CsaV3_3G016060 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_3G016060
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr3 : 11999391 .. 12000263 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATACAAGTAAACAAAAATTAGCTCTTCACCTAGCTAACTCCATCATCTATGCTTATTAAATGCCCCAAAAAATGGCTTCCCCTTGGAGAATTCCCCTTTTGTTGAAGCTTCTTTTCTTTTCTTTGCTTCTCATTTTCTCTACTGTTTCTACAACCAACAACGTCGTCCAGCCCCTGTTCCACAAACCTCGCATTCGTAAGTCATCATTCTCGTTATTATCTAACATGCCTATTCTTTTTCAATATGTTTTAAAAACGTATTTGAAACGATTTTGAAAATAGTATGTTTTTAGTCGTGGTTTGTTCTTATTTTGAATACTCTCTCATTGTTAATTTTTTTCACCTATTAAATTGACCAAGTCAATCCGGATCCAACAGTAAACCCTCGTGAATTAAATCTTATCAAAATGGATATATAACATAGACCCTAATTTAGGAAGCTTATTTTTAAAGAAAGCATATGCTATGCAAGACATTATATATGAACCATTTTACTTGATCTCCCCCTACAAAGAAAATGACAACCCATAAGTTAAATTGGTAAAAGTATATATGGTTTCATTTTGAGTTCTATATGTAAATGGTTTCAGGTAAGATTGGTGTGGATAAGAAAACTAATGATGGGAAGGCTGGTGTTGTACCAAGAGTAATAAAACCAACTTCTGAAGATTTCCCATGGGGAGGAGGTTATATTCATCCACACTTAAGCAACCCATGATCACATTAATTTTAAACTATGTTTGGTTTAAATCAAGCTCTGTAATTTGTTTTTATTTGGTTGGTGGTGTTGACTTTTTTTGAAGCATCAATCTCATCTTCTTAACCCTACTCTATATATATATATATATATTAATTGTTTTTTCTCTCTCATCCA

mRNA sequence

ATGCCCCAAAAAATGGCTTCCCCTTGGAGAATTCCCCTTTTGTTGAAGCTTCTTTTCTTTTCTTTGCTTCTCATTTTCTCTACTGTTTCTACAACCAACAACGTCGTCCAGCCCCTGTTCCACAAACCTCGCATTCGTAAGATTGGTGTGGATAAGAAAACTAATGATGGGAAGGCTGGTGTTGTACCAAGAGTAATAAAACCAACTTCTGAAGATTTCCCATGGGGAGGAGGTTATATTCATCCACACTTAAGCAACCCATGA

Coding sequence (CDS)

ATGCCCCAAAAAATGGCTTCCCCTTGGAGAATTCCCCTTTTGTTGAAGCTTCTTTTCTTTTCTTTGCTTCTCATTTTCTCTACTGTTTCTACAACCAACAACGTCGTCCAGCCCCTGTTCCACAAACCTCGCATTCGTAAGATTGGTGTGGATAAGAAAACTAATGATGGGAAGGCTGGTGTTGTACCAAGAGTAATAAAACCAACTTCTGAAGATTTCCCATGGGGAGGAGGTTATATTCATCCACACTTAAGCAACCCATGA

Protein sequence

MPQKMASPWRIPLLLKLLFFSLLLIFSTVSTTNNVVQPLFHKPRIRKIGVDKKTNDGKAGVVPRVIKPTSEDFPWGGGYIHPHLSNP

Homology

[Close]

BLAST of CsaV3_3G016060 vs. NCBI nr
Match: KGN57258.1 (hypothetical protein Csa_3G175590 [Cucumis sativus])

HSP 1 Score: 174.1 bits (440), Expect = 2.1e-40
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 5  MASPWRIPLLLKLLFFSLLLIFSTVSTTNNVVQPLFHKPRIRKIGVDKKTNDGKAGVVPR 64
          MASPWRIPLLLKLLFFSLLLIFSTVSTTNNVVQPLFHKPRIRKIGVDKKTNDGKAGVVPR
Sbjct: 1  MASPWRIPLLLKLLFFSLLLIFSTVSTTNNVVQPLFHKPRIRKIGVDKKTNDGKAGVVPR 60

Query: 65 VIKPTSEDFPWGGGYIHPHLSNP 88
          VIKPTSEDFPWGGGYIHPHLSNP
Sbjct: 61 VIKPTSEDFPWGGGYIHPHLSNP 83

[Close]

BLAST of CsaV3_3G016060 vs. NCBI nr
Match: KGN57259.1 (hypothetical protein Csa_3G175600 [Cucumis sativus])

HSP 1 Score: 87.8 bits (216), Expect = 2.0e-14
Identity = 48/86 (55.81%), Postives = 62/86 (72.09%), Query Frame = 0


Query: 6  ASPWRIPLLLKLLFFSLLLI--FSTVSTTNNVVQPLFHKPRIRKIGVDKKTNDGKAGVVP 65
          +SP +I L+LKLLFF+ LL   ++T+S TNN+  PL HKP IRK+ V  +  + KA VVP
Sbjct: 3  SSPMKISLMLKLLFFATLLFIAYTTISATNNI--PLLHKPPIRKMAVGYRKGE-KAVVVP 62

Query: 66 RVIKPTSEDFPWGGGYIH--PHLSNP 88
          +V KPTS DFPWGGGY+   P L+NP
Sbjct: 63 KVYKPTSADFPWGGGYVRRPPILNNP 85

[Close]

