ClCG03G010340 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG03G010340
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Ycf20-like protein
Location	CG_Chr03 : 18568769 .. 18570923 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTTGAATAATTTTCTCGAATGGGTAACGATTTCTGAGGATGAGGGTTACCCACATCGTCCTTCGTTTGACGCCTTTCACCTCTAGGGTTTCATCTCGGCTCCATCAATACCGGCGGATTCTAAAGTTTCCGGCACCGTCAACCACTGCACCATATCCCTCCGGCAAGAACGAATTGCATTAGTATGTTTTAATTTATTGTTAAATTACTTGCTTGAATCTTCCTATGGCATAGGCCAACTAGACTGCAATTGTTTGATATTTCTCCTTTACATTTTGCATTTTGGTTACTCAAATTCATACCAGTTGGATGCATGATGGTATTAAAATGTTAATAAATCCCACTCGTTGATTTCAATTCTAAACATTAAATGTTTAGATTTGTGGAAAGATTCGTAGATTGAACAATTTCTTATGTTGATTTTAATTTGCAGGACAGATGCTGTCTCTTCTGATTGGAAGATTGTGTAATAAATGACAATGTCGGTATGCAAATGAGCATCTGCCAGATGGAAGCAGTGGTTTTGCAGTCCAGATTATTGACAATAGCGAATTATAGCTCCAAAGGGTCATGTCTTACTAATATGCCTTGCCTAATACATTACTGTGGCTATGAAGCTTTCTTTAATGGACACAATTCAAGCCTTTTCCTGAAATCTGCACCTTTTCCTCGAAAAAGGTAGACGTAGAATTTATAAACTTGTATACGTGTTGGTAGGAGGTCTGGCTATTCTTCTTGCGTATATTTCCATTTTAACTGTTGAATCCTTGGGTAATTAGATGAATGCTTATATTATATCGAGCACTAGAGAGGAATAGTAGGTGTTTTTAGAGAGATTGAGAGATTTTGGGAAGAGGCTTGAAGGGTTGCAAGGTTTAAAGTATATTTATGGGCGTATGCACTCTTTGTTTGTATGCACTCTTTACTTATAAGAAAATGAGAAATTAAGAATGGATACTTAATGTCCACTTTGATAATCATTTTGCTTTTATTTTATATTTTTTAAATTAAACCTGTAAGTTTCTTTATTTTGTGACTTACCTTTTAAAAACATTTTCAAAATCAATGTTAAATTTTTTATTTTAAAAAAATTGTTTCTAGACATTGTTTTTAACATCTTGTTTTGGAATTCAAATATGTGGTGAAAAATGTATCAAGAAAATTATGTGTTGTTAAGAGGCCTGGGCTATTCTTTTTGCGCATATTTCCATTTTACCATTGAATCCTTGGGTAATTAGATGAATGCATATGTTATATTGAGCACTAGAGAGGAATAGTAGGAATACGTTATATTGAGCACTAGAGATGCTAGGTTTAAAGCATCTTTATGGGCATATCCGCACTTTGTTTGTAATTACCAAGTTGGTCTCATTCATTTGGATTCGACTCCGTTCTTGTAGTTATTGTTGGGACTTTGACTCCTGTAGAATTGTTGTTTTGTATGTTCTTGTACTTCCATTTTTTTTCAATGAAAACTCGGTTATGTATGAAGAAAATTATGTATTAATGGTGTTATGAACATTCCCTTTGTGATGTTACTTCTTACAGTTTCCAGACGAGTAGACATCTCAAGAAATTAGCCTTTGCATTAGATACAGGTGGGGTATTTAGTAATGGTGGGGGAGACAACGTCGATGATGGTGATGAGTCCAATCTGGGTCGTACGCGATTAGGTAGGCTAGTTAGCTCAGGTGCCAGACAATTGCTAGAAAAGCTGAACTCAGCAAGAAAGAACTTCCCTACAAAGATATTTTTGCTTCTTTTGGGTTTCTATACAGCAAATGCACTTGCTACAATTCTTGGGCAGACGGGTGACTGGGATGTTTTGGTTGCTGGTGTGGTGGTTGCTGCCATCGAATGGATCGGTATTCTCATGTACAGGAAGCCGCCTCCTCTATTAACTAGGAGGTTGAAATCATTTATTGTGATGGTAAACTATTGGAAAGCTGGCGTGTGCTTAGGTCTCTTTGTTGATGCGTTCAAATTAGGGAGTTGAAAGATGTTGCTTCCTCAAATGAATAGAAAAATAGAGGTAATTCTTTTTACCTTAGAGGAAAATCACTTCTGTACACCAGGGATTTTTATTCCATTTGTGTTTCTTTTGTAACTGTGTAATCTTATAGATATCTGTTCTAGGACGTTTCTGTACTATAA

