Lsi05G013310 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi05G013310
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr05 : 21086208 .. 21089304 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTTCAAGCTTATTAATGCTCTCAAAAATGGGATTCCCCACGAGGACTTCCCTTGTTTTGAAGCTGTTTTTCTTTGCTTTGCTTCTCATTGCCTCTACTGTTTCTGCAACCAACAACATTCCTTTGCTCCACAAACCTCGTATTCGTAAGTTGTCTTTAATTATTGTATGATTTTTCCACACAATATAGCCTCTTGTGATTGCTAAACCGAATCGAATTGTGAACACCTGATAAAAATCTTATCAAATGATGAATATATAATGTAGCTCTAATTCATGATAAATCTATTTTACACAAACAAGACATGAACCACTCAGTATAGTTCTCTTTTGAAAAGAAATGGCAAGTTTATTTGGTAAGAATATAGTTTTATTTCGAATTTTATTAAATAACTGATTGACCTAAAAACTTAAGTACTGATGAGTGAAGGTAAATTTAATATTATATCGTGTAACAAATTTTATGTAAGATTTCAGGTAAAATGGTTGTGGAGTACAAAAATGTTGGGAAGGGTGTGGTTGTACCAAAAGTAAAGAAACCAACTTCTGATGATGTCCCATGGGGGGAGGCTATATTCCTCCCATTTTAACCAACCCATGATATGTGAGATTTAAAATTGCTTGGATGATCAGCTGTGTTTTTCTTGTGTTAGTGTTGTCTTTTTTGGAAGCTTCAATCTCTAAGTTTTTAATCTCTTACATTGAGCTTAACTCAACGGTAATTGATATGATTTTCTTCTCTAAAGATCGAAGGTTTGATCTCCCACCTGGTAGTCGTTGTACTAAAAAAAAAATCCTATAATAAACTAAAGTAATTGATATATTTCTATCTTATATATTACTTTGTTTTCTCAATGCATTATTCAATCTCTTCCTTTCATGATGTGTTACAAAAAGTTTTAATTATATCCATATTGTACACTCTCTCTCATTTGTGGGCTGAGAATTTCTAGAAGGTTTAACAAAAGGAAACCAATATCAATTGAGAAGGAAATGATACTTATAGGAATTTGAATATAAGAGCTCCTAATTTCAATATCAATAATCAACTAAAAAATTTAAGCTGATATGTGATGCAAAAAATTTAATTATATTAATACTGCAACGTAGATTTGGCCAAATTCATTTCCATTAGTTTTATATTTTGAGATAAATAGTGAGTGGGTGACCCTATAAAACGGCCTAACAAAAAAGAAAAGGGCTCCTTCCATGAATACTAAAATAAAAAAAAAAAATATAGCAAATATAGCTAAACTTAAAGCTGTATGCAAATATAGCAAAATCAGTTTTTAAAATCCCTAAACTTACTACACGATTAAATCAACTAGACACATGCTACACGATTTAAAAAATACAACGCAGGACTTCATTAACACTCACATAAGTAGTAATATAAATATATCAATGATAACCAATAATAGTAGTCTATTATTAGCTATCGCTAATAGACCTCATATATTAAGGTACCACAGATATGTTAGGTTAGAGCCTATAGAAGTATATCATAATGATAGAAGTTTATCATGATGGACTTCGTCTATTATTAAAAGACTTCTATCAGTGATAATAACATACGACTTAAAGCATTATTAGTGATATGCTATCATTGAAAGACTTGCACCAGGGATTATAGCATATCACTTAAAACATATTAGTGATATGCTTCAATCACTAGATTTATCACTGATATCAATTATATGCTTTTATCACAAACAAAATCTATTAATGATAGAGATCTATTACTGGAATGTTATCAGTGATATGCTTGTATCACTGATAGAAACCTATCACTGATGCTATAATATTATAACCTATCAGTGGTAGACTTTAATATCAGTGATAAATTATGATATTCCATGCTTCTAACACTGATCTTGTTCAGATAAGATGCAAGGATTGAAGTTTCATGATAATCAGGTGCTTAGAAAGTATGCTTGGTCTATGACAATCAGGTGTTTTTCTAATAATCTTGTTGATCTTGTTAGATGGATAGTGTGTTCGAGGTAAATTGATGTCTTCTTTATCAACAAAATTTAAGAATAGTTTATCACTGATAAACTTTTATTATTGATAAAATTATATCTGTACTGAAATTAAAAAACCTTACAATGTTTATGAGATATGTAATTAATTTAGAGATAAAACACATGTTATCTAATAAACGCATCTCAATCTCATACAGAGAGATCAAAATAAAATAAAAACAAAAAACTTGAGTAGCGTGGGGCCAGCTCAGGACAGCCATGAAAACCCATGACAAATTGTCAATTGAAATGACCACTTGTTTGACTCTTGAAGTTCACAATTGTGTTGGGCCCATTTTTTTTTTTTTTTTTACCATCAATGGAGTTGCAGTTTAATTTTGCCTATAAATACAAGTAAAAATAAAATTAGCTCTTCATCTACCTCCATCCATCCTTATTAGTACTCTCAAATATGGCTTCCCCTAGGAGGATTTCCCTTGTCTTCAAGCTTCTTTCCTTTGCTTTGCTCCTCATTTTCTCTGTTGTTTCCACAACCAACAACATCGAGCCTTCGCTCCACAAGTCTCGTATTCGTAAGTTGTCTCATTATTGTTTGATATATACTAGCTGTTAAGAGTATGTTTGGAATGGCTTTTGAAATAATGTTTTTAGATTTTGCAGTTCTTTTTTTCTTGAACACTTTCGAATGAAAATTGATTGAATTCAATAGTAAATATTCCTGAATTAAATCTTATAATAAAATGATGAAATACATATAATGTAGCCCTAATTTAGGAAACTTTATTTTAGAATATGGTTTGATTTTGAATTTTTTTGTGTAAGGTTTCAGGTAAAATGGGTGTGGAGTACTACAAAAATGTTGTGGAGGATAATGTTGTTGTACCAAAAGTAATGAAACCAAGTTCAGAGGATTTCCCATGGGGGGGAGGTTATATTCATCATCCACACTTAAGCAACCCATGATGACATTTATAACTATGTTTGGATATATATGATCAGTTGTCTTTTTCTTTGGTTGGTGTTGGTTGACTTTTTGGAACCATCAATCTCATGTTCTTAACCCTAAACCCTATAAATTAAATTAAACTAATTGTTATTTCTCTCTTATATATT

