CsaV3_1G044300 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G044300
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	ycf20-like protein
Location	chr1 : 29560199 .. 29561718 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGTGGGCATCTTCCAGATGGGTGCAGTAATTTTGCACTCCAGATTATTGACAACAGCGAATTATAGCCCTCAAGTATCATGTCTTACCAATATGCCCTGCCTAATCCACTACTGGGGCTATGAGGCTATCTTTAATGGACGCAGTTCAAGCTTTCTCCTGAAATCTGCACCATTTCCTCGAAAAAGGTACAAGTGGAGTTTTTAAACTTGTATCACGCCTTGTTAAGAGGCCTGCGCTATTTTTCTTGCGTATATTTCCATTTTAATTGTTGAATCCTTGGGTAATTAGATAACTGCTTATATTATATTGAGAACTAGAGAGGAATATTAGTTCTTAGAGAGATTGGAAGATCTTGGGTGGAGGTCAGAGCCGTCGCTAGGTTTAAAGCATCTGTGCGGGTGTATCCACTCTTTGTTTGTAATTACCAGCTTGGTTTCATTCTTTTGGATTGGTGTCGGCTCTTCTAATTATTGTTAGAATCAGTGTTTCAAAAGCCCGCTTGGAGGCGCACGCCTAGGCTCAAGGCTCAAGGCTCAAGTTTAGCGCCTTGGATTGAAAAAGCAAGCCTCATGAAATAAGGCATGCCTTAGGTGCACGCCTTTTGTGATGTCCCATGGCTCAAAGCCCTGGCCCTTGGGGCTTTTTCATTATTTCTAATAAAAGTAATAATTAGGGTTTTTTCCTTCTTTATTAACTAAAATGATTAAATTTAGTAAGCCCAAATGCAAAATTTGTTGTGTTTAGTGGGTTTCCGTTTCCTATATGTCCACTTTAACCATGCTTTCTCATGAATGTAGTATGTTTATATATAATGCGCCTCATTGAAGAACTATTGCGTTGAGCCCTAAAAACTATTGCGCTAAGCCCTAAAGAGTATTGCGTTTTCTTGTGGGTTGAGGTTTAAGAAACACTGGTTGGGACTTTGACTCCTTATGTCATGTGAAATTGTTCTTTTGTATCTTCTTGTGCATTCTTTCATTTTTCTCAACAAAAGCTCGGTTTCGTATGAAAGGAAGTTTATATATAAATGCTGTTATGAACCTGTTTGTGATGTTACTTGTTACAGTCTCCAGACGAGTAGACATGTCAATAAATTAGCCTTTGCATTAGATACAGGTGGGGTATCTAGTAGTGGTGGGGGAGACAACATCGACGATGGTGATGAGTCCAATCTGGGTCGTACTCGATTAGGCAGGCTAGTTAGTTCAGGTGCCAGACAGTTGCTGGAAAAACTGAACTCAGCGAGAAAAAACTTTCCTACAAAGATATTTTTGCTTCTTTTGGGTTTCTATACAGCAAATGCACTTGCTACAATTCTTGGACAGACGGGTGATTGGGATGTTTTGGTTGCTGGTGTGGTGGTTGCTGCTATAGAATGGATTGGTATACTCATGTACAGGAAGCCTCCACCTCTATTAACTAGGAGGCTGAAATCATTTATTGTAATGGTTAACTATTGGAAAGCTGGTGTGTGCTTGGGCCTCTTTGTCGATGCGTTCAAATTAGGGAGTTGA

mRNA sequence

ATGGAAGTGGGCATCTTCCAGATGGGTGCAGTAATTTTGCACTCCAGATTATTGACAACAGCGAATTATAGCCCTCAAGTATCATGTCTTACCAATATGCCCTGCCTAATCCACTACTGGGGCTATGAGGCTATCTTTAATGGACGCAGTTCAAGCTTTCTCCTGAAATCTGCACCATTTCCTCGAAAAAGTCTCCAGACGAGTAGACATGTCAATAAATTAGCCTTTGCATTAGATACAGGTGGGGTATCTAGTAGTGGTGGGGGAGACAACATCGACGATGGTGATGAGTCCAATCTGGGTCGTACTCGATTAGGCAGGCTAGTTAGTTCAGGTGCCAGACAGTTGCTGGAAAAACTGAACTCAGCGAGAAAAAACTTTCCTACAAAGATATTTTTGCTTCTTTTGGGTTTCTATACAGCAAATGCACTTGCTACAATTCTTGGACAGACGGGTGATTGGGATGTTTTGGTTGCTGGTGTGGTGGTTGCTGCTATAGAATGGATTGGTATACTCATGTACAGGAAGCCTCCACCTCTATTAACTAGGAGGCTGAAATCATTTATTGTAATGGTTAACTATTGGAAAGCTGGTGTGTGCTTGGGCCTCTTTGTCGATGCGTTCAAATTAGGGAGTTGA