mRNA sequence

ATTTTGAATAATTTTCTCGAATGGGTAACGATTTCTGAGGATGAGGGTTACCCACATCGTCCTTCGTTTGACGCCTTTCACCTCTAGGGTTTCATCTCGGCTCCATCAATACCGGCGGATTCTAAAGTTTCCGGCACCGTCAACCACTGCACCATATCCCTCCGGCAAGAACGAATTGCATTAGACAGATGCTGTCTCTTCTGATTGGAAGATTGTGTAATAAATGACAATGTCGGTATGCAAATGAGCATCTGCCAGATGGAAGCAGTGGTTTTGCAGTCCAGATTATTGACAATAGCGAATTATAGCTCCAAAGGGTCATGTCTTACTAATATGCCTTGCCTAATACATTACTGTGGCTATGAAGCTTTCTTTAATGGACACAATTCAAGCCTTTTCCTGAAATCTGCACCTTTTCCTCGAAAAAGTTTCCAGACGAGTAGACATCTCAAGAAATTAGCCTTTGCATTAGATACAGGTGGGGTATTTAGTAATGGTGGGGGAGACAACGTCGATGATGGTGATGAGTCCAATCTGGGTCGTACGCGATTAGGTAGGCTAGTTAGCTCAGGTGCCAGACAATTGCTAGAAAAGCTGAACTCAGCAAGAAAGAACTTCCCTACAAAGATATTTTTGCTTCTTTTGGGTTTCTATACAGCAAATGCACTTGCTACAATTCTTGGGCAGACGGGTGACTGGGATGTTTTGGTTGCTGGTGTGGTGGTTGCTGCCATCGAATGGATCGGTATTCTCATGTACAGGAAGCCGCCTCCTCTATTAACTAGGAGGTTGAAATCATTTATTGTGATGGTAAACTATTGGAAAGCTGGCGTGTGCTTAGGTCTCTTTGTTGATGCGTTCAAATTAGGGAGTTGAAAGATGTTGCTTCCTCAAATGAATAGAAAAATAGAGGTAATTCTTTTTACCTTAGAGGAAAATCACTTCTGTACACCAGGGATTTTTATTCCATTTGTGTTTCTTTTGTAACTGTGTAATCTTATAGATATCTGTTCTAGGACGTTTCTGTACTATAA

Coding sequence (CDS)

ATGCAAATGAGCATCTGCCAGATGGAAGCAGTGGTTTTGCAGTCCAGATTATTGACAATAGCGAATTATAGCTCCAAAGGGTCATGTCTTACTAATATGCCTTGCCTAATACATTACTGTGGCTATGAAGCTTTCTTTAATGGACACAATTCAAGCCTTTTCCTGAAATCTGCACCTTTTCCTCGAAAAAGTTTCCAGACGAGTAGACATCTCAAGAAATTAGCCTTTGCATTAGATACAGGTGGGGTATTTAGTAATGGTGGGGGAGACAACGTCGATGATGGTGATGAGTCCAATCTGGGTCGTACGCGATTAGGTAGGCTAGTTAGCTCAGGTGCCAGACAATTGCTAGAAAAGCTGAACTCAGCAAGAAAGAACTTCCCTACAAAGATATTTTTGCTTCTTTTGGGTTTCTATACAGCAAATGCACTTGCTACAATTCTTGGGCAGACGGGTGACTGGGATGTTTTGGTTGCTGGTGTGGTGGTTGCTGCCATCGAATGGATCGGTATTCTCATGTACAGGAAGCCGCCTCCTCTATTAACTAGGAGGTTGAAATCATTTATTGTGATGGTAAACTATTGGAAAGCTGGCGTGTGCTTAGGTCTCTTTGTTGATGCGTTCAAATTAGGGAGTTGA

Protein sequence

MQMSICQMEAVVLQSRLLTIANYSSKGSCLTNMPCLIHYCGYEAFFNGHNSSLFLKSAPFPRKSFQTSRHLKKLAFALDTGGVFSNGGGDNVDDGDESNLGRTRLGRLVSSGARQLLEKLNSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS

Homology

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BLAST of ClCG03G010340 vs. Swiss-Prot
Match: YC20L_ARATH (Ycf20-like protein OS=Arabidopsis thaliana GN=At1g65420 PE=2 SV=2)

HSP 1 Score: 213.8 bits (543), Expect = 1.9e-54
Identity = 109/164 (66.46%), Postives = 129/164 (78.66%), Query Frame = 1


Query: 51  SSLFLKSAPFPRKSFQTSRHLKKLAFALDTGGVFSNGGGDNVD-DGDESNLGRTRLGRLV 110
           SS+ L S P+P KSFQ  R  +K+AFALDTG       G+  + +GD + LG TRLGR+ 
Sbjct: 34  SSITLTSFPYPMKSFQIRRPNRKIAFALDTGSSIPGDSGEGQEMNGDRTGLGSTRLGRIA 93

