CmaCh11G009250 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh11G009250
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Ycf20-like protein
Location	Cma_Chr11 : 4840788 .. 4843193 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCTATGATTATGCAGTCCAGATTATTGACAATAGCGAATTATATCTCCAAAGGATTATGTCTTACTTATATGCCTTGCCTAATCCATAACATGGACTATGTGGCTATCCTTAATGGACACAATTCAACTCTTTGCTTGAAGTCTGCACCTTTTCCTCGCAAAAGGTAGATGTGGAATTTATAAACTTTTATCACGTGTTGTTAAGAGACCTGTGCTATTCTTCTTGCATATATTTCCATTTTAGCTGGAGAATTATAGGTCCATAAGATCATGTCTTAATAGTATTGGATGAATGCTAATTTTGTTGAGCACAGAAGTTAAGCTGGAGAGGAATAGATAAGTAGCACGTCTAGGGAGGTTGAGAAATCTTGGGAGGGGATTTGGGGAGGTTGCTAGATTTAATGCATCTTGTGAGTGTCCATTCTTTTTTAATTACTAGTTTGTTCTCTTTCTTTTGGATTGAAGTCTCTTTCTGTAGTTAATGTTAAGTCTCCTTTTGCGGGCTCATTTTTTGTATGTCCTCGTACATTCTTTCACTTTTATATATAAAAGTTTTTTTTTTCTTTTCTTATTTATAAGAAGAAAAGTAAACTCCGTATCGTTTGTGATGTTATTTTTTACAGTTTCCGGACGAGTAGACATCTACAACAATTAGCCTTTGCATTAGACACAGGTGGGGTATCTAGTAACGGTGGGGGAGACAACCTTGATGATGGTAATGAGTCGAATCTGGGTCGTACTCGATTAGGCAGGCTAGTTAGTGCAGGTGCCAGACAGTTGCTGGAAAAACTAAACTCAGCTAGAAAGAACTTTCCTACAAAAATATTTTTGCTTCTTTTGGGTTTCTATACAGCCAATGCTCTTGCTACAATTCTTGGGCAGACGGGTGACTGGGATGTTTTGGTTGCTGGTGTGGTGGTTGCTGCCATTGAATGGATTGGTATACTCATGTACAAGAAGCCACCACCTCTATTAACTAGGAGGTTGAAATCATTAATAGTACTGATAAACTATTGGAAAGCCGGCGTATGCTTAGGCCTCTTCGTCGATGCGTTCAAGTTGGGGAGTTGAAAGATGTTGCTTCCTGATTTGAAATAGAACAAAAGGTAGTTCTGTTTATCTTAGAGGAAAGTTATTTTTGTACGAGGCACGAGTTCTTATTCCATCTTGTGTTACTTCTGTAACTGTATAATCTTATAGATACCTATTATAGGATGTTTCTGTACTATGATCTTCTGCTATCTTCGCATTTTTAGTAAGAAATTTTAGTAATTAATGCTTTTACTATTTAGAATGGGGAAAAGATGCTGCCTGCTTCCATAATCGTTCCTCCAGTTTGGACCACGGGAATCATTGAATAAACGAAGTTGGTTTCCAACTGTGAAACGGAAAGCCTTTAGTGACAATCTCATGAAAAGAAATGACAATAGCAGCCTTTTTTCTGTCACCCAACCCAACAACATTATAGGGAATGTTTGAATTTGGTTTGTTGCTGTTCAAATATTTGGTCTTCCCACCCTCCTCTTCATCCATTACCTACTTCCTGACCCGATATGCAACTAGAGAAGATTTACAATGAAAATATAGGCGGAGTAGGGATGAAGATGGTTGGCAATGGCAATGAAGTTGGGCATTTCAGATGTAGAATGTATTTTGGATTTGAAATAAGTTGTTGATAGATGAACAGAGCCCATCGCTTTCTATTTTCTGTTTAAGAGAGGCAGGTGCTGCTCAAATCTCCTAATTTACCAGTTGCTATTGAATATTATACTTGCTTATACAGGGAAAAGTAGAGAGAAAGAAAGCAAAACAGGAAGAAGAAAGGTCATCTTAGCCAGGAGGATCTGAGAGCTCTCCAAACGTTCCTCTACAATAGGCTCCAACTTTGGAGGAATTGAAGGCTTTTGATGGGCAATCAAGGGAGCTGGAGCTGCTTCAATCCAGGTTTTTCTGTAAACCTCCATATTCTCACCATCTGAACAAAACCCTTTTGAGATTTGGGATGTGAATGGTTATATAGAACTGTTGAGACAAATAAATGAATGAGTTGGTTATAGAGAAGAATGGTTCTGTTTATATATTCATTATAAGAAAGGAAGGTTCTAGGTTAAAAATAGGAGGCTATGATTGTCTTGGGGGAGAATATTGGTGGTGGACATGAAGGCCAGGTGAGAATCTTTGCAAAGTTGAAAGGATTTGAAAGTAATTCGTGTGGCTCTAAAGTTAAATTTAGTTATGTTCGGGATAACAGACCATTTCCATAATGTATTTGATTCATTTTTCTGGAATTCCTTTGTTTGGTTCGGGTTATAAAAGGAAAATGACACTAAAAATAGAAGATTACTTTATTTTTGTTCTCTCTTTTAAAACCAAGATTTCGTTACCCAAAAGAAGTTGGAA

