Carg22715 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22715
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	ycf20-like protein
Location	Cucurbita_argyrosperma_scaffold_230 : 267202 .. 269152 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATGCAACACAAAGAATCGCTGTGTCAGTGATGTGTGTGCAACGAAACAGATTTTGTGACACAACTTCTACCTTCCAATGTATCAACAAATTTTTCCAGAGTGCGCAATGATGACTGTTAACCACCTCGTCCCTTTATCGTTTTTGCACGTCCCATTTCGTCCGCTATGGGTTTTCGTTCTCGGCGCTATCAATCTCCCAGCCCCCTCTTATTCAGTGTGTTTTCCGCAAGACTTTTTATTGTACATTTCTGCAGTCTTCGAAAAATGTGCAATTTGTATTTCTGCTCTGAATTTGTTGTGATTAATTGCTCACTGCGGCAGCGCAAACCTTGCATATAGAATACTCCTCCGAACAATACTTGAATGCTCACAGTTATGCGTCTACGTGAGTTTGGCGATATTTATTCTGCGCTTCCGCACCTTATTTACCTCATCGAAACGCACAACTTGATAATACTGAGCATGGATGCACACATATATTTCATGGCCACTGTTGATAATCCCTACGCTGTACAAGGGGTAGCCATTCTTCGAGAACATTCTGAAACTTATTGTACTATAATTAGTTTTGTATTAACAACTCGTTAGAGATCCTGCGTGCTCACTTGCATCGTATGGAGTTATGTGTTTAGTACAAAGCAAGGTCGATACTATCATGATTGCGACTATGATTTGTGTCAGTCTGAGTGTCAATCCTCTCAAGCGTTGTTTGCTTAGATAAACCACTGTCTTGCGCGAAGTTACTTTGGTGAGGTTATCGACGTCTCTCGCACGATCGTAGTAAATAGAGTGATATACAGAATTATTGTCTCTCCAAAGGAGTTTAATGCTCGGCCAGACATGACGGTATTTCACTCTTGCCTTATATGATGTGGTTACATTAGGTATTCATTCTCCTCGTGAGTTATTCAACTCTGTGCGTCTATTCCACTGATCGTGCATTATACTCAACTTCTCGCAATACATAGATCTACGAATGGGCTCTATTCTAATTGGTTCTACCTCTTTATCACGTTGTCGTTAATGAACCTATGCTATTCTTCTTGCAATATTTCATTTCTGTAGCTTGGAGAACTAGTAGGTCCACAAATCATGTCTTCTAACTAGTATTTGGCATGAAAACTAAAGTTTGTTGAGGCACAGAAGTTAAGGCTCGGAGAGCGAATAGTAGTAGCACTTCTAGAACAGAGGTGTATCGCAACTCAATTTTGAGGGATTTGGGTGAGGTGCTACTTATTTTATACATCCTGCATCTTGTGATAGCGTCCTTCGTTTTAATTTACTACCACTACCTCTCGCGACTTAGACCATTGAAAATTGCTCTGCCTCGTCACTTACGTAATAGGGTCGTTTCTGATAGTTTCTCTCACTAGATTCGTACTCTTCATTCTTTCATTTTTCTATATAAAAGTTTTTTTTTTTTTCTTATTTAAAAGAAGAAAAGTAAACTCCGTATCGTTGCTGTTATGAACATTTGGTTGTGATGTTACTTTTTACAGTTTCCGGACGAGTAGACATCTACAACAATTAGCCTTTGCATTAGACACAGGTGGGGTATCTAGTAACGGTGGGGGAGACAACCTTGATGATGGTAATGAGTCGAATCTGGGTCGTACTCGATTAGGCAGGCTAGTTAGCGCAGGTGCCAGACAGTTGCTGGAAAAACTAAACTCAGCTAGAAAGAACTTTCCTACAAAGATATTTTTGCTTCTTTTGGGTTTCTATACAGCCAATGCTCTTGCTACAATTCTTGGGCAGACGGGTGACTGGGATGTTTTGGTTGCTGGTGTGGTGGTTGCTGCCATTGAATGGATTGGTATACTCATGTACAAGAAGCCACCACCTCTATTAACTAGGAGGTTGAAATCATTAATAGTACTGATAAACTATTGGAAAGCCGGCGTATGCTTAGGCCTCTTCGTCGATGCGTTCAAATTGGGGAGTTGA

