Cla009511 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla009511
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Ycf20-like protein (AHRD V1 ***- YC20L_ARATH); contains Interpro domain(s) IPR007572 Protein of unknown function DUF565
Location	Chr3 : 15082512 .. 15082850 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTCGTACGCGATTAGGTAGGCTAGTTAGCTCAGGTGCCAGACAATTGCTAGAAAAGCTGAACTCAGCAAGAAAGAACTTCCCTACAAAGATATTTTTGCTTCTTTTGGGTTTCTATACAGCAAATGCACTTGCTACAATTCTTGGGCAGACGGGTGACTGGGATGTTTTGGTTGCTGGTGTGGTGGTTGCTGCCATCGAATGGATCGGTATTCTCATGTACAGGAAGCCGCCTCCTCTATTAACTAGGAGGTTGAAATCATTTATTGTGATGGTAAACTATTGGAAAGCTGGCGTGTGCTTAGGTCTCTTTGTTGATGCGTTCAAATTAGGGAGTTGA

mRNA sequence

GGTCGTACGCGATTAGGTAGGCTAGTTAGCTCAGGTGCCAGACAATTGCTAGAAAAGCTGAACTCAGCAAGAAAGAACTTCCCTACAAAGATATTTTTGCTTCTTTTGGGTTTCTATACAGCAAATGCACTTGCTACAATTCTTGGGCAGACGGGTGACTGGGATGTTTTGGTTGCTGGTGTGGTGGTTGCTGCCATCGAATGGATCGGTATTCTCATGTACAGGAAGCCGCCTCCTCTATTAACTAGGAGGTTGAAATCATTTATTGTGATGGTAAACTATTGGAAAGCTGGCGTGTGCTTAGGTCTCTTTGTTGATGCGTTCAAATTAGGGAGTTGA

Coding sequence (CDS)

GGTCGTACGCGATTAGGTAGGCTAGTTAGCTCAGGTGCCAGACAATTGCTAGAAAAGCTGAACTCAGCAAGAAAGAACTTCCCTACAAAGATATTTTTGCTTCTTTTGGGTTTCTATACAGCAAATGCACTTGCTACAATTCTTGGGCAGACGGGTGACTGGGATGTTTTGGTTGCTGGTGTGGTGGTTGCTGCCATCGAATGGATCGGTATTCTCATGTACAGGAAGCCGCCTCCTCTATTAACTAGGAGGTTGAAATCATTTATTGTGATGGTAAACTATTGGAAAGCTGGCGTGTGCTTAGGTCTCTTTGTTGATGCGTTCAAATTAGGGAGTTGA

Protein sequence

GRTRLGRLVSSGARQLLEKLNSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS

Homology

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BLAST of Cla009511 vs. Swiss-Prot
Match: YC20L_ARATH (Ycf20-like protein OS=Arabidopsis thaliana GN=At1g65420 PE=2 SV=2)

HSP 1 Score: 174.9 bits (442), Expect = 5.1e-43
Identity = 86/113 (76.11%), Postives = 98/113 (86.73%), Query Frame = 1


Query: 1   GRTRLGRLVSSGARQLLEKLNSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAG 60
           G TRLGR+  +G +QLL K+NSARKNFP KIFLLLLGFYTANALATILGQTGDWDVLVAG
Sbjct: 85  GSTRLGRIAIAGGKQLLGKINSARKNFPMKIFLLLLGFYTANALATILGQTGDWDVLVAG 144

Query: 61  VVVAAIEWIGILMYRKP-PPLLTRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS 113
           +VVAAIE IG+LMY+KP   + + +L+SF+V +N+WKAGVCLGLFVDAFKLGS
Sbjct: 145 IVVAAIEGIGMLMYKKPSSSMFSGKLQSFVVFMNFWKAGVCLGLFVDAFKLGS 197

[Close]

BLAST of Cla009511 vs. Swiss-Prot
Match: YCF20_MESVI (Uncharacterized protein ycf20 OS=Mesostigma viride GN=ycf20 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 3.0e-19
Identity = 57/115 (49.57%), Postives = 73/115 (63.48%), Query Frame = 1


Query: 3   TRLGRLVSSGARQLLEKLNSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVV 62
           TRL    ++  + L  K+ +   NFP KI LLLLGF+ A  LAT+ GQTGDWDVLVAG++
Sbjct: 4   TRLTLFFTNIFQLLDSKIQNYSINFPIKILLLLLGFFIATVLATVFGQTGDWDVLVAGIL 63