mRNA sequence

ATGGAAGCTATGATTATGCAGTCCAGATTATTGACAATAGCGAATTATATCTCCAAAGGATTATGTCTTACTTATATGCCTTGCCTAATCCATAACATGGACTATGTGGCTATCCTTAATGGACACAATTCAACTCTTTGCTTGAAGTCTGCACCTTTTCCTCGCAAAAGTTTCCGGACGAGTAGACATCTACAACAATTAGCCTTTGCATTAGACACAGGTGGGGTATCTAGTAACGGTGGGGGAGACAACCTTGATGATGGTAATGAGTCGAATCTGGGTCGTACTCGATTAGGCAGGCTAGTTAGTGCAGGTGCCAGACAGTTGCTGGAAAAACTAAACTCAGCTAGAAAGAACTTTCCTACAAAAATATTTTTGCTTCTTTTGGGTTTCTATACAGCCAATGCTCTTGCTACAATTCTTGGGCAGACGGGTGACTGGGATGTTTTGGTTGCTGGTGTGGTGGTTGCTGCCATTGAATGGATTGGTATACTCATGTACAAGAAGCCACCACCTCTATTAACTAGGAGGTTGAAATCATTAATAGTACTGATAAACTATTGGAAAGCCGGCGTATGCTTAGGCCTCTTCGTCGATGCGTTCAAGTTGGGGAGTTGAAAGATGTTGCTTCCTGATTTGAAATAGAACAAAAGAATGGGGAAAAGATGCTGCCTGCTTCCATAATCGTTCCTCCAGTTTGGACCACGGGAATCATTGAATAAACGAAGTTGGTTTCCAACTGTGAAACGGAAAGCCTTTAGTGACAATCTCATGAAAAGAAATGACAATAGCAGCCTTTTTTCTGTCACCCAACCCAACAACATTATAGGGAATGTTTGAATTTGGTTTGTTGCTGTTCAAATATTTGGTCTTCCCACCCTCCTCTTCATCCATTACCTACTTCCTGACCCGATATGCAACTAGAGAAGATTTACAATGAAAATATAGGCGGAGTAGGGATGAAGATGGTTGGCAATGGCAATGAAGTTGGGCATTTCAGATGTAGAATGTATTTTGGATTTGAAATAAGTTGTTGATAGATGAACAGAGCCCATCGCTTTCTATTTTCTGTTTAAGAGAGGCAGGTGCTGCTCAAATCTCCTAATTTACCAGTTGCTATTGAATATTATACTTGCTTATACAGGGAAAAGTAGAGAGAAAGAAAGCAAAACAGGAAGAAGAAAGGTCATCTTAGCCAGGAGGATCTGAGAGCTCTCCAAACGTTCCTCTACAATAGGCTCCAACTTTGGAGGAATTGAAGGCTTTTGATGGGCAATCAAGGGAGCTGGAGCTGCTTCAATCCAGGTTTTTCTGTAAACCTCCATATTCTCACCATCTGAACAAAACCCTTTTGAGATTTGGGATGTGAATGGTTATATAGAACTGTTGAGACAAATAAATGAATGAGTTGGTTATAGAGAAGAATGGTTCTGTTTATATATTCATTATAAGAAAGGAAGGTTCTAGGTTAAAAATAGGAGGCTATGATTGTCTTGGGGGAGAATATTGGTGGTGGACATGAAGGCCAGGTGAGAATCTTTGCAAAGTTGAAAGGATTTGAAAGTAATTCGTGTGGCTCTAAAGTTAAATTTAGTTATGTTCGGGATAACAGACCATTTCCATAATGTATTTGATTCATTTTTCTGGAATTCCTTTGTTTGGTTCGGGTTATAAAAGGAAAATGACACTAAAAATAGAAGATTACTTTATTTTTGTTCTCTCTTTTAAAACCAAGATTTCGTTACCCAAAAGAAGTTGGAA

Coding sequence (CDS)