mRNA sequence

ATGTATGCAACACAAAGAATCGCTGTGTCAGTGATGTGTGTGCAACGAAACAGATTTTGTGACACAACTTCTACCTTCCAATCGCAAACCTTGCATATAGAATACTCCTCCGAACAATACTTGAATGCTCACAGTTATGCGTCTACTTTCCGGACGAGTAGACATCTACAACAATTAGCCTTTGCATTAGACACAGGTGGGGTATCTAGTAACGGTGGGGGAGACAACCTTGATGATGGTAATGAGTCGAATCTGGGTCGTACTCGATTAGGCAGGCTAGTTAGCGCAGCCAATGCTCTTGCTACAATTCTTGGGCAGACGGGTGACTGGGATGTTTTGGTTGCTGGTGTGGTGGTTGCTGCCATTGAATGGATTGGTATACTCATGTACAAGAAGCCACCACCTCTATTAACTAGGAGGTTGAAATCATTAATAGTACTGATAAACTATTGGAAAGCCGGCGTATGCTTAGGCCTCTTCGTCGATGCGTTCAAATTGGGGAGTTGA

Coding sequence (CDS)

ATGTATGCAACACAAAGAATCGCTGTGTCAGTGATGTGTGTGCAACGAAACAGATTTTGTGACACAACTTCTACCTTCCAATCGCAAACCTTGCATATAGAATACTCCTCCGAACAATACTTGAATGCTCACAGTTATGCGTCTACTTTCCGGACGAGTAGACATCTACAACAATTAGCCTTTGCATTAGACACAGGTGGGGTATCTAGTAACGGTGGGGGAGACAACCTTGATGATGGTAATGAGTCGAATCTGGGTCGTACTCGATTAGGCAGGCTAGTTAGCGCAGCCAATGCTCTTGCTACAATTCTTGGGCAGACGGGTGACTGGGATGTTTTGGTTGCTGGTGTGGTGGTTGCTGCCATTGAATGGATTGGTATACTCATGTACAAGAAGCCACCACCTCTATTAACTAGGAGGTTGAAATCATTAATAGTACTGATAAACTATTGGAAAGCCGGCGTATGCTTAGGCCTCTTCGTCGATGCGTTCAAATTGGGGAGTTGA

Protein sequence

MYATQRIAVSVMCVQRNRFCDTTSTFQSQTLHIEYSSEQYLNAHSYASTFRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS

Homology

[Close]

BLAST of Carg22715 vs. NCBI nr
Match: XP_022924878.1 (ycf20-like protein [Cucurbita moschata] >XP_022924885.1 ycf20-like protein [Cucurbita moschata] >XP_022924895.1 ycf20-like protein [Cucurbita moschata] >XP_022924902.1 ycf20-like protein [Cucurbita moschata] >XP_022924910.1 ycf20-like protein [Cucurbita moschata] >XP_022924918.1 ycf20-like protein [Cucurbita moschata])

HSP 1 Score: 218.4 bits (555), Expect = 1.9e-53
Identity = 119/149 (79.87%), Postives = 120/149 (80.54%), Query Frame = 0


Query: 49  TFRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSA------------ 108
           +FRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSA            
Sbjct: 57  SFRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSA 116

Query: 109 -----------------ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTR 168
                            ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTR
Sbjct: 117 RKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTR 176

[Close]

BLAST of Carg22715 vs. NCBI nr
Match: XP_022973215.1 (ycf20-like protein [Cucurbita maxima] >XP_022973224.1 ycf20-like protein [Cucurbita maxima] >XP_022973228.1 ycf20-like protein [Cucurbita maxima] >XP_022973233.1 ycf20-like protein [Cucurbita maxima] >XP_022973241.1 ycf20-like protein [Cucurbita maxima] >XP_022973250.1 ycf20-like protein [Cucurbita maxima])