Query: 111 SSGARQLLEKLNSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWI 170
            +G +QLL K+NSARKNFP KIFLLLLGFYTANALATILGQTGDWDVLVAG+VVAAIE I
Sbjct: 94  IAGGKQLLGKINSARKNFPMKIFLLLLGFYTANALATILGQTGDWDVLVAGIVVAAIEGI 153

Query: 171 GILMYRKP-PPLLTRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS 213
           G+LMY+KP   + + +L+SF+V +N+WKAGVCLGLFVDAFKLGS
Sbjct: 154 GMLMYKKPSSSMFSGKLQSFVVFMNFWKAGVCLGLFVDAFKLGS 197

[Close]

BLAST of ClCG03G010340 vs. Swiss-Prot
Match: YCF20_MESVI (Uncharacterized protein ycf20 OS=Mesostigma viride GN=ycf20 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.3e-19
Identity = 57/118 (48.31%), Postives = 74/118 (62.71%), Query Frame = 1


Query: 100 LGRTRLGRLVSSGARQLLEKLNSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVA 159
           +  TRL    ++  + L  K+ +   NFP KI LLLLGF+ A  LAT+ GQTGDWDVLVA
Sbjct: 1   MSNTRLTLFFTNIFQLLDSKIQNYSINFPIKILLLLLGFFIATVLATVFGQTGDWDVLVA 60

Query: 160 GVVVAAIEWIGILMYRKPPPLLTRRLK---SF--IVMVNYWKAGVCLGLFVDAFKLGS 213
           G++VA IE +G  MY K    ++++     SF  ++ +NY K G+  GLFVDAFKLGS
Sbjct: 61  GILVAMIEILGNKMYSK--KYISKKQVFDISFLSLIGINYIKIGLIFGLFVDAFKLGS 116

[Close]

BLAST of ClCG03G010340 vs. Swiss-Prot
Match: YCF20_PORPU (Uncharacterized protein ycf20 OS=Porphyra purpurea GN=ycf20 PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.3e-12
Identity = 43/111 (38.74%), Postives = 59/111 (53.15%), Query Frame = 1


Query: 102 RTRLGRLVSSGARQLLEKLNSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGV 161
           RT+L    S   + L  +L  +       +  LLLGF+ +  L+TI GQTGDW ++ A +
Sbjct: 3   RTKLSIFFSYFVQNLSSRLYYSLNELTAGLISLLLGFFISTGLSTIPGQTGDWGIIAASL 62

Query: 162 VVAAIEWIGILMYRKPPPLLTRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS 213
           +VAAIE +  ++Y        R     I ++N  K G+  GLFVDAFKLGS
Sbjct: 63  IVAAIELVSKIVYSNKKKYGVR-----INLLNNLKIGITYGLFVDAFKLGS 108

[Close]

BLAST of ClCG03G010340 vs. Swiss-Prot
Match: YCF20_PYRYE (Uncharacterized protein ycf20 OS=Pyropia yezoensis GN=ycf20 PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.3e-12
Identity = 43/111 (38.74%), Postives = 60/111 (54.05%), Query Frame = 1


Query: 102 RTRLGRLVSSGARQLLEKLNSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGV 161
           +TRL    +   + L  KL  +     T +  LLLGF+ +  L+TI GQTGDW ++ A +
Sbjct: 3   KTRLSTFFAYLIKNLNNKLYYSLSELTTGLISLLLGFFISTGLSTIPGQTGDWGIIAASL 62

Query: 162 VVAAIEWIGILMYRKPPPLLTRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS 213
           +VAA E    ++Y        ++L   I + N +K G+  GLFVDAFKLGS
Sbjct: 63  IVAATELTSKIVYSS-----HKQLNIKINLFNNFKIGITYGLFVDAFKLGS 108

[Close]

BLAST of ClCG03G010340 vs. Swiss-Prot
Match: YCF20_GALSU (Uncharacterized protein ycf20 OS=Galdieria sulphuraria GN=ycf20 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 7.7e-08
Identity = 30/78 (38.46%), Postives = 44/78 (56.41%), Query Frame = 1


Query: 135 LLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTRRLKSFIVMVNY 194
           LLG +++N L TI  QTGDW + +   ++A  E I  + Y +    + +  K+ I   N 
Sbjct: 9   LLGIFSSNLLCTIYTQTGDWSLYLTSCIIALYEIISYISYNQ---FIKKTHKNIINCFNG 68