ATGGAAGCTATGATTATGCAGTCCAGATTATTGACAATAGCGAATTATATCTCCAAAGGATTATGTCTTACTTATATGCCTTGCCTAATCCATAACATGGACTATGTGGCTATCCTTAATGGACACAATTCAACTCTTTGCTTGAAGTCTGCACCTTTTCCTCGCAAAAGTTTCCGGACGAGTAGACATCTACAACAATTAGCCTTTGCATTAGACACAGGTGGGGTATCTAGTAACGGTGGGGGAGACAACCTTGATGATGGTAATGAGTCGAATCTGGGTCGTACTCGATTAGGCAGGCTAGTTAGTGCAGGTGCCAGACAGTTGCTGGAAAAACTAAACTCAGCTAGAAAGAACTTTCCTACAAAAATATTTTTGCTTCTTTTGGGTTTCTATACAGCCAATGCTCTTGCTACAATTCTTGGGCAGACGGGTGACTGGGATGTTTTGGTTGCTGGTGTGGTGGTTGCTGCCATTGAATGGATTGGTATACTCATGTACAAGAAGCCACCACCTCTATTAACTAGGAGGTTGAAATCATTAATAGTACTGATAAACTATTGGAAAGCCGGCGTATGCTTAGGCCTCTTCGTCGATGCGTTCAAGTTGGGGAGTTGA

Protein sequence

MEAMIMQSRLLTIANYISKGLCLTYMPCLIHNMDYVAILNGHNSTLCLKSAPFPRKSFRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS

Homology

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BLAST of CmaCh11G009250 vs. Swiss-Prot
Match: YC20L_ARATH (Ycf20-like protein OS=Arabidopsis thaliana GN=At1g65420 PE=2 SV=2)

HSP 1 Score: 202.2 bits (513), Expect = 5.4e-51
Identity = 106/164 (64.63%), Postives = 130/164 (79.27%), Query Frame = 1


Query: 44  STLCLKSAPFPRKSFRTSRHLQQLAFALDTGGVSSNGGGDNLD-DGNESNLGRTRLGRLV 103
           S++ L S P+P KSF+  R  +++AFALDTG       G+  + +G+ + LG TRLGR+ 
Sbjct: 34  SSITLTSFPYPMKSFQIRRPNRKIAFALDTGSSIPGDSGEGQEMNGDRTGLGSTRLGRIA 93

Query: 104 SAGARQLLEKLNSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWI 163
            AG +QLL K+NSARKNFP KIFLLLLGFYTANALATILGQTGDWDVLVAG+VVAAIE I
Sbjct: 94  IAGGKQLLGKINSARKNFPMKIFLLLLGFYTANALATILGQTGDWDVLVAGIVVAAIEGI 153

Query: 164 GILMYKKP-PPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS 206
           G+LMYKKP   + + +L+S +V +N+WKAGVCLGLFVDAFKLGS
Sbjct: 154 GMLMYKKPSSSMFSGKLQSFVVFMNFWKAGVCLGLFVDAFKLGS 197

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BLAST of CmaCh11G009250 vs. Swiss-Prot
Match: YCF20_MESVI (Uncharacterized protein ycf20 OS=Mesostigma viride GN=ycf20 PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.2e-18
Identity = 58/103 (56.31%), Postives = 68/103 (66.02%), Query Frame = 1


Query: 108 QLLE-KLNSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILM 167
           QLL+ K+ +   NFP KI LLLLGF+ A  LAT+ GQTGDWDVLVAG++VA IE +G  M
Sbjct: 15  QLLDSKIQNYSINFPIKILLLLLGFFIATVLATVFGQTGDWDVLVAGILVAMIEILGNKM 74

Query: 168 YKK----PPPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS 206
           Y K       +      SLI  INY K G+  GLFVDAFKLGS
Sbjct: 75  YSKKYISKKQVFDISFLSLIG-INYIKIGLIFGLFVDAFKLGS 116

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BLAST of CmaCh11G009250 vs. Swiss-Prot
Match: YCF20_PYRYE (Uncharacterized protein ycf20 OS=Pyropia yezoensis GN=ycf20 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.0e-12
Identity = 44/111 (39.64%), Postives = 62/111 (55.86%), Query Frame = 1


Query: 95  RTRLGRLVSAGARQLLEKLNSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGV 154
           +TRL    +   + L  KL  +     T +  LLLGF+ +  L+TI GQTGDW ++ A +
Sbjct: 3   KTRLSTFFAYLIKNLNNKLYYSLSELTTGLISLLLGFFISTGLSTIPGQTGDWGIIAASL 62

Query: 155 VVAAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS 206
           +VAA E    ++Y        ++L   I L N +K G+  GLFVDAFKLGS
Sbjct: 63  IVAATELTSKIVYSS-----HKQLNIKINLFNNFKIGITYGLFVDAFKLGS 108

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BLAST of CmaCh11G009250 vs. Swiss-Prot
Match: YCF20_PORPU (Uncharacterized protein ycf20 OS=Porphyra purpurea GN=ycf20 PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.7e-12
Identity = 44/111 (39.64%), Postives = 61/111 (54.95%), Query Frame = 1