HSP 1 Score: 218.4 bits (555), Expect = 1.9e-53
Identity = 119/149 (79.87%), Postives = 120/149 (80.54%), Query Frame = 0


Query: 49  TFRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSA------------ 108
           +FRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSA            
Sbjct: 57  SFRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSA 116

Query: 109 -----------------ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTR 168
                            ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTR
Sbjct: 117 RKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTR 176

[Close]

BLAST of Carg22715 vs. NCBI nr
Match: XP_023520636.1 (ycf20-like protein [Cucurbita pepo subsp. pepo] >XP_023520637.1 ycf20-like protein [Cucurbita pepo subsp. pepo] >XP_023520638.1 ycf20-like protein [Cucurbita pepo subsp. pepo] >XP_023520639.1 ycf20-like protein [Cucurbita pepo subsp. pepo] >XP_023520640.1 ycf20-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 218.4 bits (555), Expect = 1.9e-53
Identity = 119/149 (79.87%), Postives = 120/149 (80.54%), Query Frame = 0


Query: 49  TFRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSA------------ 108
           +FRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSA            
Sbjct: 57  SFRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSA 116

Query: 109 -----------------ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTR 168
                            ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTR
Sbjct: 117 RKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTR 176

[Close]

BLAST of Carg22715 vs. NCBI nr
Match: XP_008444023.1 (PREDICTED: ycf20-like protein [Cucumis melo])

HSP 1 Score: 201.1 bits (510), Expect = 3.1e-48
Identity = 106/148 (71.62%), Postives = 117/148 (79.05%), Query Frame = 0


Query: 50  FRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSA------------- 109
           F+TSRH+ ++AFALDTGGVSS+GGGDN+DDG+ESNLGRTRLGRLVS+             
Sbjct: 70  FQTSRHVNKIAFALDTGGVSSSGGGDNVDDGDESNLGRTRLGRLVSSGARQLLEKLNSAR 129

Query: 110 ----------------ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRR 169
                           ANALATILGQTGDWDVLVAGVVVAAIEWIGILMY+KPPPLLTRR
Sbjct: 130 KNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTRR 189

[Close]

BLAST of Carg22715 vs. NCBI nr
Match: XP_004139097.1 (PREDICTED: ycf20-like protein [Cucumis sativus] >XP_011660206.1 PREDICTED: ycf20-like protein [Cucumis sativus] >XP_011660207.1 PREDICTED: ycf20-like protein [Cucumis sativus] >KGN66645.1 hypothetical protein Csa_1G652280 [Cucumis sativus])

HSP 1 Score: 200.3 bits (508), Expect = 5.2e-48
Identity = 106/149 (71.14%), Postives = 117/149 (78.52%), Query Frame = 0


Query: 49  TFRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSA------------ 108
           + +TSRH+ +LAFALDTGGVSS+GGGDN+DDG+ESNLGRTRLGRLVS+            
Sbjct: 64  SLQTSRHVNKLAFALDTGGVSSSGGGDNIDDGDESNLGRTRLGRLVSSGARQLLEKLNSA 123

Query: 109 -----------------ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTR 168
                            ANALATILGQTGDWDVLVAGVVVAAIEWIGILMY+KPPPLLTR
Sbjct: 124 RKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTR 183

[Close]

BLAST of Carg22715 vs. TAIR10
Match: AT1G65420.1 (Protein of unknown function (DUF565))

HSP 1 Score: 124.8 bits (312), Expect = 5.1e-29
Identity = 75/151 (49.67%), Postives = 95/151 (62.91%), Query Frame = 0