Query: 195 WKAGVCLGLFVDAFKLGS 213
           +K G+  GL++DAFKLGS
Sbjct: 69  FKIGLIYGLYLDAFKLGS 83

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BLAST of ClCG03G010340 vs. TrEMBL
Match: A0A0A0LXR2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G652280 PE=4 SV=1)

HSP 1 Score: 379.4 bits (973), Expect = 2.8e-102
Identity = 189/212 (89.15%), Postives = 197/212 (92.92%), Query Frame = 1


Query: 1   MQMSICQMEAVVLQSRLLTIANYSSKGSCLTNMPCLIHYCGYEAFFNGHNSSLFLKSAPF 60
           M++ I QM AV+L SRLLT ANYS + SCLTNMPCLIHY GYEA FNG +SS  LKSAPF
Sbjct: 1   MEVGIFQMGAVILHSRLLTTANYSPQVSCLTNMPCLIHYWGYEAIFNGRSSSFLLKSAPF 60

Query: 61  PRKSFQTSRHLKKLAFALDTGGVFSNGGGDNVDDGDESNLGRTRLGRLVSSGARQLLEKL 120
           PRKS QTSRH+ KLAFALDTGGV S+GGGDN+DDGDESNLGRTRLGRLVSSGARQLLEKL
Sbjct: 61  PRKSLQTSRHVNKLAFALDTGGVSSSGGGDNIDDGDESNLGRTRLGRLVSSGARQLLEKL 120

Query: 121 NSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPL 180
           NSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPL
Sbjct: 121 NSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPL 180

Query: 181 LTRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS 213
           LTRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS
Sbjct: 181 LTRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS 212

[Close]

BLAST of ClCG03G010340 vs. TrEMBL
Match: A0A061EXE3_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_025117 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 1.3e-67
Identity = 142/208 (68.27%), Postives = 162/208 (77.88%), Query Frame = 1


Query: 6   CQMEAVVLQSRLLTIANYSSKGSCLTNMPCLIHYCGYEAFFNGHNSSLFLKSAPFPRKSF 65
           CQ+  + LQ+ L  + N   + SC+T   C I     E    G  S + LKSA FP+KSF
Sbjct: 3   CQVGRMYLQAGLSILENEVLESSCMTLATCAIQRWIIEPSICGQASKIGLKSALFPKKSF 62

Query: 66  QT-SRHLKKLAFALDTGGVFSNGGGDNVDDGDESNLGRTRLGRLVSSGARQLLEKLNSAR 125
            T  RH  K+AFALDTGGV  +GG D+++  D SNLG TRLGR+VS+G+RQLLEKLNSAR
Sbjct: 63  STRKRHGWKIAFALDTGGVSGDGGEDSLNS-DSSNLGGTRLGRIVSAGSRQLLEKLNSAR 122

Query: 126 KNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTRR 185
           KNFP K+FLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIE IG+LMYRKPP L T R
Sbjct: 123 KNFPMKVFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEGIGMLMYRKPPSLKTGR 182

Query: 186 LKSFIVMVNYWKAGVCLGLFVDAFKLGS 213
           L+SF+VMVNYWKAGVCLGLFVDAFKLGS
Sbjct: 183 LQSFVVMVNYWKAGVCLGLFVDAFKLGS 209

[Close]

BLAST of ClCG03G010340 vs. TrEMBL
Match: A0A067JSH3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18069 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 6.2e-65
Identity = 133/207 (64.25%), Postives = 158/207 (76.33%), Query Frame = 1


Query: 6   CQMEAVVLQSRLLTIANYSSKGSCLTNMPCLIHYCGYEAFFNGHNSSLFLKSAPFPRKSF 65
           CQ+E  +L+S LL +    SK SC+ +  C +        F+G  S + +   PF ++ F
Sbjct: 3   CQLEFRMLRSGLLAMETEVSKRSCINHATCAMQNWSVAPNFSGQTSKIGVNFPPFLKQRF 62

Query: 66  QTSRHLKKLAFALDTGGVFSNGGGDNVDDGDESNLGRTRLGRLVSSGARQLLEKLNSARK 125
           Q  R   ++ FALDTGG+  NGG +N+D GD S LG TRLGR+VS+G+RQLL+KLNSARK
Sbjct: 63  QLRRCDWRIPFALDTGGIAGNGGPENLD-GDSSGLGGTRLGRIVSAGSRQLLQKLNSARK 122

Query: 126 NFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTRRL 185
           NFP KIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIE IG+LMY+KP  L T RL
Sbjct: 123 NFPMKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEGIGMLMYKKPTSLSTGRL 182

Query: 186 KSFIVMVNYWKAGVCLGLFVDAFKLGS 213
           +SF+VMVNYWKAGVCLGLFVDAFKLGS
Sbjct: 183 QSFVVMVNYWKAGVCLGLFVDAFKLGS 208

[Close]