Query: 95  RTRLGRLVSAGARQLLEKLNSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGV 154
           RT+L    S   + L  +L  +       +  LLLGF+ +  L+TI GQTGDW ++ A +
Sbjct: 3   RTKLSIFFSYFVQNLSSRLYYSLNELTAGLISLLLGFFISTGLSTIPGQTGDWGIIAASL 62

Query: 155 VVAAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS 206
           +VAAIE +  ++Y        R     I L+N  K G+  GLFVDAFKLGS
Sbjct: 63  IVAAIELVSKIVYSNKKKYGVR-----INLLNNLKIGITYGLFVDAFKLGS 108

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BLAST of CmaCh11G009250 vs. Swiss-Prot
Match: YCF20_GALSU (Uncharacterized protein ycf20 OS=Galdieria sulphuraria GN=ycf20 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.3e-07
Identity = 30/78 (38.46%), Postives = 47/78 (60.26%), Query Frame = 1


Query: 128 LLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKSLIVLINY 187
           LLG +++N L TI  QTGDW + +   ++A  E I  + Y +    + +  K++I   N 
Sbjct: 9   LLGIFSSNLLCTIYTQTGDWSLYLTSCIIALYEIISYISYNQ---FIKKTHKNIINCFNG 68

Query: 188 WKAGVCLGLFVDAFKLGS 206
           +K G+  GL++DAFKLGS
Sbjct: 69  FKIGLIYGLYLDAFKLGS 83

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BLAST of CmaCh11G009250 vs. TrEMBL
Match: A0A0A0LXR2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G652280 PE=4 SV=1)

HSP 1 Score: 337.8 bits (865), Expect = 9.2e-90
Identity = 171/205 (83.41%), Postives = 186/205 (90.73%), Query Frame = 1


Query: 1   MEAMIMQSRLLTIANYISKGLCLTYMPCLIHNMDYVAILNGHNSTLCLKSAPFPRKSFRT 60
           M A+I+ SRLLT ANY  +  CLT MPCLIH   Y AI NG +S+  LKSAPFPRKS +T
Sbjct: 8   MGAVILHSRLLTTANYSPQVSCLTNMPCLIHYWGYEAIFNGRSSSFLLKSAPFPRKSLQT 67

Query: 61  SRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSARKNF 120
           SRH+ +LAFALDTGGVSS+GGGDN+DDG+ESNLGRTRLGRLVS+GARQLLEKLNSARKNF
Sbjct: 68  SRHVNKLAFALDTGGVSSSGGGDNIDDGDESNLGRTRLGRLVSSGARQLLEKLNSARKNF 127

Query: 121 PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKS 180
           PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMY+KPPPLLTRRLKS
Sbjct: 128 PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTRRLKS 187

Query: 181 LIVLINYWKAGVCLGLFVDAFKLGS 206
            IV++NYWKAGVCLGLFVDAFKLGS
Sbjct: 188 FIVMVNYWKAGVCLGLFVDAFKLGS 212

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BLAST of CmaCh11G009250 vs. TrEMBL
Match: A0A061EXE3_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_025117 PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 1.9e-63
Identity = 135/203 (66.50%), Postives = 159/203 (78.33%), Query Frame = 1


Query: 4   MIMQSRLLTIANYISKGLCLTYMPCLIHNMDYVAILNGHNSTLCLKSAPFPRKSFRT-SR 63
           M +Q+ L  + N + +  C+T   C I        + G  S + LKSA FP+KSF T  R
Sbjct: 8   MYLQAGLSILENEVLESSCMTLATCAIQRWIIEPSICGQASKIGLKSALFPKKSFSTRKR 67

Query: 64  HLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSARKNFPT 123
           H  ++AFALDTGGVS +GG D+L+  + SNLG TRLGR+VSAG+RQLLEKLNSARKNFP 
Sbjct: 68  HGWKIAFALDTGGVSGDGGEDSLNS-DSSNLGGTRLGRIVSAGSRQLLEKLNSARKNFPM 127

Query: 124 KIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKSLI 183
           K+FLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIE IG+LMY+KPP L T RL+S +
Sbjct: 128 KVFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEGIGMLMYRKPPSLKTGRLQSFV 187

Query: 184 VLINYWKAGVCLGLFVDAFKLGS 206
           V++NYWKAGVCLGLFVDAFKLGS
Sbjct: 188 VMVNYWKAGVCLGLFVDAFKLGS 209

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BLAST of CmaCh11G009250 vs. TrEMBL
Match: D7U6I2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0207g00110 PE=4 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 2.4e-61
Identity = 135/206 (65.53%), Postives = 158/206 (76.70%), Query Frame = 1