Query: 49  TFRTSRHLQQLAFALDTGGVSSNGGGDNLD-DGNESNLGRTRLGRLVSA----------- 108
           +F+  R  +++AFALDTG       G+  + +G+ + LG TRLGR+  A           
Sbjct: 47  SFQIRRPNRKIAFALDTGSSIPGDSGEGQEMNGDRTGLGSTRLGRIAIAGGKQLLGKINS 106

Query: 109 ------------------ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKP-PPLL 168
                             ANALATILGQTGDWDVLVAG+VVAAIE IG+LMYKKP   + 
Sbjct: 107 ARKNFPMKIFLLLLGFYTANALATILGQTGDWDVLVAGIVVAAIEGIGMLMYKKPSSSMF 166

[Close]

BLAST of Carg22715 vs. TAIR10
Match: AT3G56830.1 (Protein of unknown function (DUF565))

HSP 1 Score: 79.7 bits (195), Expect = 1.9e-15
Identity = 37/70 (52.86%), Postives = 51/70 (72.86%), Query Frame = 0


Query: 96  AANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGV 155
           +A A +T +GQTGDWDVL AG+ V  +E IG LMY+   PL+  +++S I + NYWK G+
Sbjct: 119 SATAFSTFIGQTGDWDVLSAGLAVLVVECIGALMYRASIPLI-NKMRSTITMFNYWKTGL 178

Query: 156 CLGLFVDAFK 166
            LGLF+D+FK
Sbjct: 179 ALGLFLDSFK 187

[Close]

BLAST of Carg22715 vs. Swiss-Prot
Match: sp|O80813|YC20L_ARATH (Ycf20-like protein OS=Arabidopsis thaliana OX=3702 GN=At1g65420 PE=2 SV=2)

HSP 1 Score: 124.8 bits (312), Expect = 9.1e-28
Identity = 75/151 (49.67%), Postives = 95/151 (62.91%), Query Frame = 0


Query: 49  TFRTSRHLQQLAFALDTGGVSSNGGGDNLD-DGNESNLGRTRLGRLVSA----------- 108
           +F+  R  +++AFALDTG       G+  + +G+ + LG TRLGR+  A           
Sbjct: 47  SFQIRRPNRKIAFALDTGSSIPGDSGEGQEMNGDRTGLGSTRLGRIAIAGGKQLLGKINS 106

Query: 109 ------------------ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKP-PPLL 168
                             ANALATILGQTGDWDVLVAG+VVAAIE IG+LMYKKP   + 
Sbjct: 107 ARKNFPMKIFLLLLGFYTANALATILGQTGDWDVLVAGIVVAAIEGIGMLMYKKPSSSMF 166

[Close]

BLAST of Carg22715 vs. Swiss-Prot
Match: sp|Q9MUL5|YCF20_MESVI (Uncharacterized protein ycf20 OS=Mesostigma viride OX=41882 GN=ycf20 PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.6e-11
Identity = 43/76 (56.58%), Postives = 49/76 (64.47%), Query Frame = 0


Query: 97  ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKK----PPPLLTRRLKSLIVLINYWK 156
           A  LAT+ GQTGDWDVLVAG++VA IE +G  MY K       +      SLI  INY K
Sbjct: 42  ATVLATVFGQTGDWDVLVAGILVAMIEILGNKMYSKKYISKKQVFDISFLSLIG-INYIK 101

Query: 157 AGVCLGLFVDAFKLGS 169
            G+  GLFVDAFKLGS
Sbjct: 102 IGLIFGLFVDAFKLGS 116

[Close]

BLAST of Carg22715 vs. Swiss-Prot
Match: sp|P51214|YCF20_PORPU (Uncharacterized protein ycf20 OS=Porphyra purpurea OX=2787 GN=ycf20 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.6e-08
Identity = 33/72 (45.83%), Postives = 44/72 (61.11%), Query Frame = 0


Query: 97  ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGVC 156
           +  L+TI GQTGDW ++ A ++VAAIE +  ++Y        R     I L+N  K G+ 
Sbjct: 42  STGLSTIPGQTGDWGIIAASLIVAAIELVSKIVYSNKKKYGVR-----INLLNNLKIGIT 101