mRNA sequence

CCTTCAAGCTTATTAATGCTCTCAAAAATGGGATTCCCCACGAGGACTTCCCTTGTTTTGAAGCTGTTTTTCTTTGCTTTGCTTCTCATTGCCTCTACTGTTTCTGCAACCAACAACATTCCTTTGCTCCACAAACCTCGTATTCTACTCTCAAATATGGCTTCCCCTAGGAGGATTTCCCTTGTCTTCAAGCTTCTTTCCTTTGCTTTGCTCCTCATTTTCTCTGTTGTTTCCACAACCAACAACATCGAGCCTTCGCTCCACAAGTCTCGTATTCGTAAAATGGGTGTGGAGTACTACAAAAATGTTGTGGAGGATAATGTTGTTGTACCAAAAGTAATGAAACCAAGTTCAGAGGATTTCCCATGGGGGGGAGGTTATATTCATCATCCACACTTAAGCAACCCATGATGACATTTATAACTATGTTTGGATATATATGATCAGTTGTCTTTTTCTTTGGTTGGTGTTGGTTGACTTTTTGGAACCATCAATCTCATGTTCTTAACCCTAAACCCTATAAATTAAATTAAACTAATTGTTATTTCTCTCTTATATATT

Coding sequence (CDS)

ATGCTCTCAAAAATGGGATTCCCCACGAGGACTTCCCTTGTTTTGAAGCTGTTTTTCTTTGCTTTGCTTCTCATTGCCTCTACTGTTTCTGCAACCAACAACATTCCTTTGCTCCACAAACCTCGTATTCTACTCTCAAATATGGCTTCCCCTAGGAGGATTTCCCTTGTCTTCAAGCTTCTTTCCTTTGCTTTGCTCCTCATTTTCTCTGTTGTTTCCACAACCAACAACATCGAGCCTTCGCTCCACAAGTCTCGTATTCGTAAAATGGGTGTGGAGTACTACAAAAATGTTGTGGAGGATAATGTTGTTGTACCAAAAGTAATGAAACCAAGTTCAGAGGATTTCCCATGGGGGGGAGGTTATATTCATCATCCACACTTAAGCAACCCATGA

Protein sequence

MLSKMGFPTRTSLVLKLFFFALLLIASTVSATNNIPLLHKPRILLSNMASPRRISLVFKLLSFALLLIFSVVSTTNNIEPSLHKSRIRKMGVEYYKNVVEDNVVVPKVMKPSSEDFPWGGGYIHHPHLSNP
Homology
[Close]
BLAST of Lsi05G013310 vs. TrEMBL
Match: A0A0A0L653_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G175590 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.4e-19
Identity = 57/85 (67.06%), Postives = 67/85 (78.82%), Query Frame = 1 

