Cp4.1LG00g01450 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG00g01450
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Ycf20-like protein
Location	Cp4.1LG00 : 3751462 .. 3753113 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGCTGTTCATTGTCTTTCTCTGCAACGAAACAGATTTTGTGAACAATTTCCTCTAATGGGCAACGATTTTCGAGGATGAGGGTAACCACATCGCCCTTCGTTTGACGCATTTCGCCTCTAGGGTTTCGTCTCGGAGCTATCAATTCCAGTGGCATTTGAAGTTTCCGGCAATTTCAACCCTCCGGCAAGAACTTTACTGGTAATTTTCTCGGTCTCGAAATTTCATTTGTATTTCTCTTGCCTGAATTTGTTGTGTGTTCTAATTCACTGCTGAAGTACTTGCTTGAATGTTCCTCGAGCATCATAGGCCGACTAGACTGCAACTGTTTGATATTTCTCCTTTATCTCTTGCATTTCGGTTGGGATGCACGATAGTGATCATATGTTGAATATCCTACGCATTGTTTTGAATTCTAAACATTGGATTTTAGATTTGTTGCAAAGTTGTAGATTGAACAATTTTGATTTGATTTTAATTTGTAGTACAGAGGCTGTCTCTTTTGATTCGAAGATTGTGTAATAAATGGCAATATCAGTATGCAGATAACCACCCGCTCGAATGGAAGCTATGATTATGCAGTCCAGATTATTGACAATAGCGAATTATATCTCCAAAGGATTATGTCTTACTTATATGCCTTGCCTAATCCATAACATGGGCTATGTGGCTATCCTTAATGGACACAATTCAACTCTTTGCTTGAAGTCTGTCCCTTTTCCTCGAAAAAGGTAGATGTGGAATTTATAAACTTCTATCACGTGTTGTTAAGAGACCTGTGCTATTCTTCTTGCATATATTTCCATTTTAGCTGGAGAATTATTGGTTCATAAGATCATGTCTTAATAGTATTGGATGAATGCTAATTTTGTTGAGCACAAAAGTTAAGCTGGAGAGGAACAGATTAGTAGCACGTCTAGAGAGGTTGAGAAATCTTGGGAGGGGATTGGGGGAGGTTGCTAGATTTAATGCATCTTGTGAGCGTCCATTCTTTTTTAATTACTAGTTTGGTCTCTTTCTTTTGGATTGAAGTCTCTTTCTGTAGTTAGTGTTAAGTCTCCTTTTGCGGGCTCCTTTTTTGTATGTCCTCGTACATTCTTTCACTTTTCTATATAAAGTTTTTCTTTTTTTCTTATTTAAAAGAAGAAAAGTAAACTCCGTATCGTTGCTGTTATGAACATTCGTTTGTGATGTTATTTTTTACAGTTTCCGGACGAGTAGACATCTACAACAATTAGCCTTTGCATTAGACACAGGTGGGGTATCTAGTAACGGTGGGGGAGACAACCTTGATGATGGTAATGAGTCGAATCTGGGTCGTACTCGATTAGGCAGGCTAGTTAGTGCAGGTGCCAGACAGTTACTGGAAAAACTAAACTCAGCTAGAAAGAACTTTCCTACAAAGATATTTTTGCTTCTTTTGGGTTTCTATACAGCCAATGCTCTTGCTACAATTCTTGGGCAGACGGGTGACTGGGATGTTTTGGTTGCTGGTGTGGTGGTTGCTGCCATTGAATGGATTGGTATACTCATGTACAAGAAGCCACCACCTCTATTAACTAGGAGGTTGAAATCATTAATAGTACTGATAAACTATTGGAAAGCCGGCGTATGCTTAGGCCTCTTCGTCGATGCGTTCAAGTTGGGGAGTTGA

mRNA sequence

TGCTGTTCATTGTCTTTCTCTGCAACGAAACAGATTTTGTGAACAATTTCCTCTAATGGGCAACGATTTTCGAGGATGAGGGTAACCACATCGCCCTTCGTTTGACGCATTTCGCCTCTAGGGTTTCGTCTCGGAGCTATCAATTCCAGTGGCATTTGAAGTTTCCGGCAATTTCAACCCTCCGGCAAGAACTTTACTGTACAGAGGCTGTCTCTTTTGATTCGAAGATTGTGTAATAAATGGCAATATCAGTATGCAGATAACCACCCGCTCGAATGGAAGCTATGATTATGCAGTCCAGATTATTGACAATAGCGAATTATATCTCCAAAGGATTATGTCTTACTTATATGCCTTGCCTAATCCATAACATGGGCTATGTGGCTATCCTTAATGGACACAATTCAACTCTTTGCTTGAAGTCTGTCCCTTTTCCTCGAAAAAGACATCTACAACAATTAGCCTTTGCATTAGACACAGGTGGGGTATCTAGTAACGGTGGGGGAGACAACCTTGATGATGGTAATGAGTCGAATCTGGGTCGTACTCGATTAGGCAGGCTAGTTAGTGCAGCCAATGCTCTTGCTACAATTCTTGGGCAGACGGGTGACTGGGATGTTTTGGTTGCTGGTGTGGTGGTTGCTGCCATTGAATGGATTGGTATACTCATGTACAAGAAGCCACCACCTCTATTAACTAGGAGGTTGAAATCATTAATAGTACTGATAAACTATTGGAAAGCCGGCGTATGCTTAGGCCTCTTCGTCGATGCGTTCAAGTTGGGGAGTTGA