Query: 63  VAAIEWIGILMYRKPPPLLTRRLK---SF--IVMVNYWKAGVCLGLFVDAFKLGS 113
           VA IE +G  MY K    ++++     SF  ++ +NY K G+  GLFVDAFKLGS
Sbjct: 64  VAMIEILGNKMYSK--KYISKKQVFDISFLSLIGINYIKIGLIFGLFVDAFKLGS 116

[Close]

BLAST of Cla009511 vs. Swiss-Prot
Match: YCF20_PORPU (Uncharacterized protein ycf20 OS=Porphyra purpurea GN=ycf20 PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 7.1e-13
Identity = 43/111 (38.74%), Postives = 59/111 (53.15%), Query Frame = 1


Query: 2   RTRLGRLVSSGARQLLEKLNSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGV 61
           RT+L    S   + L  +L  +       +  LLLGF+ +  L+TI GQTGDW ++ A +
Sbjct: 3   RTKLSIFFSYFVQNLSSRLYYSLNELTAGLISLLLGFFISTGLSTIPGQTGDWGIIAASL 62

Query: 62  VVAAIEWIGILMYRKPPPLLTRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS 113
           +VAAIE +  ++Y        R     I ++N  K G+  GLFVDAFKLGS
Sbjct: 63  IVAAIELVSKIVYSNKKKYGVR-----INLLNNLKIGITYGLFVDAFKLGS 108

[Close]

BLAST of Cla009511 vs. Swiss-Prot
Match: YCF20_PYRYE (Uncharacterized protein ycf20 OS=Pyropia yezoensis GN=ycf20 PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 7.1e-13
Identity = 43/111 (38.74%), Postives = 60/111 (54.05%), Query Frame = 1


Query: 2   RTRLGRLVSSGARQLLEKLNSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGV 61
           +TRL    +   + L  KL  +     T +  LLLGF+ +  L+TI GQTGDW ++ A +
Sbjct: 3   KTRLSTFFAYLIKNLNNKLYYSLSELTTGLISLLLGFFISTGLSTIPGQTGDWGIIAASL 62

Query: 62  VVAAIEWIGILMYRKPPPLLTRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS 113
           +VAA E    ++Y        ++L   I + N +K G+  GLFVDAFKLGS
Sbjct: 63  IVAATELTSKIVYSS-----HKQLNIKINLFNNFKIGITYGLFVDAFKLGS 108

[Close]

BLAST of Cla009511 vs. Swiss-Prot
Match: YCF20_GALSU (Uncharacterized protein ycf20 OS=Galdieria sulphuraria GN=ycf20 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.0e-08
Identity = 30/78 (38.46%), Postives = 44/78 (56.41%), Query Frame = 1


Query: 35  LLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTRRLKSFIVMVNY 94
           LLG +++N L TI  QTGDW + +   ++A  E I  + Y +    + +  K+ I   N 
Sbjct: 9   LLGIFSSNLLCTIYTQTGDWSLYLTSCIIALYEIISYISYNQ---FIKKTHKNIINCFNG 68

Query: 95  WKAGVCLGLFVDAFKLGS 113
           +K G+  GL++DAFKLGS
Sbjct: 69  FKIGLIYGLYLDAFKLGS 83

[Close]

BLAST of Cla009511 vs. TrEMBL
Match: A0A0A0LXR2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G652280 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 8.1e-56
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 1


Query: 1   GRTRLGRLVSSGARQLLEKLNSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAG 60
           GRTRLGRLVSSGARQLLEKLNSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAG
Sbjct: 101 GRTRLGRLVSSGARQLLEKLNSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAG 160

Query: 61  VVVAAIEWIGILMYRKPPPLLTRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS 113
           VVVAAIEWIGILMYRKPPPLLTRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS
Sbjct: 161 VVVAAIEWIGILMYRKPPPLLTRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS 212

[Close]

BLAST of Cla009511 vs. TrEMBL
Match: A0A061EXE3_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_025117 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 2.1e-48
Identity = 99/112 (88.39%), Postives = 106/112 (94.64%), Query Frame = 1


Query: 1   GRTRLGRLVSSGARQLLEKLNSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAG 60
           G TRLGR+VS+G+RQLLEKLNSARKNFP K+FLLLLGFYTANALATILGQTGDWDVLVAG
Sbjct: 98  GGTRLGRIVSAGSRQLLEKLNSARKNFPMKVFLLLLGFYTANALATILGQTGDWDVLVAG 157