Coding sequence (CDS)

ATGGAAGTGGGCATCTTCCAGATGGGTGCAGTAATTTTGCACTCCAGATTATTGACAACAGCGAATTATAGCCCTCAAGTATCATGTCTTACCAATATGCCCTGCCTAATCCACTACTGGGGCTATGAGGCTATCTTTAATGGACGCAGTTCAAGCTTTCTCCTGAAATCTGCACCATTTCCTCGAAAAAGTCTCCAGACGAGTAGACATGTCAATAAATTAGCCTTTGCATTAGATACAGGTGGGGTATCTAGTAGTGGTGGGGGAGACAACATCGACGATGGTGATGAGTCCAATCTGGGTCGTACTCGATTAGGCAGGCTAGTTAGTTCAGGTGCCAGACAGTTGCTGGAAAAACTGAACTCAGCGAGAAAAAACTTTCCTACAAAGATATTTTTGCTTCTTTTGGGTTTCTATACAGCAAATGCACTTGCTACAATTCTTGGACAGACGGGTGATTGGGATGTTTTGGTTGCTGGTGTGGTGGTTGCTGCTATAGAATGGATTGGTATACTCATGTACAGGAAGCCTCCACCTCTATTAACTAGGAGGCTGAAATCATTTATTGTAATGGTTAACTATTGGAAAGCTGGTGTGTGCTTGGGCCTCTTTGTCGATGCGTTCAAATTAGGGAGTTGA

Protein sequence

MEVGIFQMGAVILHSRLLTTANYSPQVSCLTNMPCLIHYWGYEAIFNGRSSSFLLKSAPFPRKSLQTSRHVNKLAFALDTGGVSSSGGGDNIDDGDESNLGRTRLGRLVSSGARQLLEKLNSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS

Homology

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BLAST of CsaV3_1G044300 vs. NCBI nr
Match: XP_004139097.1 (PREDICTED: ycf20-like protein [Cucumis sativus] >XP_011660206.1 PREDICTED: ycf20-like protein [Cucumis sativus] >XP_011660207.1 PREDICTED: ycf20-like protein [Cucumis sativus] >KGN66645.1 hypothetical protein Csa_1G652280 [Cucumis sativus])

HSP 1 Score: 421.8 bits (1083), Expect = 1.4e-114
Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 0


Query: 1   MEVGIFQMGAVILHSRLLTTANYSPQVSCLTNMPCLIHYWGYEAIFNGRSSSFLLKSAPF 60
           MEVGIFQMGAVILHSRLLTTANYSPQVSCLTNMPCLIHYWGYEAIFNGRSSSFLLKSAPF
Sbjct: 1   MEVGIFQMGAVILHSRLLTTANYSPQVSCLTNMPCLIHYWGYEAIFNGRSSSFLLKSAPF 60

Query: 61  PRKSLQTSRHVNKLAFALDTGGVSSSGGGDNIDDGDESNLGRTRLGRLVSSGARQLLEKL 120
           PRKSLQTSRHVNKLAFALDTGGVSSSGGGDNIDDGDESNLGRTRLGRLVSSGARQLLEKL
Sbjct: 61  PRKSLQTSRHVNKLAFALDTGGVSSSGGGDNIDDGDESNLGRTRLGRLVSSGARQLLEKL 120

Query: 121 NSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPL 180
           NSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPL
Sbjct: 121 NSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPL 180

Query: 181 LTRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS 213
           LTRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS
Sbjct: 181 LTRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS 212

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BLAST of CsaV3_1G044300 vs. NCBI nr
Match: XP_022924878.1 (ycf20-like protein [Cucurbita moschata] >XP_022924885.1 ycf20-like protein [Cucurbita moschata] >XP_022924895.1 ycf20-like protein [Cucurbita moschata] >XP_022924902.1 ycf20-like protein [Cucurbita moschata] >XP_022924910.1 ycf20-like protein [Cucurbita moschata] >XP_022924918.1 ycf20-like protein [Cucurbita moschata])

HSP 1 Score: 343.2 bits (879), Expect = 6.3e-91
Identity = 172/205 (83.90%), Postives = 187/205 (91.22%), Query Frame = 0


Query: 8   MGAVILHSRLLTTANYSPQVSCLTNMPCLIHYWGYEAIFNGRSSSFLLKSAPFPRKSLQT 67
           M A+I+ SRLLT ANY  +  CLT MPCLIH  GY AI NG +S+  LKSAPFPRKS +T
Sbjct: 1   MEAMIMQSRLLTIANYISKGLCLTYMPCLIHNMGYVAILNGHNSTLCLKSAPFPRKSFRT 60