Query: 1   MEAMIMQSRLLTIANYISKGLCLTYMPCL-IHNMDYVAILNGHNSTLCLKSAPFPRKSFR 60
           M  +++QS L    +  S    +T+  C  I N +     +G  S L +KSAPFPRKSF+
Sbjct: 21  MGGIMLQSTLSVPESESSDCSYITFTTCCTIQNWNNEPSFSGQISKLGMKSAPFPRKSFQ 80

Query: 61  TSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSARKN 120
           T RH  + AFALDTGG+  NGG +NL+ GN  +LG+TRLGR+VSAG RQLL KLNSARKN
Sbjct: 81  TRRHGWKTAFALDTGGIPDNGGQENLN-GNGPDLGQTRLGRIVSAGGRQLLAKLNSARKN 140

Query: 121 FPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLK 180
           FP K+FLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIE IG+L+YKK     T RL+
Sbjct: 141 FPMKVFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEGIGMLVYKKSSSQSTGRLQ 200

Query: 181 SLIVLINYWKAGVCLGLFVDAFKLGS 206
           SL+V+INYWKAGVCLGLFVDAFKLGS
Sbjct: 201 SLVVMINYWKAGVCLGLFVDAFKLGS 225

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BLAST of CmaCh11G009250 vs. TrEMBL
Match: A0A067JSH3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18069 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 5.3e-61
Identity = 127/205 (61.95%), Postives = 156/205 (76.10%), Query Frame = 1


Query: 1   MEAMIMQSRLLTIANYISKGLCLTYMPCLIHNMDYVAILNGHNSTLCLKSAPFPRKSFRT 60
           +E  +++S LL +   +SK  C+ +  C + N       +G  S + +   PF ++ F+ 
Sbjct: 5   LEFRMLRSGLLAMETEVSKRSCINHATCAMQNWSVAPNFSGQTSKIGVNFPPFLKQRFQL 64

Query: 61  SRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSARKNF 120
            R   ++ FALDTGG++ NGG +NLD G+ S LG TRLGR+VSAG+RQLL+KLNSARKNF
Sbjct: 65  RRCDWRIPFALDTGGIAGNGGPENLD-GDSSGLGGTRLGRIVSAGSRQLLQKLNSARKNF 124

Query: 121 PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKS 180
           P KIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIE IG+LMYKKP  L T RL+S
Sbjct: 125 PMKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEGIGMLMYKKPTSLSTGRLQS 184

Query: 181 LIVLINYWKAGVCLGLFVDAFKLGS 206
            +V++NYWKAGVCLGLFVDAFKLGS
Sbjct: 185 FVVMVNYWKAGVCLGLFVDAFKLGS 208

[Close]

BLAST of CmaCh11G009250 vs. TrEMBL
Match: B9HHY4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s07660g PE=4 SV=2)

HSP 1 Score: 240.7 bits (613), Expect = 1.5e-60
Identity = 125/203 (61.58%), Postives = 152/203 (74.88%), Query Frame = 1


Query: 3   AMIMQSRLLTIANYISKGLCLTYMPCLIHNMDYVAILNGHNSTLCLKSAPFPRKSFRTSR 62
           A ++QS L  + N +S+  C+T   C + N +     +G  S + +K  PF +  F+  R
Sbjct: 7   ARMLQSGLSVMVNEVSERTCITIATCAMQNRNSEPSFSGQASKIGIKFVPFQKTRFQLRR 66

Query: 63  HLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSARKNFPT 122
              ++AFALDTGG+  NGG +N++  +   LG TRLGR+VSAG RQLLEKLNSARKNFP 
Sbjct: 67  QGWRIAFALDTGGLPGNGGQENVNGDSPPGLGGTRLGRIVSAGGRQLLEKLNSARKNFPM 126

Query: 123 KIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKSLI 182
           KIFLLLLGFYTANALATILGQTGDWDVLVAG+VVAAIE IG+LMYKKP  L TRRL+  +
Sbjct: 127 KIFLLLLGFYTANALATILGQTGDWDVLVAGIVVAAIEGIGMLMYKKPSSLSTRRLQYFV 186

Query: 183 VLINYWKAGVCLGLFVDAFKLGS 206
            ++NYWKAGVCLGLFVDAFKLGS
Sbjct: 187 AMMNYWKAGVCLGLFVDAFKLGS 209

[Close]

BLAST of CmaCh11G009250 vs. TAIR10
Match: AT1G65420.1 (AT1G65420.1 Protein of unknown function (DUF565))

HSP 1 Score: 202.2 bits (513), Expect = 3.1e-52
Identity = 106/164 (64.63%), Postives = 130/164 (79.27%), Query Frame = 1


Query: 44  STLCLKSAPFPRKSFRTSRHLQQLAFALDTGGVSSNGGGDNLD-DGNESNLGRTRLGRLV 103
           S++ L S P+P KSF+  R  +++AFALDTG       G+  + +G+ + LG TRLGR+ 
Sbjct: 34  SSITLTSFPYPMKSFQIRRPNRKIAFALDTGSSIPGDSGEGQEMNGDRTGLGSTRLGRIA 93