Query: 61  VVVAAIEWIGILMYRKPPPLLTRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS 113
           VVVAAIE IG+LMYRKPP L T RL+SF+VMVNYWKAGVCLGLFVDAFKLGS
Sbjct: 158 VVVAAIEGIGMLMYRKPPSLKTGRLQSFVVMVNYWKAGVCLGLFVDAFKLGS 209

[Close]

BLAST of Cla009511 vs. TrEMBL
Match: A0A067JSH3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18069 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 6.9e-47
Identity = 97/112 (86.61%), Postives = 105/112 (93.75%), Query Frame = 1


Query: 1   GRTRLGRLVSSGARQLLEKLNSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAG 60
           G TRLGR+VS+G+RQLL+KLNSARKNFP KIFLLLLGFYTANALATILGQTGDWDVLVAG
Sbjct: 97  GGTRLGRIVSAGSRQLLQKLNSARKNFPMKIFLLLLGFYTANALATILGQTGDWDVLVAG 156

Query: 61  VVVAAIEWIGILMYRKPPPLLTRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS 113
           VVVAAIE IG+LMY+KP  L T RL+SF+VMVNYWKAGVCLGLFVDAFKLGS
Sbjct: 157 VVVAAIEGIGMLMYKKPTSLSTGRLQSFVVMVNYWKAGVCLGLFVDAFKLGS 208

[Close]

BLAST of Cla009511 vs. TrEMBL
Match: A0A0D2NYF7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G088400 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 9.0e-47
Identity = 98/112 (87.50%), Postives = 103/112 (91.96%), Query Frame = 1


Query: 1   GRTRLGRLVSSGARQLLEKLNSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAG 60
           G TRLGR+VS+G RQLLEKLNSARKNFP KIFLLLLGFYTANALATILGQTGDWDVLVAG
Sbjct: 129 GGTRLGRIVSAGGRQLLEKLNSARKNFPMKIFLLLLGFYTANALATILGQTGDWDVLVAG 188

Query: 61  VVVAAIEWIGILMYRKPPPLLTRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS 113
           VVVAAIE IG+LMYRK P L T RL+S +VMVNYWKAGVCLGLFVDAFKLGS
Sbjct: 189 VVVAAIEGIGMLMYRKSPSLKTGRLQSIVVMVNYWKAGVCLGLFVDAFKLGS 240

[Close]

BLAST of Cla009511 vs. TrEMBL
Match: A0A0D2QQF2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G088400 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 9.0e-47
Identity = 98/112 (87.50%), Postives = 103/112 (91.96%), Query Frame = 1


Query: 1   GRTRLGRLVSSGARQLLEKLNSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAG 60
           G TRLGR+VS+G RQLLEKLNSARKNFP KIFLLLLGFYTANALATILGQTGDWDVLVAG
Sbjct: 99  GGTRLGRIVSAGGRQLLEKLNSARKNFPMKIFLLLLGFYTANALATILGQTGDWDVLVAG 158

Query: 61  VVVAAIEWIGILMYRKPPPLLTRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS 113
           VVVAAIE IG+LMYRK P L T RL+S +VMVNYWKAGVCLGLFVDAFKLGS
Sbjct: 159 VVVAAIEGIGMLMYRKSPSLKTGRLQSIVVMVNYWKAGVCLGLFVDAFKLGS 210

[Close]

BLAST of Cla009511 vs. NCBI nr
Match: gi|449442657|ref|XP_004139097.1| (PREDICTED: ycf20-like protein [Cucumis sativus])

HSP 1 Score: 224.2 bits (570), Expect = 1.2e-55
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 1


Query: 1   GRTRLGRLVSSGARQLLEKLNSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAG 60
           GRTRLGRLVSSGARQLLEKLNSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAG
Sbjct: 101 GRTRLGRLVSSGARQLLEKLNSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAG 160

Query: 61  VVVAAIEWIGILMYRKPPPLLTRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS 113
           VVVAAIEWIGILMYRKPPPLLTRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS
Sbjct: 161 VVVAAIEWIGILMYRKPPPLLTRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS 212

[Close]

BLAST of Cla009511 vs. NCBI nr
Match: gi|659086607|ref|XP_008444023.1| (PREDICTED: ycf20-like protein [Cucumis melo])