Query: 68  SRHVNKLAFALDTGGVSSSGGGDNIDDGDESNLGRTRLGRLVSSGARQLLEKLNSARKNF 127
           SRH+ +LAFALDTGGVSS+GGGDN+DDG+ESNLGRTRLGRLVS+GARQLLEKLNSARKNF
Sbjct: 61  SRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSARKNF 120

Query: 128 PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTRRLKS 187
           PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMY+KPPPLLTRRLKS
Sbjct: 121 PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKS 180

Query: 188 FIVMVNYWKAGVCLGLFVDAFKLGS 213
            IV++NYWKAGVCLGLFVDAFKLGS
Sbjct: 181 LIVLINYWKAGVCLGLFVDAFKLGS 205

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BLAST of CsaV3_1G044300 vs. NCBI nr
Match: XP_023520636.1 (ycf20-like protein [Cucurbita pepo subsp. pepo] >XP_023520637.1 ycf20-like protein [Cucurbita pepo subsp. pepo] >XP_023520638.1 ycf20-like protein [Cucurbita pepo subsp. pepo] >XP_023520639.1 ycf20-like protein [Cucurbita pepo subsp. pepo] >XP_023520640.1 ycf20-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 341.7 bits (875), Expect = 1.8e-90
Identity = 171/205 (83.41%), Postives = 186/205 (90.73%), Query Frame = 0


Query: 8   MGAVILHSRLLTTANYSPQVSCLTNMPCLIHYWGYEAIFNGRSSSFLLKSAPFPRKSLQT 67
           M A+I+ SRLLT ANY  +  CLT MPCLIH  GY AI NG +S+  LKS PFPRKS +T
Sbjct: 1   MEAMIMQSRLLTIANYISKGLCLTYMPCLIHNMGYVAILNGHNSTLCLKSVPFPRKSFRT 60

Query: 68  SRHVNKLAFALDTGGVSSSGGGDNIDDGDESNLGRTRLGRLVSSGARQLLEKLNSARKNF 127
           SRH+ +LAFALDTGGVSS+GGGDN+DDG+ESNLGRTRLGRLVS+GARQLLEKLNSARKNF
Sbjct: 61  SRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSARKNF 120

Query: 128 PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTRRLKS 187
           PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMY+KPPPLLTRRLKS
Sbjct: 121 PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKS 180

Query: 188 FIVMVNYWKAGVCLGLFVDAFKLGS 213
            IV++NYWKAGVCLGLFVDAFKLGS
Sbjct: 181 LIVLINYWKAGVCLGLFVDAFKLGS 205

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BLAST of CsaV3_1G044300 vs. NCBI nr
Match: XP_022973215.1 (ycf20-like protein [Cucurbita maxima] >XP_022973224.1 ycf20-like protein [Cucurbita maxima] >XP_022973228.1 ycf20-like protein [Cucurbita maxima] >XP_022973233.1 ycf20-like protein [Cucurbita maxima] >XP_022973241.1 ycf20-like protein [Cucurbita maxima] >XP_022973250.1 ycf20-like protein [Cucurbita maxima])

HSP 1 Score: 340.5 bits (872), Expect = 4.1e-90
Identity = 171/205 (83.41%), Postives = 186/205 (90.73%), Query Frame = 0


Query: 8   MGAVILHSRLLTTANYSPQVSCLTNMPCLIHYWGYEAIFNGRSSSFLLKSAPFPRKSLQT 67
           M A+I+ SRLLT ANY  +  CLT MPCLIH   Y AI NG +S+  LKSAPFPRKS +T
Sbjct: 1   MEAMIMQSRLLTIANYISKGLCLTYMPCLIHNMDYVAILNGHNSTLCLKSAPFPRKSFRT 60

Query: 68  SRHVNKLAFALDTGGVSSSGGGDNIDDGDESNLGRTRLGRLVSSGARQLLEKLNSARKNF 127
           SRH+ +LAFALDTGGVSS+GGGDN+DDG+ESNLGRTRLGRLVS+GARQLLEKLNSARKNF
Sbjct: 61  SRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSARKNF 120

Query: 128 PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTRRLKS 187
           PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMY+KPPPLLTRRLKS
Sbjct: 121 PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKS 180

Query: 188 FIVMVNYWKAGVCLGLFVDAFKLGS 213
            IV++NYWKAGVCLGLFVDAFKLGS
Sbjct: 181 LIVLINYWKAGVCLGLFVDAFKLGS 205

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BLAST of CsaV3_1G044300 vs. NCBI nr
Match: XP_022149955.1 (ycf20-like protein [Momordica charantia])

HSP 1 Score: 324.7 bits (831), Expect = 2.3e-85
Identity = 167/207 (80.68%), Postives = 183/207 (88.41%), Query Frame = 0