Query: 104 SAGARQLLEKLNSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWI 163
            AG +QLL K+NSARKNFP KIFLLLLGFYTANALATILGQTGDWDVLVAG+VVAAIE I
Sbjct: 94  IAGGKQLLGKINSARKNFPMKIFLLLLGFYTANALATILGQTGDWDVLVAGIVVAAIEGI 153

Query: 164 GILMYKKP-PPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS 206
           G+LMYKKP   + + +L+S +V +N+WKAGVCLGLFVDAFKLGS
Sbjct: 154 GMLMYKKPSSSMFSGKLQSFVVFMNFWKAGVCLGLFVDAFKLGS 197

[Close]

BLAST of CmaCh11G009250 vs. TAIR10
Match: AT3G56830.1 (AT3G56830.1 Protein of unknown function (DUF565))

HSP 1 Score: 111.7 bits (278), Expect = 5.4e-25
Identity = 59/145 (40.69%), Postives = 91/145 (62.76%), Query Frame = 1


Query: 62  RHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRT----RLGRLVSAGARQLLEKLNSAR 121
           RH +++++      + S+ GGD  D  + S+   +    RL + +     +LL K+   +
Sbjct: 48  RHQRRMSWTT----IKSSVGGDRFDPASGSSSNNSSRGLRLIKAIQVLRSKLLVKIQEIK 107

Query: 122 KNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRR 181
           K+ P K+F LL+GFY+A A +T +GQTGDWDVL AG+ V  +E IG LMY+   PL+  +
Sbjct: 108 KDLPKKLFFLLVGFYSATAFSTFIGQTGDWDVLSAGLAVLVVECIGALMYRASIPLI-NK 167

Query: 182 LKSLIVLINYWKAGVCLGLFVDAFK 203
           ++S I + NYWK G+ LGLF+D+FK
Sbjct: 168 MRSTITMFNYWKTGLALGLFLDSFK 187

[Close]

BLAST of CmaCh11G009250 vs. NCBI nr
Match: gi|449442657|ref|XP_004139097.1| (PREDICTED: ycf20-like protein [Cucumis sativus])

HSP 1 Score: 337.8 bits (865), Expect = 1.3e-89
Identity = 171/205 (83.41%), Postives = 186/205 (90.73%), Query Frame = 1


Query: 1   MEAMIMQSRLLTIANYISKGLCLTYMPCLIHNMDYVAILNGHNSTLCLKSAPFPRKSFRT 60
           M A+I+ SRLLT ANY  +  CLT MPCLIH   Y AI NG +S+  LKSAPFPRKS +T
Sbjct: 8   MGAVILHSRLLTTANYSPQVSCLTNMPCLIHYWGYEAIFNGRSSSFLLKSAPFPRKSLQT 67

Query: 61  SRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSARKNF 120
           SRH+ +LAFALDTGGVSS+GGGDN+DDG+ESNLGRTRLGRLVS+GARQLLEKLNSARKNF
Sbjct: 68  SRHVNKLAFALDTGGVSSSGGGDNIDDGDESNLGRTRLGRLVSSGARQLLEKLNSARKNF 127

Query: 121 PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKS 180
           PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMY+KPPPLLTRRLKS
Sbjct: 128 PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTRRLKS 187

Query: 181 LIVLINYWKAGVCLGLFVDAFKLGS 206
            IV++NYWKAGVCLGLFVDAFKLGS
Sbjct: 188 FIVMVNYWKAGVCLGLFVDAFKLGS 212

[Close]

BLAST of CmaCh11G009250 vs. NCBI nr
Match: gi|659086607|ref|XP_008444023.1| (PREDICTED: ycf20-like protein [Cucumis melo])

HSP 1 Score: 273.9 bits (699), Expect = 2.3e-70
Identity = 136/151 (90.07%), Postives = 147/151 (97.35%), Query Frame = 1


Query: 55  RKSFRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLN 114
           R  F+TSRH+ ++AFALDTGGVSS+GGGDN+DDG+ESNLGRTRLGRLVS+GARQLLEKLN
Sbjct: 67  RCGFQTSRHVNKIAFALDTGGVSSSGGGDNVDDGDESNLGRTRLGRLVSSGARQLLEKLN 126

Query: 115 SARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLL 174
           SARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMY+KPPPLL
Sbjct: 127 SARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLL 186

Query: 175 TRRLKSLIVLINYWKAGVCLGLFVDAFKLGS 206
           TRRLKS IV++NYWKAGVCLGLFVDAFKLGS
Sbjct: 187 TRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS 217

[Close]

BLAST of CmaCh11G009250 vs. NCBI nr
Match: gi|590637811|ref|XP_007029223.1| (Uncharacterized protein TCM_025117 [Theobroma cacao])