BLAST of ClCG03G010340 vs. TrEMBL
Match: D7U6I2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0207g00110 PE=4 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 1.1e-64
Identity = 137/208 (65.87%), Postives = 160/208 (76.92%), Query Frame = 1


Query: 6   CQMEAVVLQSRLLTIANYSSKGSCLT-NMPCLIHYCGYEAFFNGHNSSLFLKSAPFPRKS 65
           C+M  ++LQS L    + SS  S +T    C I     E  F+G  S L +KSAPFPRKS
Sbjct: 19  CRMGGIMLQSTLSVPESESSDCSYITFTTCCTIQNWNNEPSFSGQISKLGMKSAPFPRKS 78

Query: 66  FQTSRHLKKLAFALDTGGVFSNGGGDNVDDGDESNLGRTRLGRLVSSGARQLLEKLNSAR 125
           FQT RH  K AFALDTGG+  NGG +N++ G+  +LG+TRLGR+VS+G RQLL KLNSAR
Sbjct: 79  FQTRRHGWKTAFALDTGGIPDNGGQENLN-GNGPDLGQTRLGRIVSAGGRQLLAKLNSAR 138

Query: 126 KNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTRR 185
           KNFP K+FLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIE IG+L+Y+K     T R
Sbjct: 139 KNFPMKVFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEGIGMLVYKKSSSQSTGR 198

Query: 186 LKSFIVMVNYWKAGVCLGLFVDAFKLGS 213
           L+S +VM+NYWKAGVCLGLFVDAFKLGS
Sbjct: 199 LQSLVVMINYWKAGVCLGLFVDAFKLGS 225

[Close]

BLAST of ClCG03G010340 vs. TrEMBL
Match: B9HHY4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s07660g PE=4 SV=2)

HSP 1 Score: 253.8 bits (647), Expect = 1.8e-64
Identity = 131/207 (63.29%), Postives = 155/207 (74.88%), Query Frame = 1


Query: 6   CQMEAVVLQSRLLTIANYSSKGSCLTNMPCLIHYCGYEAFFNGHNSSLFLKSAPFPRKSF 65
           CQ+ A +LQS L  + N  S+ +C+T   C +     E  F+G  S + +K  PF +  F
Sbjct: 3   CQVGARMLQSGLSVMVNEVSERTCITIATCAMQNRNSEPSFSGQASKIGIKFVPFQKTRF 62

Query: 66  QTSRHLKKLAFALDTGGVFSNGGGDNVDDGDESNLGRTRLGRLVSSGARQLLEKLNSARK 125
           Q  R   ++AFALDTGG+  NGG +NV+      LG TRLGR+VS+G RQLLEKLNSARK
Sbjct: 63  QLRRQGWRIAFALDTGGLPGNGGQENVNGDSPPGLGGTRLGRIVSAGGRQLLEKLNSARK 122

Query: 126 NFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTRRL 185
           NFP KIFLLLLGFYTANALATILGQTGDWDVLVAG+VVAAIE IG+LMY+KP  L TRRL
Sbjct: 123 NFPMKIFLLLLGFYTANALATILGQTGDWDVLVAGIVVAAIEGIGMLMYKKPSSLSTRRL 182

Query: 186 KSFIVMVNYWKAGVCLGLFVDAFKLGS 213
           + F+ M+NYWKAGVCLGLFVDAFKLGS
Sbjct: 183 QYFVAMMNYWKAGVCLGLFVDAFKLGS 209

[Close]

BLAST of ClCG03G010340 vs. TAIR10
Match: AT1G65420.1 (AT1G65420.1 Protein of unknown function (DUF565))

HSP 1 Score: 213.8 bits (543), Expect = 1.0e-55
Identity = 109/164 (66.46%), Postives = 129/164 (78.66%), Query Frame = 1


Query: 51  SSLFLKSAPFPRKSFQTSRHLKKLAFALDTGGVFSNGGGDNVD-DGDESNLGRTRLGRLV 110
           SS+ L S P+P KSFQ  R  +K+AFALDTG       G+  + +GD + LG TRLGR+ 
Sbjct: 34  SSITLTSFPYPMKSFQIRRPNRKIAFALDTGSSIPGDSGEGQEMNGDRTGLGSTRLGRIA 93

Query: 111 SSGARQLLEKLNSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWI 170
            +G +QLL K+NSARKNFP KIFLLLLGFYTANALATILGQTGDWDVLVAG+VVAAIE I
Sbjct: 94  IAGGKQLLGKINSARKNFPMKIFLLLLGFYTANALATILGQTGDWDVLVAGIVVAAIEGI 153

Query: 171 GILMYRKP-PPLLTRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS 213
           G+LMY+KP   + + +L+SF+V +N+WKAGVCLGLFVDAFKLGS
Sbjct: 154 GMLMYKKPSSSMFSGKLQSFVVFMNFWKAGVCLGLFVDAFKLGS 197