Query: 8   MGAVILHSRLLTTANYSPQVSCLTNMPCLIHYWGYEAIFNGRSSSFLLKSAPFPRKSLQT 67
           MGA+IL SRLL   +YS + SCLTN+ CL++YWGY A+FN ++S+  LKSAPFPR+S QT
Sbjct: 6   MGAMILQSRLLKIESYSSRGSCLTNISCLVYYWGYAAVFNAQNSTRCLKSAPFPRRSFQT 65

Query: 68  SRHV--NKLAFALDTGGVSSSGGGDNIDDGDESNLGRTRLGRLVSSGARQLLEKLNSARK 127
           SRH+   KLAFALDT G+  +GG DN  DGDESNLGRTRLGRLVSS ARQLLEKLNSARK
Sbjct: 66  SRHLRKRKLAFALDTSGLPRNGGEDN-PDGDESNLGRTRLGRLVSSAARQLLEKLNSARK 125

Query: 128 NFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTRRL 187
           NFP KIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIE IG+LMYRKPPPLLTRRL
Sbjct: 126 NFPMKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEGIGVLMYRKPPPLLTRRL 185

Query: 188 KSFIVMVNYWKAGVCLGLFVDAFKLGS 213
           KSFIVM+NYWKAGVCLGLFVDAFKLGS
Sbjct: 186 KSFIVMINYWKAGVCLGLFVDAFKLGS 211

[Close]

BLAST of CsaV3_1G044300 vs. TAIR10
Match: AT1G65420.1 (Protein of unknown function (DUF565))

HSP 1 Score: 206.5 bits (524), Expect = 1.7e-53
Identity = 108/166 (65.06%), Postives = 130/166 (78.31%), Query Frame = 0


Query: 49  RSSSFLLKSAPFPRKSLQTSRHVNKLAFALDTGGVSSSGGGDNID-DGDESNLGRTRLGR 108
           ++SS  L S P+P KS Q  R   K+AFALDTG       G+  + +GD + LG TRLGR
Sbjct: 32  KASSITLTSFPYPMKSFQIRRPNRKIAFALDTGSSIPGDSGEGQEMNGDRTGLGSTRLGR 91

Query: 109 LVSSGARQLLEKLNSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIE 168
           +  +G +QLL K+NSARKNFP KIFLLLLGFYTANALATILGQTGDWDVLVAG+VVAAIE
Sbjct: 92  IAIAGGKQLLGKINSARKNFPMKIFLLLLGFYTANALATILGQTGDWDVLVAGIVVAAIE 151

Query: 169 WIGILMYRKP-PPLLTRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS 213
            IG+LMY+KP   + + +L+SF+V +N+WKAGVCLGLFVDAFKLGS
Sbjct: 152 GIGMLMYKKPSSSMFSGKLQSFVVFMNFWKAGVCLGLFVDAFKLGS 197

[Close]

BLAST of CsaV3_1G044300 vs. TAIR10
Match: AT3G56830.1 (Protein of unknown function (DUF565))

HSP 1 Score: 114.0 bits (284), Expect = 1.1e-25
Identity = 62/145 (42.76%), Postives = 89/145 (61.38%), Query Frame = 0


Query: 69  RHVNKLAFALDTGGVSSSGGGDNIDDGDESNLGRT----RLGRLVSSGARQLLEKLNSAR 128
           RH  ++++      + SS GGD  D    S+   +    RL + +     +LL K+   +
Sbjct: 48  RHQRRMSWTT----IKSSVGGDRFDPASGSSSNNSSRGLRLIKAIQVLRSKLLVKIQEIK 107

Query: 129 KNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTRR 188
           K+ P K+F LL+GFY+A A +T +GQTGDWDVL AG+ V  +E IG LMYR   PL+  +
Sbjct: 108 KDLPKKLFFLLVGFYSATAFSTFIGQTGDWDVLSAGLAVLVVECIGALMYRASIPLI-NK 167

Query: 189 LKSFIVMVNYWKAGVCLGLFVDAFK 210
           ++S I M NYWK G+ LGLF+D+FK
Sbjct: 168 MRSTITMFNYWKTGLALGLFLDSFK 187

[Close]

BLAST of CsaV3_1G044300 vs. TAIR10
Match: AT5G43050.1 (Protein of unknown function (DUF565))

HSP 1 Score: 42.7 bits (99), Expect = 3.2e-04
Identity = 29/80 (36.25%), Postives = 41/80 (51.25%), Query Frame = 0


Query: 134 LLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTRRLKSF-IVMV 193
           LL GFY A  ++   G  G  DV+ A + V   E++    Y       +R   +F I ++
Sbjct: 86  LLGGFYVAQTISLSFGALGVNDVIAAVLCVLLTEYVTRFYY-------SRTTVTFPIALL 145