Query: 157 LGLFVDAFKLGS 169
            GLFVDAFKLGS
Sbjct: 102 YGLFVDAFKLGS 108

[Close]

BLAST of Carg22715 vs. Swiss-Prot
Match: sp|Q1XDS2|YCF20_PYRYE (Uncharacterized protein ycf20 OS=Pyropia yezoensis OX=2788 GN=ycf20 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 8.0e-08
Identity = 32/72 (44.44%), Postives = 44/72 (61.11%), Query Frame = 0


Query: 97  ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGVC 156
           +  L+TI GQTGDW ++ A ++VAA E    ++Y        ++L   I L N +K G+ 
Sbjct: 42  STGLSTIPGQTGDWGIIAASLIVAATELTSKIVYSS-----HKQLNIKINLFNNFKIGIT 101

Query: 157 LGLFVDAFKLGS 169
            GLFVDAFKLGS
Sbjct: 102 YGLFVDAFKLGS 108

[Close]

BLAST of Carg22715 vs. Swiss-Prot
Match: sp|P48409|YCF20_GALSU (Uncharacterized protein ycf20 OS=Galdieria sulphuraria OX=130081 GN=ycf20 PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 9.8e-06
Identity = 27/75 (36.00%), Postives = 44/75 (58.67%), Query Frame = 0


Query: 94  VSAANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKA 153
           + ++N L TI  QTGDW + +   ++A  E I  + Y +    + +  K++I   N +K 
Sbjct: 12  IFSSNLLCTIYTQTGDWSLYLTSCIIALYEIISYISYNQ---FIKKTHKNIINCFNGFKI 71

Query: 154 GVCLGLFVDAFKLGS 169
           G+  GL++DAFKLGS
Sbjct: 72  GLIYGLYLDAFKLGS 83

[Close]

BLAST of Carg22715 vs. TrEMBL
Match: tr|A0A1S3B8Z3|A0A1S3B8Z3_CUCME (ycf20-like protein OS=Cucumis melo OX=3656 GN=LOC103487471 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 2.0e-48
Identity = 106/148 (71.62%), Postives = 117/148 (79.05%), Query Frame = 0


Query: 50  FRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSA------------- 109
           F+TSRH+ ++AFALDTGGVSS+GGGDN+DDG+ESNLGRTRLGRLVS+             
Sbjct: 70  FQTSRHVNKIAFALDTGGVSSSGGGDNVDDGDESNLGRTRLGRLVSSGARQLLEKLNSAR 129

Query: 110 ----------------ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRR 169
                           ANALATILGQTGDWDVLVAGVVVAAIEWIGILMY+KPPPLLTRR
Sbjct: 130 KNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTRR 189

[Close]

BLAST of Carg22715 vs. TrEMBL
Match: tr|A0A0A0LXR2|A0A0A0LXR2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G652280 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 3.5e-48
Identity = 106/149 (71.14%), Postives = 117/149 (78.52%), Query Frame = 0


Query: 49  TFRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSA------------ 108
           + +TSRH+ +LAFALDTGGVSS+GGGDN+DDG+ESNLGRTRLGRLVS+            
Sbjct: 64  SLQTSRHVNKLAFALDTGGVSSSGGGDNIDDGDESNLGRTRLGRLVSSGARQLLEKLNSA 123

Query: 109 -----------------ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTR 168
                            ANALATILGQTGDWDVLVAGVVVAAIEWIGILMY+KPPPLLTR
Sbjct: 124 RKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTR 183

[Close]

BLAST of Carg22715 vs. TrEMBL
Match: tr|M5WCV3|M5WCV3_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G364400 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 2.6e-35
Identity = 94/173 (54.34%), Postives = 113/173 (65.32%), Query Frame = 0


Query: 25  TFQSQTLHIEYSSEQYLNAHSYASTFRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESN 84
           +F  QT  I   S  +L       +F ++RH  ++AFALDTGGV  NGG + + DGN S+
Sbjct: 39  SFIRQTSKIGIKSVPFLQ-----RSFHSTRHQWRIAFALDTGGVPDNGGQEGI-DGNSSD 98