BLAST of CsaV3_3G016060 vs. NCBI nr
Match: XP_022141390.1 (uncharacterized protein LOC111011803 [Momordica charantia])

HSP 1 Score: 52.8 bits (125), Expect = 7.1e-04
Identity = 36/79 (45.57%), Postives = 46/79 (58.23%), Query Frame = 0


Query: 10  RIPLLLKLLFFSLLLIFSTVSTTNNVVQPLFHK-PRIRKIGVDKKTNDGKAGVVPRVIKP 69
           RI  +LKL FF+LLLI S VS +     P  HK PRIRK+G++ ++     G      K 
Sbjct: 46  RISFVLKLFFFALLLIASRVSAST----PSIHKRPRIRKLGMEYRS----VGKAVLRAKA 105

Query: 70  TSEDFPWGGGYIHPHLSNP 88
            S DFPW GGY +P  +NP
Sbjct: 106 ASYDFPWKGGY-NPPNNNP 115

[Close]

BLAST of CsaV3_3G016060 vs. TrEMBL
Match: tr|A0A0A0L653|A0A0A0L653_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175590 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.4e-40
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 5  MASPWRIPLLLKLLFFSLLLIFSTVSTTNNVVQPLFHKPRIRKIGVDKKTNDGKAGVVPR 64
          MASPWRIPLLLKLLFFSLLLIFSTVSTTNNVVQPLFHKPRIRKIGVDKKTNDGKAGVVPR
Sbjct: 1  MASPWRIPLLLKLLFFSLLLIFSTVSTTNNVVQPLFHKPRIRKIGVDKKTNDGKAGVVPR 60

Query: 65 VIKPTSEDFPWGGGYIHPHLSNP 88
          VIKPTSEDFPWGGGYIHPHLSNP
Sbjct: 61 VIKPTSEDFPWGGGYIHPHLSNP 83

[Close]

BLAST of CsaV3_3G016060 vs. TrEMBL
Match: tr|A0A0A0L8B2|A0A0A0L8B2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175600 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.3e-14
Identity = 48/86 (55.81%), Postives = 62/86 (72.09%), Query Frame = 0


Query: 6  ASPWRIPLLLKLLFFSLLLI--FSTVSTTNNVVQPLFHKPRIRKIGVDKKTNDGKAGVVP 65
          +SP +I L+LKLLFF+ LL   ++T+S TNN+  PL HKP IRK+ V  +  + KA VVP
Sbjct: 3  SSPMKISLMLKLLFFATLLFIAYTTISATNNI--PLLHKPPIRKMAVGYRKGE-KAVVVP 62

Query: 66 RVIKPTSEDFPWGGGYIH--PHLSNP 88
          +V KPTS DFPWGGGY+   P L+NP
Sbjct: 63 KVYKPTSADFPWGGGYVRRPPILNNP 85

The following BLAST results are available for this feature:

BLAST of CsaV3_3G016060 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57258.1	2.1e-40	100.00	hypothetical protein Csa_3G175590 [Cucumis sativus]	[more]
KGN57259.1	2.0e-14	55.81	hypothetical protein Csa_3G175600 [Cucumis sativus]	[more]
XP_022141390.1	7.1e-04	45.57	uncharacterized protein LOC111011803 [Momordica charantia]	[more]

BLAST of CsaV3_3G016060 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G016060 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G016060 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L653\|A0A0A0L653_CUCSA	1.4e-40	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175590 PE=4 SV=1	[more]
tr\|A0A0A0L8B2\|A0A0A0L8B2_CUCSA	1.3e-14	55.81	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175600 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G016060.1	CsaV3_3G016060.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_3G016060	CSPI03G15850	Wild cucumber (PI 183967)	cpicucB144
CsaV3_3G016060	CsGy3G015940	Cucumber (Gy14) v2	cgybcucB117
CsaV3_3G016060	Cla006277	Watermelon (97103) v1	cucwmB239
CsaV3_3G016060	ClCG05G007300	Watermelon (Charleston Gray)	cucwcgB225
CsaV3_3G016060	Lsi05G013310	Bottle gourd (USVL1VR-Ls)	cuclsiB229

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_3G016060	Wax gourd	cucwgoB272
CsaV3_3G016060	Silver-seed gourd	carcucB0404
CsaV3_3G016060	Silver-seed gourd	carcucB0909
CsaV3_3G016060	Cucumber (Gy14) v1	cgycucB387
CsaV3_3G016060	Cucurbita maxima (Rimu)	cmacucB0383
CsaV3_3G016060	Cucurbita maxima (Rimu)	cmacucB0838
CsaV3_3G016060	Cucurbita moschata (Rifu)	cmocucB0379
CsaV3_3G016060	Cucurbita moschata (Rifu)	cmocucB0823
CsaV3_3G016060	Cucurbita pepo (Zucchini)	cpecucB0257
CsaV3_3G016060	Cucurbita pepo (Zucchini)	cpecucB0492
CsaV3_3G016060	Bottle gourd (USVL1VR-Ls)	cuclsiB245
CsaV3_3G016060	Melon (DHL92) v3.5.1	cucmeB236
CsaV3_3G016060	Melon (DHL92) v3.6.1	cucmedB230
CsaV3_3G016060	Watermelon (97103) v2	cucwmbB206