Query: 194 NYWKAGVCLGLFVDAFKLGS 213
           N +K G   GLF+DAFKL S
Sbjct: 146 NNFKMGFTYGLFIDAFKLAS 158

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BLAST of CsaV3_1G044300 vs. Swiss-Prot
Match: sp|O80813|YC20L_ARATH (Ycf20-like protein OS=Arabidopsis thaliana OX=3702 GN=At1g65420 PE=2 SV=2)

HSP 1 Score: 206.5 bits (524), Expect = 3.0e-52
Identity = 108/166 (65.06%), Postives = 130/166 (78.31%), Query Frame = 0


Query: 49  RSSSFLLKSAPFPRKSLQTSRHVNKLAFALDTGGVSSSGGGDNID-DGDESNLGRTRLGR 108
           ++SS  L S P+P KS Q  R   K+AFALDTG       G+  + +GD + LG TRLGR
Sbjct: 32  KASSITLTSFPYPMKSFQIRRPNRKIAFALDTGSSIPGDSGEGQEMNGDRTGLGSTRLGR 91

Query: 109 LVSSGARQLLEKLNSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIE 168
           +  +G +QLL K+NSARKNFP KIFLLLLGFYTANALATILGQTGDWDVLVAG+VVAAIE
Sbjct: 92  IAIAGGKQLLGKINSARKNFPMKIFLLLLGFYTANALATILGQTGDWDVLVAGIVVAAIE 151

Query: 169 WIGILMYRKP-PPLLTRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS 213
            IG+LMY+KP   + + +L+SF+V +N+WKAGVCLGLFVDAFKLGS
Sbjct: 152 GIGMLMYKKPSSSMFSGKLQSFVVFMNFWKAGVCLGLFVDAFKLGS 197

[Close]

BLAST of CsaV3_1G044300 vs. Swiss-Prot
Match: sp|Q9MUL5|YCF20_MESVI (Uncharacterized protein ycf20 OS=Mesostigma viride OX=41882 GN=ycf20 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 7.5e-19
Identity = 57/118 (48.31%), Postives = 76/118 (64.41%), Query Frame = 0


Query: 100 LGRTRLGRLVSSGARQLLEKLNSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVA 159
           +  TRL    ++  + L  K+ +   NFP KI LLLLGF+ A  LAT+ GQTGDWDVLVA
Sbjct: 1   MSNTRLTLFFTNIFQLLDSKIQNYSINFPIKILLLLLGFFIATVLATVFGQTGDWDVLVA 60

Query: 160 GVVVAAIEWIGILMYRKPPPLLTRRLK---SF--IVMVNYWKAGVCLGLFVDAFKLGS 213
           G++VA IE +G  MY K    ++++     SF  ++ +NY K G+  GLFVDAFKLGS
Sbjct: 61  GILVAMIEILGNKMYSK--KYISKKQVFDISFLSLIGINYIKIGLIFGLFVDAFKLGS 116

[Close]

BLAST of CsaV3_1G044300 vs. Swiss-Prot
Match: sp|Q1XDS2|YCF20_PYRYE (Uncharacterized protein ycf20 OS=Pyropia yezoensis OX=2788 GN=ycf20 PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.8e-12
Identity = 43/111 (38.74%), Postives = 62/111 (55.86%), Query Frame = 0


Query: 102 RTRLGRLVSSGARQLLEKLNSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGV 161
           +TRL    +   + L  KL  +     T +  LLLGF+ +  L+TI GQTGDW ++ A +
Sbjct: 3   KTRLSTFFAYLIKNLNNKLYYSLSELTTGLISLLLGFFISTGLSTIPGQTGDWGIIAASL 62

Query: 162 VVAAIEWIGILMYRKPPPLLTRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS 213
           +VAA E    ++Y        ++L   I + N +K G+  GLFVDAFKLGS
Sbjct: 63  IVAATELTSKIVYSS-----HKQLNIKINLFNNFKIGITYGLFVDAFKLGS 108

[Close]

BLAST of CsaV3_1G044300 vs. Swiss-Prot
Match: sp|P51214|YCF20_PORPU (Uncharacterized protein ycf20 OS=Porphyra purpurea OX=2787 GN=ycf20 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.3e-12
Identity = 43/111 (38.74%), Postives = 61/111 (54.95%), Query Frame = 0


Query: 102 RTRLGRLVSSGARQLLEKLNSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGV 161
           RT+L    S   + L  +L  +       +  LLLGF+ +  L+TI GQTGDW ++ A +
Sbjct: 3   RTKLSIFFSYFVQNLSSRLYYSLNELTAGLISLLLGFFISTGLSTIPGQTGDWGIIAASL 62

Query: 162 VVAAIEWIGILMYRKPPPLLTRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS 213
           +VAAIE +  ++Y        R     I ++N  K G+  GLFVDAFKLGS
Sbjct: 63  IVAAIELVSKIVYSNKKKYGVR-----INLLNNLKIGITYGLFVDAFKLGS 108