HSP 1 Score: 224.2 bits (570), Expect = 1.2e-55
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 1


Query: 1   GRTRLGRLVSSGARQLLEKLNSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAG 60
           GRTRLGRLVSSGARQLLEKLNSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAG
Sbjct: 106 GRTRLGRLVSSGARQLLEKLNSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAG 165

Query: 61  VVVAAIEWIGILMYRKPPPLLTRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS 113
           VVVAAIEWIGILMYRKPPPLLTRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS
Sbjct: 166 VVVAAIEWIGILMYRKPPPLLTRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS 217

[Close]

BLAST of Cla009511 vs. NCBI nr
Match: gi|590637811|ref|XP_007029223.1| (Uncharacterized protein TCM_025117 [Theobroma cacao])

HSP 1 Score: 199.5 bits (506), Expect = 3.1e-48
Identity = 99/112 (88.39%), Postives = 106/112 (94.64%), Query Frame = 1


Query: 1   GRTRLGRLVSSGARQLLEKLNSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAG 60
           G TRLGR+VS+G+RQLLEKLNSARKNFP K+FLLLLGFYTANALATILGQTGDWDVLVAG
Sbjct: 98  GGTRLGRIVSAGSRQLLEKLNSARKNFPMKVFLLLLGFYTANALATILGQTGDWDVLVAG 157

Query: 61  VVVAAIEWIGILMYRKPPPLLTRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS 113
           VVVAAIE IG+LMYRKPP L T RL+SF+VMVNYWKAGVCLGLFVDAFKLGS
Sbjct: 158 VVVAAIEGIGMLMYRKPPSLKTGRLQSFVVMVNYWKAGVCLGLFVDAFKLGS 209

[Close]

BLAST of Cla009511 vs. NCBI nr
Match: gi|1009114571|ref|XP_015873760.1| (PREDICTED: ycf20-like protein isoform X1 [Ziziphus jujuba])

HSP 1 Score: 197.6 bits (501), Expect = 1.2e-47
Identity = 97/112 (86.61%), Postives = 106/112 (94.64%), Query Frame = 1


Query: 1   GRTRLGRLVSSGARQLLEKLNSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAG 60
           GRTRLGR+VS+G RQLLEKLNSARKNFP K+FLLLLGFYTANALATILGQTGDWDVLVAG
Sbjct: 96  GRTRLGRIVSAGGRQLLEKLNSARKNFPMKVFLLLLGFYTANALATILGQTGDWDVLVAG 155

Query: 61  VVVAAIEWIGILMYRKPPPLLTRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS 113
           VVVAAIE IG+LMYRKPP + + RL+SF+VM+NYWKAGVCLGLFVDAFKLGS
Sbjct: 156 VVVAAIEGIGMLMYRKPPYVPSERLQSFVVMMNYWKAGVCLGLFVDAFKLGS 207

[Close]

BLAST of Cla009511 vs. NCBI nr
Match: gi|720065475|ref|XP_010276283.1| (PREDICTED: ycf20-like protein isoform X2 [Nelumbo nucifera])

HSP 1 Score: 196.4 bits (498), Expect = 2.6e-47
Identity = 96/112 (85.71%), Postives = 105/112 (93.75%), Query Frame = 1


Query: 1   GRTRLGRLVSSGARQLLEKLNSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAG 60
           G+TRLGR+V++G RQLLEKLN+AR+NFP K+FLLLLGFYTANALATILGQTGDWDVLVAG
Sbjct: 79  GQTRLGRIVTAGGRQLLEKLNAARRNFPMKVFLLLLGFYTANALATILGQTGDWDVLVAG 138

Query: 61  VVVAAIEWIGILMYRKPPPLLTRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS 113
           VVVAAIE IG+LMYR PP L T RLKSF+VMVNYWKAGVCLGLFVDAFKLGS
Sbjct: 139 VVVAAIEGIGMLMYRNPPSLSTGRLKSFVVMVNYWKAGVCLGLFVDAFKLGS 190

The following BLAST results are available for this feature:

BLAST of Cla009511 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YC20L_ARATH	5.1e-43	76.11	Ycf20-like protein OS=Arabidopsis thaliana GN=At1g65420 PE=2 SV=2	[more]
YCF20_MESVI	3.0e-19	49.57	Uncharacterized protein ycf20 OS=Mesostigma viride GN=ycf20 PE=3 SV=1	[more]
YCF20_PORPU	7.1e-13	38.74	Uncharacterized protein ycf20 OS=Porphyra purpurea GN=ycf20 PE=3 SV=1	[more]
YCF20_PYRYE	7.1e-13	38.74	Uncharacterized protein ycf20 OS=Pyropia yezoensis GN=ycf20 PE=3 SV=1	[more]
YCF20_GALSU	4.0e-08	38.46	Uncharacterized protein ycf20 OS=Galdieria sulphuraria GN=ycf20 PE=3 SV=1	[more]

BLAST of Cla009511 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXR2_CUCSA	8.1e-56	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G652280 PE=4 SV=1	[more]
A0A061EXE3_THECC	2.1e-48	88.39	Uncharacterized protein OS=Theobroma cacao GN=TCM_025117 PE=4 SV=1	[more]
A0A067JSH3_JATCU	6.9e-47	86.61	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18069 PE=4 SV=1	[more]
A0A0D2NYF7_GOSRA	9.0e-47	87.50	Uncharacterized protein OS=Gossypium raimondii GN=B456_003G088400 PE=4 SV=1	[more]
A0A0D2QQF2_GOSRA	9.0e-47	87.50	Uncharacterized protein OS=Gossypium raimondii GN=B456_003G088400 PE=4 SV=1	[more]

BLAST of Cla009511 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449442657\|ref\|XP_004139097.1\|	1.2e-55	100.00	PREDICTED: ycf20-like protein [Cucumis sativus]	[more]
gi\|659086607\|ref\|XP_008444023.1\|	1.2e-55	100.00	PREDICTED: ycf20-like protein [Cucumis melo]	[more]
gi\|590637811\|ref\|XP_007029223.1\|	3.1e-48	88.39	Uncharacterized protein TCM_025117 [Theobroma cacao]	[more]
gi\|1009114571\|ref\|XP_015873760.1\|	1.2e-47	86.61	PREDICTED: ycf20-like protein isoform X1 [Ziziphus jujuba]	[more]
gi\|720065475\|ref\|XP_010276283.1\|	2.6e-47	85.71	PREDICTED: ycf20-like protein isoform X2 [Nelumbo nucifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007572	Uncharacterised_Ycf20

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010196	nonphotochemical quenching
biological_process	GO:0008150	biological_process
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla009511	Cla009511.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007572	Uncharacterised protein family Ycf20	PFAM	PF04483	DUF565	coord: 50..112 score: 3.2
None	No IPR available	PANTHER	PTHR33787	FAMILY NOT NAMED	coord: 1..112 score: 3.1
None	No IPR available	PANTHER	PTHR33787:SF4	YCF20-LIKE PROTEIN	coord: 1..112 score: 3.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla009511	Cla97C03G061050	Watermelon (97103) v2	wmwmbB126
Cla009511	Csa1G652280	Cucumber (Chinese Long) v2	cuwmB011
Cla009511	MELO3C010023	Melon (DHL92) v3.5.1	mewmB263
Cla009511	ClCG03G010340	Watermelon (Charleston Gray)	wcgwmB225
Cla009511	CSPI01G32020	Wild cucumber (PI 183967)	cpiwmB013
Cla009511	Cucsa.356420	Cucumber (Gy14) v1	cgywmB638
Cla009511	CmaCh11G009250	Cucurbita maxima (Rimu)	cmawmB093
Cla009511	CmoCh11G009470	Cucurbita moschata (Rifu)	cmowmB084
Cla009511	Lsi06G006760	Bottle gourd (USVL1VR-Ls)	lsiwmB391
Cla009511	Cp4.1LG00g01450	Cucurbita pepo (Zucchini)	cpewmB006
Cla009511	CsGy1G031030	Cucumber (Gy14) v2	cgybwmB013
Cla009511	MELO3C010023.2	Melon (DHL92) v3.6.1	medwmB254
Cla009511	Carg22715	Silver-seed gourd	carwmB0531
Cla009511	CsaV3_1G044300	Cucumber (Chinese Long) v3	cucwmB016
Cla009511	Bhi02G001108	Wax gourd	wgowmB661

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla009511	Silver-seed gourd	carwmB0970
Cla009511	Cucurbita maxima (Rimu)	cmawmB051
Cla009511	Cucurbita moschata (Rifu)	cmowmB043
Cla009511	Cucurbita pepo (Zucchini)	cpewmB350