HSP 1 Score: 250.4 bits (638), Expect = 2.8e-63
Identity = 135/203 (66.50%), Postives = 159/203 (78.33%), Query Frame = 1


Query: 4   MIMQSRLLTIANYISKGLCLTYMPCLIHNMDYVAILNGHNSTLCLKSAPFPRKSFRT-SR 63
           M +Q+ L  + N + +  C+T   C I        + G  S + LKSA FP+KSF T  R
Sbjct: 8   MYLQAGLSILENEVLESSCMTLATCAIQRWIIEPSICGQASKIGLKSALFPKKSFSTRKR 67

Query: 64  HLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSARKNFPT 123
           H  ++AFALDTGGVS +GG D+L+  + SNLG TRLGR+VSAG+RQLLEKLNSARKNFP 
Sbjct: 68  HGWKIAFALDTGGVSGDGGEDSLNS-DSSNLGGTRLGRIVSAGSRQLLEKLNSARKNFPM 127

Query: 124 KIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKSLI 183
           K+FLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIE IG+LMY+KPP L T RL+S +
Sbjct: 128 KVFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEGIGMLMYRKPPSLKTGRLQSFV 187

Query: 184 VLINYWKAGVCLGLFVDAFKLGS 206
           V++NYWKAGVCLGLFVDAFKLGS
Sbjct: 188 VMVNYWKAGVCLGLFVDAFKLGS 209

[Close]

BLAST of CmaCh11G009250 vs. NCBI nr
Match: gi|298205056|emb|CBI38352.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 243.4 bits (620), Expect = 3.4e-61
Identity = 135/206 (65.53%), Postives = 158/206 (76.70%), Query Frame = 1


Query: 1   MEAMIMQSRLLTIANYISKGLCLTYMPCL-IHNMDYVAILNGHNSTLCLKSAPFPRKSFR 60
           M  +++QS L    +  S    +T+  C  I N +     +G  S L +KSAPFPRKSF+
Sbjct: 21  MGGIMLQSTLSVPESESSDCSYITFTTCCTIQNWNNEPSFSGQISKLGMKSAPFPRKSFQ 80

Query: 61  TSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSARKN 120
           T RH  + AFALDTGG+  NGG +NL+ GN  +LG+TRLGR+VSAG RQLL KLNSARKN
Sbjct: 81  TRRHGWKTAFALDTGGIPDNGGQENLN-GNGPDLGQTRLGRIVSAGGRQLLAKLNSARKN 140

Query: 121 FPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLK 180
           FP K+FLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIE IG+L+YKK     T RL+
Sbjct: 141 FPMKVFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEGIGMLVYKKSSSQSTGRLQ 200

Query: 181 SLIVLINYWKAGVCLGLFVDAFKLGS 206
           SL+V+INYWKAGVCLGLFVDAFKLGS
Sbjct: 201 SLVVMINYWKAGVCLGLFVDAFKLGS 225

[Close]

BLAST of CmaCh11G009250 vs. NCBI nr
Match: gi|731440263|ref|XP_002267846.3| (PREDICTED: ycf20-like protein [Vitis vinifera])

HSP 1 Score: 243.4 bits (620), Expect = 3.4e-61
Identity = 135/206 (65.53%), Postives = 158/206 (76.70%), Query Frame = 1


Query: 1   MEAMIMQSRLLTIANYISKGLCLTYMPCL-IHNMDYVAILNGHNSTLCLKSAPFPRKSFR 60
           M  +++QS L    +  S    +T+  C  I N +     +G  S L +KSAPFPRKSF+
Sbjct: 5   MGGIMLQSTLSVPESESSDCSYITFTTCCTIQNWNNEPSFSGQISKLGMKSAPFPRKSFQ 64

Query: 61  TSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSARKN 120
           T RH  + AFALDTGG+  NGG +NL+ GN  +LG+TRLGR+VSAG RQLL KLNSARKN
Sbjct: 65  TRRHGWKTAFALDTGGIPDNGGQENLN-GNGPDLGQTRLGRIVSAGGRQLLAKLNSARKN 124

Query: 121 FPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLK 180
           FP K+FLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIE IG+L+YKK     T RL+
Sbjct: 125 FPMKVFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEGIGMLVYKKSSSQSTGRLQ 184

Query: 181 SLIVLINYWKAGVCLGLFVDAFKLGS 206
           SL+V+INYWKAGVCLGLFVDAFKLGS
Sbjct: 185 SLVVMINYWKAGVCLGLFVDAFKLGS 209

The following BLAST results are available for this feature:

BLAST of CmaCh11G009250 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YC20L_ARATH	5.4e-51	64.63	Ycf20-like protein OS=Arabidopsis thaliana GN=At1g65420 PE=2 SV=2	[more]
YCF20_MESVI	1.2e-18	56.31	Uncharacterized protein ycf20 OS=Mesostigma viride GN=ycf20 PE=3 SV=1	[more]
YCF20_PYRYE	1.0e-12	39.64	Uncharacterized protein ycf20 OS=Pyropia yezoensis GN=ycf20 PE=3 SV=1	[more]
YCF20_PORPU	1.7e-12	39.64	Uncharacterized protein ycf20 OS=Porphyra purpurea GN=ycf20 PE=3 SV=1	[more]
YCF20_GALSU	1.3e-07	38.46	Uncharacterized protein ycf20 OS=Galdieria sulphuraria GN=ycf20 PE=3 SV=1	[more]

BLAST of CmaCh11G009250 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXR2_CUCSA	9.2e-90	83.41	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G652280 PE=4 SV=1	[more]
A0A061EXE3_THECC	1.9e-63	66.50	Uncharacterized protein OS=Theobroma cacao GN=TCM_025117 PE=4 SV=1	[more]
D7U6I2_VITVI	2.4e-61	65.53	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0207g00110 PE=4 SV=...	[more]
A0A067JSH3_JATCU	5.3e-61	61.95	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18069 PE=4 SV=1	[more]
B9HHY4_POPTR	1.5e-60	61.58	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s07660g PE=4 SV=2	[more]

BLAST of CmaCh11G009250 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G65420.1	3.1e-52	64.63	Protein of unknown function (DUF565)	[more]
AT3G56830.1	5.4e-25	40.69	Protein of unknown function (DUF565)	[more]

BLAST of CmaCh11G009250 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449442657\|ref\|XP_004139097.1\|	1.3e-89	83.41	PREDICTED: ycf20-like protein [Cucumis sativus]	[more]
gi\|659086607\|ref\|XP_008444023.1\|	2.3e-70	90.07	PREDICTED: ycf20-like protein [Cucumis melo]	[more]
gi\|590637811\|ref\|XP_007029223.1\|	2.8e-63	66.50	Uncharacterized protein TCM_025117 [Theobroma cacao]	[more]
gi\|298205056\|emb\|CBI38352.3\|	3.4e-61	65.53	unnamed protein product [Vitis vinifera]	[more]
gi\|731440263\|ref\|XP_002267846.3\|	3.4e-61	65.53	PREDICTED: ycf20-like protein [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007572	Uncharacterised_Ycf20

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0010196	nonphotochemical quenching
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G009250.1	CmaCh11G009250.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007572	Uncharacterised protein family Ycf20	PFAM	PF04483	DUF565	coord: 143..205 score: 2.5
None	No IPR available	PANTHER	PTHR33787	FAMILY NOT NAMED	coord: 1..205 score: 2.1E
None	No IPR available	PANTHER	PTHR33787:SF4	YCF20-LIKE PROTEIN	coord: 1..205 score: 2.1E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh11G009250	Cucsa.356420	Cucumber (Gy14) v1	cgycmaB0970
CmaCh11G009250	Cla009511	Watermelon (97103) v1	cmawmB093
CmaCh11G009250	Csa1G652280	Cucumber (Chinese Long) v2	cmacuB085
CmaCh11G009250	MELO3C010023	Melon (DHL92) v3.5.1	cmameB107
CmaCh11G009250	ClCG03G010340	Watermelon (Charleston Gray)	cmawcgB108
CmaCh11G009250	CSPI01G32020	Wild cucumber (PI 183967)	cmacpiB084
CmaCh11G009250	CmoCh11G009470	Cucurbita moschata (Rifu)	cmacmoB112
CmaCh11G009250	Lsi06G006760	Bottle gourd (USVL1VR-Ls)	cmalsiB128
CmaCh11G009250	Cp4.1LG00g01450	Cucurbita pepo (Zucchini)	cmacpeB103
CmaCh11G009250	MELO3C010023.2	Melon (DHL92) v3.6.1	cmamedB114
CmaCh11G009250	CsaV3_1G044300	Cucumber (Chinese Long) v3	cmacucB0099
CmaCh11G009250	Cla97C03G061050	Watermelon (97103) v2	cmawmbB111
CmaCh11G009250	Bhi02G001108	Wax gourd	cmawgoB0169
CmaCh11G009250	CsGy1G031030	Cucumber (Gy14) v2	cgybcmaB027
CmaCh11G009250	Carg22715	Silver-seed gourd	carcmaB0749

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh11G009250	Wax gourd	cmawgoB0166
CmaCh11G009250	Cucurbita maxima (Rimu)	cmacmaB078
CmaCh11G009250	Cucurbita moschata (Rifu)	cmacmoB105
CmaCh11G009250	Cucurbita pepo (Zucchini)	cmacpeB126
CmaCh11G009250	Silver-seed gourd	carcmaB1336