[Close]

BLAST of CsaV3_1G044300 vs. Swiss-Prot
Match: sp|P72983|YC20L_SYNY3 (Ycf20-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=sll1509 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 6.0e-08
Identity = 34/111 (30.63%), Postives = 55/111 (49.55%), Query Frame = 0


Query: 102 RTRLGRLVSSGARQLLEKLNSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGV 161
           RTRL  +V    +QL +   +  +     +   L GF+   A+AT  GQ   WDV+ A  
Sbjct: 3   RTRLNTIVEVRGQQLSQFFRNPWRRISLSLLSFLFGFFVGTAVATTAGQNSQWDVVCAAF 62

Query: 162 VVAAIEWIGILMYRKPPPLLTRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS 213
           ++   E +    YR+   +   + +    ++N +K GV   LF++AFKLGS
Sbjct: 63  ILLFCELVNRWFYRRGVKMGDLQAE----VLNIFKMGVSYSLFLEAFKLGS 109

[Close]

BLAST of CsaV3_1G044300 vs. TrEMBL
Match: tr|A0A0A0LXR2|A0A0A0LXR2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G652280 PE=4 SV=1)

HSP 1 Score: 421.8 bits (1083), Expect = 9.3e-115
Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 0


Query: 1   MEVGIFQMGAVILHSRLLTTANYSPQVSCLTNMPCLIHYWGYEAIFNGRSSSFLLKSAPF 60
           MEVGIFQMGAVILHSRLLTTANYSPQVSCLTNMPCLIHYWGYEAIFNGRSSSFLLKSAPF
Sbjct: 1   MEVGIFQMGAVILHSRLLTTANYSPQVSCLTNMPCLIHYWGYEAIFNGRSSSFLLKSAPF 60

Query: 61  PRKSLQTSRHVNKLAFALDTGGVSSSGGGDNIDDGDESNLGRTRLGRLVSSGARQLLEKL 120
           PRKSLQTSRHVNKLAFALDTGGVSSSGGGDNIDDGDESNLGRTRLGRLVSSGARQLLEKL
Sbjct: 61  PRKSLQTSRHVNKLAFALDTGGVSSSGGGDNIDDGDESNLGRTRLGRLVSSGARQLLEKL 120

Query: 121 NSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPL 180
           NSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPL
Sbjct: 121 NSARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPL 180

Query: 181 LTRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS 213
           LTRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS
Sbjct: 181 LTRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS 212

[Close]

BLAST of CsaV3_1G044300 vs. TrEMBL
Match: tr|A0A1S3B8Z3|A0A1S3B8Z3_CUCME (ycf20-like protein OS=Cucumis melo OX=3656 GN=LOC103487471 PE=4 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 9.4e-75
Identity = 146/151 (96.69%), Postives = 148/151 (98.01%), Query Frame = 0


Query: 62  RKSLQTSRHVNKLAFALDTGGVSSSGGGDNIDDGDESNLGRTRLGRLVSSGARQLLEKLN 121
           R   QTSRHVNK+AFALDTGGVSSSGGGDN+DDGDESNLGRTRLGRLVSSGARQLLEKLN
Sbjct: 67  RCGFQTSRHVNKIAFALDTGGVSSSGGGDNVDDGDESNLGRTRLGRLVSSGARQLLEKLN 126

Query: 122 SARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLL 181
           SARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLL
Sbjct: 127 SARKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLL 186

Query: 182 TRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS 213
           TRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS
Sbjct: 187 TRRLKSFIVMVNYWKAGVCLGLFVDAFKLGS 217

[Close]

BLAST of CsaV3_1G044300 vs. TrEMBL
Match: tr|A0A061EXE3|A0A061EXE3_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_025117 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.2e-66
Identity = 142/207 (68.60%), Postives = 161/207 (77.78%), Query Frame = 0


Query: 7   QMGAVILHSRLLTTANYSPQVSCLTNMPCLIHYWGYEAIFNGRSSSFLLKSAPFPRKSLQ 66
           Q+G + L + L    N   + SC+T   C I  W  E    G++S   LKSA FP+KS  
Sbjct: 4   QVGRMYLQAGLSILENEVLESSCMTLATCAIQRWIIEPSICGQASKIGLKSALFPKKSFS 63

Query: 67  T-SRHVNKLAFALDTGGVSSSGGGDNIDDGDESNLGRTRLGRLVSSGARQLLEKLNSARK 126
           T  RH  K+AFALDTGGVS  GG D++ + D SNLG TRLGR+VS+G+RQLLEKLNSARK
Sbjct: 64  TRKRHGWKIAFALDTGGVSGDGGEDSL-NSDSSNLGGTRLGRIVSAGSRQLLEKLNSARK 123