[Close]

BLAST of ClCG03G010340 vs. TAIR10
Match: AT3G56830.1 (AT3G56830.1 Protein of unknown function (DUF565))

HSP 1 Score: 115.5 bits (288), Expect = 3.9e-26
Identity = 61/145 (42.07%), Postives = 88/145 (60.69%), Query Frame = 1


Query: 69  RHLKKLAFALDTGGVFSNGGGDNVDDGDESNLGRT----RLGRLVSSGARQLLEKLNSAR 128
           RH +++++      + S+ GGD  D    S+   +    RL + +     +LL K+   +
Sbjct: 48  RHQRRMSWTT----IKSSVGGDRFDPASGSSSNNSSRGLRLIKAIQVLRSKLLVKIQEIK 107

Query: 129 KNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTRR 188
           K+ P K+F LL+GFY+A A +T +GQTGDWDVL AG+ V  +E IG LMYR   PL+  +
Sbjct: 108 KDLPKKLFFLLVGFYSATAFSTFIGQTGDWDVLSAGLAVLVVECIGALMYRASIPLI-NK 167

Query: 189 LKSFIVMVNYWKAGVCLGLFVDAFK 210
           ++S I M NYWK G+ LGLF+D+FK
Sbjct: 168 MRSTITMFNYWKTGLALGLFLDSFK 187

[Close]

BLAST of ClCG03G010340 vs. NCBI nr
Match: gi|449442657|ref|XP_004139097.1| (PREDICTED: ycf20-like protein [Cucumis sativus])

HSP 1 Score: 379.4 bits (973), Expect = 4.1e-102
Identity = 189/212 (89.15%), Postives = 197/212 (92.92%), Query Frame = 1


Query: 1   MQMSICQMEAVVLQSRLLTIANYSSKGSCLTNMPCLIHYCGYEAFFNGHNSSLFLKSAPF 60
           M++ I QM AV+L SRLLT ANYS + SCLTNMPCLIHY GYEA FNG +SS  LKSAPF
Sbjct: 1   MEVGIFQMGAVILHSRLLTTANYSPQVSCLTNMPCLIHYWGYEAIFNGRSSSFLLKSAPF 60

Query: 61  PRKSFQTSRHLKKLAFALDTGGVFSNGGGDNVDDGDESNLGRTRLGRLVSSGARQLLEKL 120
           PRKS QTSRH+ KLAFALDTGGV S+GGGDN+DDGDESNLGRTRLGRLVSSGARQLLEKL
Sbjct: 61  PRKSLQTSRHVNKLAFALDTGGVSSSGGGDNIDDGDESNLGRTRLGRLVSSGARQLLEKL 120

Query: 121 NSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPL 180
           NSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPL
Sbjct: 121 NSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPL 180

Query: 181 LTRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS 213
           LTRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS
Sbjct: 181 LTRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS 212

[Close]

BLAST of ClCG03G010340 vs. NCBI nr
Match: gi|659086607|ref|XP_008444023.1| (PREDICTED: ycf20-like protein [Cucumis melo])

HSP 1 Score: 288.9 bits (738), Expect = 7.3e-75
Identity = 144/151 (95.36%), Postives = 147/151 (97.35%), Query Frame = 1


Query: 62  RKSFQTSRHLKKLAFALDTGGVFSNGGGDNVDDGDESNLGRTRLGRLVSSGARQLLEKLN 121
           R  FQTSRH+ K+AFALDTGGV S+GGGDNVDDGDESNLGRTRLGRLVSSGARQLLEKLN
Sbjct: 67  RCGFQTSRHVNKIAFALDTGGVSSSGGGDNVDDGDESNLGRTRLGRLVSSGARQLLEKLN 126

Query: 122 SARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLL 181
           SARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLL
Sbjct: 127 SARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLL 186

Query: 182 TRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS 213
           TRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS
Sbjct: 187 TRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS 217

[Close]

BLAST of ClCG03G010340 vs. NCBI nr
Match: gi|590637811|ref|XP_007029223.1| (Uncharacterized protein TCM_025117 [Theobroma cacao])

HSP 1 Score: 264.2 bits (674), Expect = 1.9e-67
Identity = 142/208 (68.27%), Postives = 162/208 (77.88%), Query Frame = 1


Query: 6   CQMEAVVLQSRLLTIANYSSKGSCLTNMPCLIHYCGYEAFFNGHNSSLFLKSAPFPRKSF 65
           CQ+  + LQ+ L  + N   + SC+T   C I     E    G  S + LKSA FP+KSF
Sbjct: 3   CQVGRMYLQAGLSILENEVLESSCMTLATCAIQRWIIEPSICGQASKIGLKSALFPKKSF 62