Query: 85  LGRTRLGRLVSA-----------------------------ANALATILGQTGDWDVLVA 144
           L RTRLGR+V+A                             ANALATILGQTGDWDVLVA
Sbjct: 99  LNRTRLGRIVTAGGRQLLEKLNIARKNFPMKIFLLLLGFYTANALATILGQTGDWDVLVA 158

Query: 145 GVVVAAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS 169
           G+VVAAIE IG+LMY+KPP   + RLKSL+++INYWKAGVCLGLFVDAFKLGS
Sbjct: 159 GIVVAAIEGIGMLMYRKPPSQSSGRLKSLVMMINYWKAGVCLGLFVDAFKLGS 205

[Close]

BLAST of Carg22715 vs. TrEMBL
Match: tr|A0A2N9HB14|A0A2N9HB14_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS36835 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 3.4e-35
Identity = 91/148 (61.49%), Postives = 104/148 (70.27%), Query Frame = 0


Query: 50  FRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSA------------- 109
           F+T RH  ++AFALDTGG+ SNGG ++L +GN  +LGRTRLGR+VSA             
Sbjct: 34  FQTKRHGWKIAFALDTGGIPSNGGQESL-NGNGPDLGRTRLGRIVSAGGRQLLEKLNSAR 93

Query: 110 ----------------ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRR 169
                           ANALATILGQTGDWDVLVAGVVVAAIE IG+LMY+KP  L T R
Sbjct: 94  KNFPMKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEGIGMLMYRKPSSLSTGR 153

[Close]

BLAST of Carg22715 vs. TrEMBL
Match: tr|A0A2N9FIG5|A0A2N9FIG5_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS18488 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 4.4e-35
Identity = 91/148 (61.49%), Postives = 104/148 (70.27%), Query Frame = 0


Query: 50  FRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSA------------- 109
           F+T RH  ++AFALDTGG+ SNGG ++L +GN  +LGRTRLGR+VSA             
Sbjct: 34  FQTRRHGWKIAFALDTGGIPSNGGQESL-NGNGPDLGRTRLGRIVSAGGRQLLEKLNSAR 93

Query: 110 ----------------ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRR 169
                           ANALATILGQTGDWDVLVAGVVVAAIE IG+LMY+KP  L T R
Sbjct: 94  KNFPMKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEGIGMLMYRKPSSLSTGR 153

The following BLAST results are available for this feature:

BLAST of Carg22715 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022924878.1	1.9e-53	79.87	ycf20-like protein [Cucurbita moschata] >XP_022924885.1 ycf20-like protein [Cucu...	[more]
XP_022973215.1	1.9e-53	79.87	ycf20-like protein [Cucurbita maxima] >XP_022973224.1 ycf20-like protein [Cucurb...	[more]
XP_023520636.1	1.9e-53	79.87	ycf20-like protein [Cucurbita pepo subsp. pepo] >XP_023520637.1 ycf20-like prote...	[more]
XP_008444023.1	3.1e-48	71.62	PREDICTED: ycf20-like protein [Cucumis melo]	[more]
XP_004139097.1	5.2e-48	71.14	PREDICTED: ycf20-like protein [Cucumis sativus] >XP_011660206.1 PREDICTED: ycf20...	[more]

BLAST of Carg22715 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G65420.1	5.1e-29	49.67	Protein of unknown function (DUF565)	[more]
AT3G56830.1	1.9e-15	52.86	Protein of unknown function (DUF565)	[more]