Query: 127 NFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTRRL 186
           NFP K+FLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIE IG+LMYRKPP L T RL
Sbjct: 124 NFPMKVFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEGIGMLMYRKPPSLKTGRL 183

Query: 187 KSFIVMVNYWKAGVCLGLFVDAFKLGS 213
           +SF+VMVNYWKAGVCLGLFVDAFKLGS
Sbjct: 184 QSFVVMVNYWKAGVCLGLFVDAFKLGS 209

[Close]

BLAST of CsaV3_1G044300 vs. TrEMBL
Match: tr|A0A1U8NUU7|A0A1U8NUU7_GOSHI (ycf20-like protein isoform X2 OS=Gossypium hirsutum OX=3635 GN=LOC107951948 PE=4 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 2.0e-64
Identity = 140/206 (67.96%), Postives = 155/206 (75.24%), Query Frame = 0


Query: 7   QMGAVILHSRLLTTANYSPQVSCLTNMPCLIHYWGYEAIFNGRSSSFLLKSAPFPRKSLQ 66
           Q+G + L + L  + N     SCLT   C I  W  E   +G+SS   LKS  FPRKS  
Sbjct: 4   QVGRINLQAGLSISENDVFASSCLTLATCAIQRWSNEYSLSGQSSKIGLKSLTFPRKSSS 63

Query: 67  TSRHVNKLAFALDTGGVSSSGGGDNIDDGDESNLGRTRLGRLVSSGARQLLEKLNSARKN 126
           T RH  K+A ALDTGGV   G G++  + D SNLG TRLGR+VS+G RQLLEKLNSARKN
Sbjct: 64  TKRHGWKIALALDTGGV--PGNGEDSLNSDSSNLGGTRLGRVVSAGGRQLLEKLNSARKN 123

Query: 127 FPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTRRLK 186
           FP KIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIE IG+LMYRK P L T RL+
Sbjct: 124 FPMKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEGIGMLMYRKSPSLKTGRLQ 183

Query: 187 SFIVMVNYWKAGVCLGLFVDAFKLGS 213
           S +VMVNYWKAGVCLGLFVDAFKLGS
Sbjct: 184 SIVVMVNYWKAGVCLGLFVDAFKLGS 207

[Close]

BLAST of CsaV3_1G044300 vs. TrEMBL
Match: tr|A0A1U8NXB9|A0A1U8NXB9_GOSHI (ycf20-like protein isoform X1 OS=Gossypium hirsutum OX=3635 GN=LOC107951948 PE=4 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 2.0e-64
Identity = 140/206 (67.96%), Postives = 155/206 (75.24%), Query Frame = 0


Query: 7   QMGAVILHSRLLTTANYSPQVSCLTNMPCLIHYWGYEAIFNGRSSSFLLKSAPFPRKSLQ 66
           Q+G + L + L  + N     SCLT   C I  W  E   +G+SS   LKS  FPRKS  
Sbjct: 8   QVGRINLQAGLSISENDVFASSCLTLATCAIQRWSNEYSLSGQSSKIGLKSLTFPRKSSS 67

Query: 67  TSRHVNKLAFALDTGGVSSSGGGDNIDDGDESNLGRTRLGRLVSSGARQLLEKLNSARKN 126
           T RH  K+A ALDTGGV   G G++  + D SNLG TRLGR+VS+G RQLLEKLNSARKN
Sbjct: 68  TKRHGWKIALALDTGGV--PGNGEDSLNSDSSNLGGTRLGRVVSAGGRQLLEKLNSARKN 127

Query: 127 FPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTRRLK 186
           FP KIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIE IG+LMYRK P L T RL+
Sbjct: 128 FPMKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEGIGMLMYRKSPSLKTGRLQ 187

Query: 187 SFIVMVNYWKAGVCLGLFVDAFKLGS 213
           S +VMVNYWKAGVCLGLFVDAFKLGS
Sbjct: 188 SIVVMVNYWKAGVCLGLFVDAFKLGS 211

The following BLAST results are available for this feature:

BLAST of CsaV3_1G044300 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139097.1	1.4e-114	100.00	PREDICTED: ycf20-like protein [Cucumis sativus] >XP_011660206.1 PREDICTED: ycf20...	[more]
XP_022924878.1	6.3e-91	83.90	ycf20-like protein [Cucurbita moschata] >XP_022924885.1 ycf20-like protein [Cucu...	[more]
XP_023520636.1	1.8e-90	83.41	ycf20-like protein [Cucurbita pepo subsp. pepo] >XP_023520637.1 ycf20-like prote...	[more]
XP_022973215.1	4.1e-90	83.41	ycf20-like protein [Cucurbita maxima] >XP_022973224.1 ycf20-like protein [Cucurb...	[more]
XP_022149955.1	2.3e-85	80.68	ycf20-like protein [Momordica charantia]	[more]