Query: 66  QT-SRHLKKLAFALDTGGVFSNGGGDNVDDGDESNLGRTRLGRLVSSGARQLLEKLNSAR 125
            T  RH  K+AFALDTGGV  +GG D+++  D SNLG TRLGR+VS+G+RQLLEKLNSAR
Sbjct: 63  STRKRHGWKIAFALDTGGVSGDGGEDSLNS-DSSNLGGTRLGRIVSAGSRQLLEKLNSAR 122

Query: 126 KNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTRR 185
           KNFP K+FLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIE IG+LMYRKPP L T R
Sbjct: 123 KNFPMKVFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEGIGMLMYRKPPSLKTGR 182

Query: 186 LKSFIVMVNYWKAGVCLGLFVDAFKLGS 213
           L+SF+VMVNYWKAGVCLGLFVDAFKLGS
Sbjct: 183 LQSFVVMVNYWKAGVCLGLFVDAFKLGS 209

[Close]

BLAST of ClCG03G010340 vs. NCBI nr
Match: gi|1009114571|ref|XP_015873760.1| (PREDICTED: ycf20-like protein isoform X1 [Ziziphus jujuba])

HSP 1 Score: 258.1 bits (658), Expect = 1.4e-65
Identity = 139/207 (67.15%), Postives = 159/207 (76.81%), Query Frame = 1


Query: 6   CQMEAVVLQSRLLTIANYSSKGSCLTNMPCLIHYCGYEAFFNGHNSSLFLKSAPFPRKSF 65
           CQM  ++L      I N +S+ SC +   C I     E  FNG N+ + + SAPFPR SF
Sbjct: 3   CQMGTMMLHPVTSKIENETSERSCFSIATCSIQNWTSEPSFNGQNTKIGINSAPFPR-SF 62

Query: 66  QTSRHLKKLAFALDTGGVFSNGGGDNVDDGDESNLGRTRLGRLVSSGARQLLEKLNSARK 125
            T R   KLAFALDTGGV  N    +V+ GD  +LGRTRLGR+VS+G RQLLEKLNSARK
Sbjct: 63  LTRRRGWKLAFALDTGGVPGNDEQGSVN-GDSPDLGRTRLGRIVSAGGRQLLEKLNSARK 122

Query: 126 NFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTRRL 185
           NFP K+FLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIE IG+LMYRKPP + + RL
Sbjct: 123 NFPMKVFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEGIGMLMYRKPPYVPSERL 182

Query: 186 KSFIVMVNYWKAGVCLGLFVDAFKLGS 213
           +SF+VM+NYWKAGVCLGLFVDAFKLGS
Sbjct: 183 QSFVVMMNYWKAGVCLGLFVDAFKLGS 207

[Close]

BLAST of ClCG03G010340 vs. NCBI nr
Match: gi|802724674|ref|XP_012085809.1| (PREDICTED: ycf20-like protein [Jatropha curcas])

HSP 1 Score: 255.4 bits (651), Expect = 8.9e-65
Identity = 133/207 (64.25%), Postives = 158/207 (76.33%), Query Frame = 1


Query: 6   CQMEAVVLQSRLLTIANYSSKGSCLTNMPCLIHYCGYEAFFNGHNSSLFLKSAPFPRKSF 65
           CQ+E  +L+S LL +    SK SC+ +  C +        F+G  S + +   PF ++ F
Sbjct: 3   CQLEFRMLRSGLLAMETEVSKRSCINHATCAMQNWSVAPNFSGQTSKIGVNFPPFLKQRF 62

Query: 66  QTSRHLKKLAFALDTGGVFSNGGGDNVDDGDESNLGRTRLGRLVSSGARQLLEKLNSARK 125
           Q  R   ++ FALDTGG+  NGG +N+D GD S LG TRLGR+VS+G+RQLL+KLNSARK
Sbjct: 63  QLRRCDWRIPFALDTGGIAGNGGPENLD-GDSSGLGGTRLGRIVSAGSRQLLQKLNSARK 122

Query: 126 NFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTRRL 185
           NFP KIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIE IG+LMY+KP  L T RL
Sbjct: 123 NFPMKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEGIGMLMYKKPTSLSTGRL 182

Query: 186 KSFIVMVNYWKAGVCLGLFVDAFKLGS 213
           +SF+VMVNYWKAGVCLGLFVDAFKLGS
Sbjct: 183 QSFVVMVNYWKAGVCLGLFVDAFKLGS 208

The following BLAST results are available for this feature:

BLAST of ClCG03G010340 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YC20L_ARATH	1.9e-54	66.46	Ycf20-like protein OS=Arabidopsis thaliana GN=At1g65420 PE=2 SV=2	[more]
YCF20_MESVI	3.3e-19	48.31	Uncharacterized protein ycf20 OS=Mesostigma viride GN=ycf20 PE=3 SV=1	[more]
YCF20_PORPU	1.3e-12	38.74	Uncharacterized protein ycf20 OS=Porphyra purpurea GN=ycf20 PE=3 SV=1	[more]
YCF20_PYRYE	1.3e-12	38.74	Uncharacterized protein ycf20 OS=Pyropia yezoensis GN=ycf20 PE=3 SV=1	[more]
YCF20_GALSU	7.7e-08	38.46	Uncharacterized protein ycf20 OS=Galdieria sulphuraria GN=ycf20 PE=3 SV=1	[more]

BLAST of ClCG03G010340 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXR2_CUCSA	2.8e-102	89.15	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G652280 PE=4 SV=1	[more]
A0A061EXE3_THECC	1.3e-67	68.27	Uncharacterized protein OS=Theobroma cacao GN=TCM_025117 PE=4 SV=1	[more]
A0A067JSH3_JATCU	6.2e-65	64.25	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18069 PE=4 SV=1	[more]
D7U6I2_VITVI	1.1e-64	65.87	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0207g00110 PE=4 SV=...	[more]
B9HHY4_POPTR	1.8e-64	63.29	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s07660g PE=4 SV=2	[more]

BLAST of ClCG03G010340 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G65420.1	1.0e-55	66.46	Protein of unknown function (DUF565)	[more]
AT3G56830.1	3.9e-26	42.07	Protein of unknown function (DUF565)	[more]

BLAST of ClCG03G010340 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449442657\|ref\|XP_004139097.1\|	4.1e-102	89.15	PREDICTED: ycf20-like protein [Cucumis sativus]	[more]
gi\|659086607\|ref\|XP_008444023.1\|	7.3e-75	95.36	PREDICTED: ycf20-like protein [Cucumis melo]	[more]
gi\|590637811\|ref\|XP_007029223.1\|	1.9e-67	68.27	Uncharacterized protein TCM_025117 [Theobroma cacao]	[more]
gi\|1009114571\|ref\|XP_015873760.1\|	1.4e-65	67.15	PREDICTED: ycf20-like protein isoform X1 [Ziziphus jujuba]	[more]
gi\|802724674\|ref\|XP_012085809.1\|	8.9e-65	64.25	PREDICTED: ycf20-like protein [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007572	Uncharacterised_Ycf20

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0010196	nonphotochemical quenching
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG03G010340.1	ClCG03G010340.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007572	Uncharacterised protein family Ycf20	PFAM	PF04483	DUF565	coord: 150..212 score: 1.4
None	No IPR available	PANTHER	PTHR33787	FAMILY NOT NAMED	coord: 6..212 score: 6.3E
None	No IPR available	PANTHER	PTHR33787:SF4	YCF20-LIKE PROTEIN	coord: 6..212 score: 6.3E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG03G010340	Csa1G652280	Cucumber (Chinese Long) v2	cuwcgB038
ClCG03G010340	MELO3C010023	Melon (DHL92) v3.5.1	mewcgB239
ClCG03G010340	Cla009511	Watermelon (97103) v1	wcgwmB225
ClCG03G010340	Cla97C03G061050	Watermelon (97103) v2	wcgwmbB186
ClCG03G010340	Bhi02G001108	Wax gourd	wcgwgoB369
ClCG03G010340	CSPI01G32020	Wild cucumber (PI 183967)	cpiwcgB041
ClCG03G010340	Cucsa.356420	Cucumber (Gy14) v1	cgywcgB605
ClCG03G010340	CmaCh11G009250	Cucurbita maxima (Rimu)	cmawcgB108
ClCG03G010340	CmoCh11G009470	Cucurbita moschata (Rifu)	cmowcgB098
ClCG03G010340	Lsi06G006760	Bottle gourd (USVL1VR-Ls)	lsiwcgB361
ClCG03G010340	Cp4.1LG00g01450	Cucurbita pepo (Zucchini)	cpewcgB012
ClCG03G010340	CsGy1G031030	Cucumber (Gy14) v2	cgybwcgB036
ClCG03G010340	MELO3C010023.2	Melon (DHL92) v3.6.1	medwcgB230
ClCG03G010340	Carg22715	Silver-seed gourd	carwcgB0519
ClCG03G010340	CsaV3_1G044300	Cucumber (Chinese Long) v3	cucwcgB041

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG03G010340	Silver-seed gourd	carwcgB0945
ClCG03G010340	Cucurbita maxima (Rimu)	cmawcgB058
ClCG03G010340	Cucurbita moschata (Rifu)	cmowcgB050
ClCG03G010340	Cucurbita pepo (Zucchini)	cpewcgB322