BLAST of Carg22715 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O80813\|YC20L_ARATH	9.1e-28	49.67	Ycf20-like protein OS=Arabidopsis thaliana OX=3702 GN=At1g65420 PE=2 SV=2	[more]
sp\|Q9MUL5\|YCF20_MESVI	1.6e-11	56.58	Uncharacterized protein ycf20 OS=Mesostigma viride OX=41882 GN=ycf20 PE=3 SV=1	[more]
sp\|P51214\|YCF20_PORPU	3.6e-08	45.83	Uncharacterized protein ycf20 OS=Porphyra purpurea OX=2787 GN=ycf20 PE=3 SV=1	[more]
sp\|Q1XDS2\|YCF20_PYRYE	8.0e-08	44.44	Uncharacterized protein ycf20 OS=Pyropia yezoensis OX=2788 GN=ycf20 PE=3 SV=1	[more]
sp\|P48409\|YCF20_GALSU	9.8e-06	36.00	Uncharacterized protein ycf20 OS=Galdieria sulphuraria OX=130081 GN=ycf20 PE=3 S...	[more]

BLAST of Carg22715 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B8Z3\|A0A1S3B8Z3_CUCME	2.0e-48	71.62	ycf20-like protein OS=Cucumis melo OX=3656 GN=LOC103487471 PE=4 SV=1	[more]
tr\|A0A0A0LXR2\|A0A0A0LXR2_CUCSA	3.5e-48	71.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G652280 PE=4 SV=1	[more]
tr\|M5WCV3\|M5WCV3_PRUPE	2.6e-35	54.34	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G364400 PE=4 SV=1	[more]
tr\|A0A2N9HB14\|A0A2N9HB14_FAGSY	3.4e-35	61.49	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS36835 PE=4 SV=1	[more]
tr\|A0A2N9FIG5\|A0A2N9FIG5_FAGSY	4.4e-35	61.49	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS18488 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007572	Uncharacterised_Ycf20

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22715-RA	Carg22715-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007572	Uncharacterised protein family Ycf20	PFAM	PF04483	DUF565	coord: 106..168 e-value: 1.7E-21 score: 76.4
IPR007572	Uncharacterised protein family Ycf20	PANTHER	PTHR33787	FAMILY NOT NAMED	coord: 96..168
IPR007572	Uncharacterised protein family Ycf20	PANTHER	PTHR33787	FAMILY NOT NAMED	coord: 12..97
None	No IPR available	PANTHER	PTHR33787:SF4	YCF20-LIKE PROTEIN	coord: 96..168
None	No IPR available	PANTHER	PTHR33787:SF4	YCF20-LIKE PROTEIN	coord: 12..97

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg22715	Cla009511	Watermelon (97103) v1	carwmB0531
Carg22715	Csa1G652280	Cucumber (Chinese Long) v2	carcuB0565
Carg22715	MELO3C010023	Melon (DHL92) v3.5.1	carmeB0540
Carg22715	ClCG03G010340	Watermelon (Charleston Gray)	carwcgB0519
Carg22715	CSPI01G32020	Wild cucumber (PI 183967)	carcpiB0571
Carg22715	Cucsa.356420	Cucumber (Gy14) v1	carcgyB0613
Carg22715	CmaCh11G009250	Cucurbita maxima (Rimu)	carcmaB0749
Carg22715	CmoCh11G009470	Cucurbita moschata (Rifu)	carcmoB0727
Carg22715	Lsi06G006760	Bottle gourd (USVL1VR-Ls)	carlsiB485
Carg22715	Cp4.1LG00g01450	Cucurbita pepo (Zucchini)	carcpeB0756
Carg22715	CsGy1G031030	Cucumber (Gy14) v2	carcgybB0542
Carg22715	MELO3C010023.2	Melon (DHL92) v3.6.1	carmedB0545
Carg22715	CsaV3_1G044300	Cucumber (Chinese Long) v3	carcucB0573
Carg22715	Cla97C03G061050	Watermelon (97103) v2	carwmbB0560
Carg22715	Bhi02G001108	Wax gourd	carwgoB0646

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg22715	Silver-seed gourd	carcarB502
Carg22715	Cucurbita maxima (Rimu)	carcmaB0748
Carg22715	Cucurbita moschata (Rifu)	carcmoB0726
Carg22715	Cucurbita pepo (Zucchini)	carcpeB0757