]
BLAST of CSPI03G15850 vs. TrEMBL
Match: A0A0A0L653_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G175590 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 7.2e-41
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1 

Query: 1  MASPWRIPLLLKLLFFSLLLIFSTVSTTNNVVQPLFHKPRIRKIGVDKKTNDGKAGVVPR 60
          MASPWRIPLLLKLLFFSLLLIFSTVSTTNNVVQPLFHKPRIRKIGVDKKTNDGKAGVVPR
Sbjct: 1  MASPWRIPLLLKLLFFSLLLIFSTVSTTNNVVQPLFHKPRIRKIGVDKKTNDGKAGVVPR 60

Query: 61 VIKPTSEDFPWGGGYIHPHLSNP 84
          VIKPTSEDFPWGGGYIHPHLSNP
Sbjct: 61 VIKPTSEDFPWGGGYIHPHLSNP 83

[Close]
BLAST of CSPI03G15850 vs. TrEMBL
Match: A0A0A0L8B2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G175600 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 6.8e-15
Identity = 48/86 (55.81%), Postives = 62/86 (72.09%), Query Frame = 1 

Query: 2  ASPWRIPLLLKLLFFSLLLI--FSTVSTTNNVVQPLFHKPRIRKIGVDKKTNDGKAGVVP 61
          +SP +I L+LKLLFF+ LL   ++T+S TNN+  PL HKP IRK+ V  +  + KA VVP
Sbjct: 3  SSPMKISLMLKLLFFATLLFIAYTTISATNNI--PLLHKPPIRKMAVGYRKGE-KAVVVP 62

Query: 62 RVIKPTSEDFPWGGGYIH--PHLSNP 84
          +V KPTS DFPWGGGY+   P L+NP
Sbjct: 63 KVYKPTSADFPWGGGYVRRPPILNNP 85

[Close]
BLAST of CSPI03G15850 vs. NCBI nr
Match: gi|700202125|gb|KGN57258.1| (hypothetical protein Csa_3G175590 [Cucumis sativus])

HSP 1 Score: 174.1 bits (440), Expect = 1.0e-40
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1 

Query: 1  MASPWRIPLLLKLLFFSLLLIFSTVSTTNNVVQPLFHKPRIRKIGVDKKTNDGKAGVVPR 60
          MASPWRIPLLLKLLFFSLLLIFSTVSTTNNVVQPLFHKPRIRKIGVDKKTNDGKAGVVPR
Sbjct: 1  MASPWRIPLLLKLLFFSLLLIFSTVSTTNNVVQPLFHKPRIRKIGVDKKTNDGKAGVVPR 60

Query: 61 VIKPTSEDFPWGGGYIHPHLSNP 84
          VIKPTSEDFPWGGGYIHPHLSNP
Sbjct: 61 VIKPTSEDFPWGGGYIHPHLSNP 83

[Close]
BLAST of CSPI03G15850 vs. NCBI nr
Match: gi|700202126|gb|KGN57259.1| (hypothetical protein Csa_3G175600 [Cucumis sativus])

HSP 1 Score: 87.8 bits (216), Expect = 9.7e-15
Identity = 48/86 (55.81%), Postives = 62/86 (72.09%), Query Frame = 1 

Query: 2  ASPWRIPLLLKLLFFSLLLI--FSTVSTTNNVVQPLFHKPRIRKIGVDKKTNDGKAGVVP 61
          +SP +I L+LKLLFF+ LL   ++T+S TNN+  PL HKP IRK+ V  +  + KA VVP
Sbjct: 3  SSPMKISLMLKLLFFATLLFIAYTTISATNNI--PLLHKPPIRKMAVGYRKGE-KAVVVP 62

Query: 62 RVIKPTSEDFPWGGGYIH--PHLSNP 84
          +V KPTS DFPWGGGY+   P L+NP
Sbjct: 63 KVYKPTSADFPWGGGYVRRPPILNNP 85

The following BLAST results are available for this feature:
BLAST of CSPI03G15850 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI03G15850 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L653_CUCSA7.2e-41100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G175590 PE=4 SV=1[more]
A0A0A0L8B2_CUCSA6.8e-1555.81Uncharacterized protein OS=Cucumis sativus GN=Csa_3G175600 PE=4 SV=1[more]
BLAST of CSPI03G15850 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI03G15850 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202125|gb|KGN57258.1|1.0e-40100.00hypothetical protein Csa_3G175590 [Cucumis sativus][more]
gi|700202126|gb|KGN57259.1|9.7e-1555.81hypothetical protein Csa_3G175600 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G15850.1CSPI03G15850.1mRNA