Query: 48  MASPRRISLVFKLLSFALLLIFSVVSTTNNI-EPSLHKSRIRKMGVEYYKNVVEDNVVVP 107
           MASP RI L+ KLL F+LLLIFS VSTTNN+ +P  HK RIRK+GV+   N  +  VV P
Sbjct: 1   MASPWRIPLLLKLLFFSLLLIFSTVSTTNNVVQPLFHKPRIRKIGVDKKTNDGKAGVV-P 60

Query: 108 KVMKPSSEDFPWGGGYIHHPHLSNP 132
           +V+KP+SEDFPWGGGYI HPHLSNP
Sbjct: 61  RVIKPTSEDFPWGGGYI-HPHLSNP 83

[Close]
BLAST of Lsi05G013310 vs. TrEMBL
Match: A0A0A0L8B2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G175600 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 9.0e-14
Identity = 48/84 (57.14%), Postives = 57/84 (67.86%), Query Frame = 1 

Query: 49  ASPRRISLVFKLLSFALLLI--FSVVSTTNNIEPSLHKSRIRKMGVEYYKNVVEDNVVVP 108
           +SP +ISL+ KLL FA LL   ++ +S TNNI P LHK  IRKM V Y K   E  VVVP
Sbjct: 3   SSPMKISLMLKLLFFATLLFIAYTTISATNNI-PLLHKPPIRKMAVGYRKG--EKAVVVP 62

Query: 109 KVMKPSSEDFPWGGGYIHHPHLSN 131
           KV KP+S DFPWGGGY+  P + N
Sbjct: 63  KVYKPTSADFPWGGGYVRRPPILN 83

[Close]
BLAST of Lsi05G013310 vs. NCBI nr
Match: gi|700202125|gb|KGN57258.1| (hypothetical protein Csa_3G175590 [Cucumis sativus])

HSP 1 Score: 104.0 bits (258), Expect = 2.0e-19
Identity = 57/85 (67.06%), Postives = 67/85 (78.82%), Query Frame = 1 

Query: 48  MASPRRISLVFKLLSFALLLIFSVVSTTNNI-EPSLHKSRIRKMGVEYYKNVVEDNVVVP 107
           MASP RI L+ KLL F+LLLIFS VSTTNN+ +P  HK RIRK+GV+   N  +  VV P
Sbjct: 1   MASPWRIPLLLKLLFFSLLLIFSTVSTTNNVVQPLFHKPRIRKIGVDKKTNDGKAGVV-P 60

Query: 108 KVMKPSSEDFPWGGGYIHHPHLSNP 132
           +V+KP+SEDFPWGGGYI HPHLSNP
Sbjct: 61  RVIKPTSEDFPWGGGYI-HPHLSNP 83

[Close]
BLAST of Lsi05G013310 vs. NCBI nr
Match: gi|700202126|gb|KGN57259.1| (hypothetical protein Csa_3G175600 [Cucumis sativus])

HSP 1 Score: 84.7 bits (208), Expect = 1.3e-13
Identity = 48/84 (57.14%), Postives = 57/84 (67.86%), Query Frame = 1 

Query: 49  ASPRRISLVFKLLSFALLLI--FSVVSTTNNIEPSLHKSRIRKMGVEYYKNVVEDNVVVP 108
           +SP +ISL+ KLL FA LL   ++ +S TNNI P LHK  IRKM V Y K   E  VVVP
Sbjct: 3   SSPMKISLMLKLLFFATLLFIAYTTISATNNI-PLLHKPPIRKMAVGYRKG--EKAVVVP 62

Query: 109 KVMKPSSEDFPWGGGYIHHPHLSN 131
           KV KP+S DFPWGGGY+  P + N
Sbjct: 63  KVYKPTSADFPWGGGYVRRPPILN 83

The following BLAST results are available for this feature:
BLAST of Lsi05G013310 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi05G013310 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L653_CUCSA1.4e-1967.06Uncharacterized protein OS=Cucumis sativus GN=Csa_3G175590 PE=4 SV=1[more]
A0A0A0L8B2_CUCSA9.0e-1457.14Uncharacterized protein OS=Cucumis sativus GN=Csa_3G175600 PE=4 SV=1[more]
BLAST of Lsi05G013310 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi05G013310 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202125|gb|KGN57258.1|2.0e-1967.06hypothetical protein Csa_3G175590 [Cucumis sativus][more]
gi|700202126|gb|KGN57259.1|1.3e-1357.14hypothetical protein Csa_3G175600 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G013310.1Lsi05G013310.1mRNA