BLAST of CsaV3_1G044300 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G65420.1	1.7e-53	65.06	Protein of unknown function (DUF565)	[more]
AT3G56830.1	1.1e-25	42.76	Protein of unknown function (DUF565)	[more]
AT5G43050.1	3.2e-04	36.25	Protein of unknown function (DUF565)	[more]

BLAST of CsaV3_1G044300 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O80813\|YC20L_ARATH	3.0e-52	65.06	Ycf20-like protein OS=Arabidopsis thaliana OX=3702 GN=At1g65420 PE=2 SV=2	[more]
sp\|Q9MUL5\|YCF20_MESVI	7.5e-19	48.31	Uncharacterized protein ycf20 OS=Mesostigma viride OX=41882 GN=ycf20 PE=3 SV=1	[more]
sp\|Q1XDS2\|YCF20_PYRYE	1.8e-12	38.74	Uncharacterized protein ycf20 OS=Pyropia yezoensis OX=2788 GN=ycf20 PE=3 SV=1	[more]
sp\|P51214\|YCF20_PORPU	2.3e-12	38.74	Uncharacterized protein ycf20 OS=Porphyra purpurea OX=2787 GN=ycf20 PE=3 SV=1	[more]
sp\|P72983\|YC20L_SYNY3	6.0e-08	30.63	Ycf20-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN...	[more]

BLAST of CsaV3_1G044300 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LXR2\|A0A0A0LXR2_CUCSA	9.3e-115	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G652280 PE=4 SV=1	[more]
tr\|A0A1S3B8Z3\|A0A1S3B8Z3_CUCME	9.4e-75	96.69	ycf20-like protein OS=Cucumis melo OX=3656 GN=LOC103487471 PE=4 SV=1	[more]
tr\|A0A061EXE3\|A0A061EXE3_THECC	1.2e-66	68.60	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_025117 PE=4 SV=1	[more]
tr\|A0A1U8NUU7\|A0A1U8NUU7_GOSHI	2.0e-64	67.96	ycf20-like protein isoform X2 OS=Gossypium hirsutum OX=3635 GN=LOC107951948 PE=4...	[more]
tr\|A0A1U8NXB9\|A0A1U8NXB9_GOSHI	2.0e-64	67.96	ycf20-like protein isoform X1 OS=Gossypium hirsutum OX=3635 GN=LOC107951948 PE=4...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007572	Uncharacterised_Ycf20

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0010196	nonphotochemical quenching
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G044300.1	CsaV3_1G044300.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007572	Uncharacterised protein family Ycf20	PFAM	PF04483	DUF565	coord: 150..212 e-value: 1.5E-21 score: 76.6
IPR007572	Uncharacterised protein family Ycf20	PANTHER	PTHR33787	FAMILY NOT NAMED	coord: 7..212
None	No IPR available	PANTHER	PTHR33787:SF4	YCF20-LIKE PROTEIN	coord: 7..212

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G044300	CSPI01G32020	Wild cucumber (PI 183967)	cpicucB000
CsaV3_1G044300	Cucsa.356420	Cucumber (Gy14) v1	cgycucB542
CsaV3_1G044300	CmaCh11G009250	Cucurbita maxima (Rimu)	cmacucB0099
CsaV3_1G044300	CmoCh11G009470	Cucurbita moschata (Rifu)	cmocucB0090
CsaV3_1G044300	Cp4.1LG00g01450	Cucurbita pepo (Zucchini)	cpecucB0000
CsaV3_1G044300	CsGy1G031030	Cucumber (Gy14) v2	cgybcucB001
CsaV3_1G044300	Carg22715	Silver-seed gourd	carcucB0573
CsaV3_1G044300	Cla009511	Watermelon (97103) v1	cucwmB016
CsaV3_1G044300	MELO3C010023	Melon (DHL92) v3.5.1	cucmeB044
CsaV3_1G044300	ClCG03G010340	Watermelon (Charleston Gray)	cucwcgB041
CsaV3_1G044300	Lsi06G006760	Bottle gourd (USVL1VR-Ls)	cuclsiB068
CsaV3_1G044300	MELO3C010023.2	Melon (DHL92) v3.6.1	cucmedB041
CsaV3_1G044300	Cla97C03G061050	Watermelon (97103) v2	cucwmbB033
CsaV3_1G044300	Bhi02G001108	Wax gourd	cucwgoB115

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G044300	Silver-seed gourd	carcucB1010
CsaV3_1G044300	Cucurbita maxima (Rimu)	cmacucB0066
CsaV3_1G044300	Cucurbita moschata (Rifu)	cmocucB0053
CsaV3_1G044300	Cucurbita pepo (Zucchini)	cpecucB0428