CsGy3G015940 (gene) Cucumber (Gy14) v2

Overview
NameCsGy3G015940
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr3 : 11840516 .. 11841453 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAAAATTAGCTCTTCACCTAGCTAACTCCATCATCTATGCTTATTAAATGCCCCAAAAAATGGCTTCCCCTTGGAGAATTCCCCTTTTGTTGAAGCTTCTTTTCTTTTCTTTGCTTCTCATTTTCTCTACTGTTTCTACAACCAACAACGTCGTCCAGCCCCTGTTCCACAAACCTCGCATTCGTAAGTCATCATTCTCGTTATTATCTAACATGCCTATTCTTTTTCAATATGTTTTAAAAACGTATTTGAAACGATTTTGAAAATAGTATGTTTTTAGTCGTGGTTTGTTCTTATTTTGAATACTCTCTCATTGTTAATTTTTTTCACCTATTAAATTGACCAAGTCAATCCGGATCCAACAGTAAACCCTCGTGAATTAAATCTTATCAAAATGGATATATAACATAGACCCTAATTTAGGAAGCTTATTTTTAAAGAAAGCATATGCTATGCAAGACATTATATATGAACCATTTTACTTGATCTCCCCCTACAAAGAAAATGACAACCCATAAGTTAAATTGGTAAAAGTATATATGGTTTCATTTTGAGTTCTATATGTAAATGGTTTCAGGTAAGATTGGTGTGGATAAGAAAACTAATGATGGGAAGGCTGGTGTTGTACCAAGAGTAATAAAACCAACTTCTGAAGATTTCCCATGGGGAGGAGGTTATATTCATCCACACTTAAGCAACCCATGATCACATTAATTTTAAACTATGTTTGGTTTAAATCAAGCTCTGTAATTTGTTTTTATTTGGTTGGTGGTGTTGACTTTTTTTGAAGCATCAATCTCATCTTCTTAACCCTACTCTATATATATATATATATATATTAATTGTTATTTCTCTCTCATCCATTATTTTGTATTTTCAATCAGAATGTGCCTTTGTTAAGGCTCTATTCATCAATCCATCTAAAAATTACTTGTTG

mRNA sequence

CAAAAATTAGCTCTTCACCTAGCTAACTCCATCATCTATGCTTATTAAATGCCCCAAAAAATGGCTTCCCCTTGGAGAATTCCCCTTTTGTTGAAGCTTCTTTTCTTTTCTTTGCTTCTCATTTTCTCTACTGTTTCTACAACCAACAACGTCGTCCAGCCCCTGTTCCACAAACCTCGCATTCGTAAGATTGGTGTGGATAAGAAAACTAATGATGGGAAGGCTGGTGTTGTACCAAGAGTAATAAAACCAACTTCTGAAGATTTCCCATGGGGAGGAGGTTATATTCATCCACACTTAAGCAACCCATGATCACATTAATTTTAAACTATGTTTGGTTTAAATCAAGCTCTGTAATTTGTTTTTATTTGGTTGGTGGTGTTGACTTTTTTTGAAGCATCAATCTCATCTTCTTAACCCTACTCTATATATATATATATATATATTAATTGTTATTTCTCTCTCATCCATTATTTTGTATTTTCAATCAGAATGTGCCTTTGTTAAGGCTCTATTCATCAATCCATCTAAAAATTACTTGTTG

Coding sequence (CDS)

ATGCCCCAAAAAATGGCTTCCCCTTGGAGAATTCCCCTTTTGTTGAAGCTTCTTTTCTTTTCTTTGCTTCTCATTTTCTCTACTGTTTCTACAACCAACAACGTCGTCCAGCCCCTGTTCCACAAACCTCGCATTCGTAAGATTGGTGTGGATAAGAAAACTAATGATGGGAAGGCTGGTGTTGTACCAAGAGTAATAAAACCAACTTCTGAAGATTTCCCATGGGGAGGAGGTTATATTCATCCACACTTAAGCAACCCATGA

Protein sequence

MPQKMASPWRIPLLLKLLFFSLLLIFSTVSTTNNVVQPLFHKPRIRKIGVDKKTNDGKAGVVPRVIKPTSEDFPWGGGYIHPHLSNP
Homology
[Close]
BLAST of CsGy3G015940 vs. NCBI nr
Match: KGN57258.1 (hypothetical protein Csa_3G175590 [Cucumis sativus])

HSP 1 Score: 173.3 bits (438), Expect = 3.6e-40
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0 

Query: 5  MASPWRIPLLLKLLFFSLLLIFSTVSTTNNVVQPLFHKPRIRKIGVDKKTNDGKAGVVPR 64
          MASPWRIPLLLKLLFFSLLLIFSTVSTTNNVVQPLFHKPRIRKIGVDKKTNDGKAGVVPR
Sbjct: 1  MASPWRIPLLLKLLFFSLLLIFSTVSTTNNVVQPLFHKPRIRKIGVDKKTNDGKAGVVPR 60

Query: 65 VIKPTSEDFPWGGGYIHPHLSNP 88
          VIKPTSEDFPWGGGYIHPHLSNP
Sbjct: 61 VIKPTSEDFPWGGGYIHPHLSNP 83

[Close]
BLAST of CsGy3G015940 vs. NCBI nr
Match: KGN57259.1 (hypothetical protein Csa_3G175600 [Cucumis sativus])

HSP 1 Score: 87.0 bits (214), Expect = 3.3e-14
Identity = 48/86 (55.81%), Postives = 62/86 (72.09%), Query Frame = 0 

Query: 6  ASPWRIPLLLKLLFFSLLLI--FSTVSTTNNVVQPLFHKPRIRKIGVDKKTNDGKAGVVP 65
          +SP +I L+LKLLFF+ LL   ++T+S TNN+  PL HKP IRK+ V  +  + KA VVP
Sbjct: 3  SSPMKISLMLKLLFFATLLFIAYTTISATNNI--PLLHKPPIRKMAVGYRKGE-KAVVVP 62

Query: 66 RVIKPTSEDFPWGGGYIH--PHLSNP 88
          +V KPTS DFPWGGGY+   P L+NP
Sbjct: 63 KVYKPTSADFPWGGGYVRRPPILNNP 85

[Close]
BLAST of CsGy3G015940 vs. TrEMBL
Match: tr|A0A0A0L653|A0A0A0L653_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175590 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 2.3e-40
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0 

Query: 5  MASPWRIPLLLKLLFFSLLLIFSTVSTTNNVVQPLFHKPRIRKIGVDKKTNDGKAGVVPR 64
          MASPWRIPLLLKLLFFSLLLIFSTVSTTNNVVQPLFHKPRIRKIGVDKKTNDGKAGVVPR
Sbjct: 1  MASPWRIPLLLKLLFFSLLLIFSTVSTTNNVVQPLFHKPRIRKIGVDKKTNDGKAGVVPR 60

Query: 65 VIKPTSEDFPWGGGYIHPHLSNP 88
          VIKPTSEDFPWGGGYIHPHLSNP
Sbjct: 61 VIKPTSEDFPWGGGYIHPHLSNP 83

[Close]
BLAST of CsGy3G015940 vs. TrEMBL
Match: tr|A0A0A0L8B2|A0A0A0L8B2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175600 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.2e-14
Identity = 48/86 (55.81%), Postives = 62/86 (72.09%), Query Frame = 0 

Query: 6  ASPWRIPLLLKLLFFSLLLI--FSTVSTTNNVVQPLFHKPRIRKIGVDKKTNDGKAGVVP 65
          +SP +I L+LKLLFF+ LL   ++T+S TNN+  PL HKP IRK+ V  +  + KA VVP
Sbjct: 3  SSPMKISLMLKLLFFATLLFIAYTTISATNNI--PLLHKPPIRKMAVGYRKGE-KAVVVP 62

Query: 66 RVIKPTSEDFPWGGGYIH--PHLSNP 88
          +V KPTS DFPWGGGY+   P L+NP
Sbjct: 63 KVYKPTSADFPWGGGYVRRPPILNNP 85

The following BLAST results are available for this feature:
BLAST of CsGy3G015940 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57258.13.6e-40100.00hypothetical protein Csa_3G175590 [Cucumis sativus][more]
KGN57259.13.3e-1455.81hypothetical protein Csa_3G175600 [Cucumis sativus][more]
BLAST of CsGy3G015940 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy3G015940 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy3G015940 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L653|A0A0A0L653_CUCSA2.3e-40100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175590 PE=4 SV=1[more]
tr|A0A0A0L8B2|A0A0A0L8B2_CUCSA2.2e-1455.81Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175600 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy3G015940.1CsGy3G015940.1mRNA