Coding sequence (CDS)

ATGGAAGCTATGATTATGCAGTCCAGATTATTGACAATAGCGAATTATATCTCCAAAGGATTATGTCTTACTTATATGCCTTGCCTAATCCATAACATGGGCTATGTGGCTATCCTTAATGGACACAATTCAACTCTTTGCTTGAAGTCTGTCCCTTTTCCTCGAAAAAGACATCTACAACAATTAGCCTTTGCATTAGACACAGGTGGGGTATCTAGTAACGGTGGGGGAGACAACCTTGATGATGGTAATGAGTCGAATCTGGGTCGTACTCGATTAGGCAGGCTAGTTAGTGCAGCCAATGCTCTTGCTACAATTCTTGGGCAGACGGGTGACTGGGATGTTTTGGTTGCTGGTGTGGTGGTTGCTGCCATTGAATGGATTGGTATACTCATGTACAAGAAGCCACCACCTCTATTAACTAGGAGGTTGAAATCATTAATAGTACTGATAAACTATTGGAAAGCCGGCGTATGCTTAGGCCTCTTCGTCGATGCGTTCAAGTTGGGGAGTTGA

Protein sequence

MEAMIMQSRLLTIANYISKGLCLTYMPCLIHNMGYVAILNGHNSTLCLKSVPFPRKRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS

Homology

[Close]

BLAST of Cp4.1LG00g01450 vs. Swiss-Prot
Match: YC20L_ARATH (Ycf20-like protein OS=Arabidopsis thaliana GN=At1g65420 PE=2 SV=2)

HSP 1 Score: 131.3 bits (329), Expect = 9.8e-30
Identity = 80/164 (48.78%), Postives = 101/164 (61.59%), Query Frame = 1


Query: 44  STLCLKSVPFPRK-----RHLQQLAFALDTGGVSSNGGGDNLD-DGNESNLGRTRLGRLV 103
           S++ L S P+P K     R  +++AFALDTG       G+  + +G+ + LG TRLGR+ 
Sbjct: 34  SSITLTSFPYPMKSFQIRRPNRKIAFALDTGSSIPGDSGEGQEMNGDRTGLGSTRLGRIA 93

Query: 104 SA-----------------------------ANALATILGQTGDWDVLVAGVVVAAIEWI 163
            A                             ANALATILGQTGDWDVLVAG+VVAAIE I
Sbjct: 94  IAGGKQLLGKINSARKNFPMKIFLLLLGFYTANALATILGQTGDWDVLVAGIVVAAIEGI 153

Query: 164 GILMYKKP-PPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS 172
           G+LMYKKP   + + +L+S +V +N+WKAGVCLGLFVDAFKLGS
Sbjct: 154 GMLMYKKPSSSMFSGKLQSFVVFMNFWKAGVCLGLFVDAFKLGS 197

[Close]

BLAST of Cp4.1LG00g01450 vs. Swiss-Prot
Match: YCF20_MESVI (Uncharacterized protein ycf20 OS=Mesostigma viride GN=ycf20 PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.6e-11
Identity = 43/76 (56.58%), Postives = 49/76 (64.47%), Query Frame = 1


Query: 100 ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKK----PPPLLTRRLKSLIVLINYWK 159
           A  LAT+ GQTGDWDVLVAG++VA IE +G  MY K       +      SLI  INY K
Sbjct: 42  ATVLATVFGQTGDWDVLVAGILVAMIEILGNKMYSKKYISKKQVFDISFLSLIG-INYIK 101

Query: 160 AGVCLGLFVDAFKLGS 172
            G+  GLFVDAFKLGS
Sbjct: 102 IGLIFGLFVDAFKLGS 116

[Close]

BLAST of Cp4.1LG00g01450 vs. Swiss-Prot
Match: YCF20_PORPU (Uncharacterized protein ycf20 OS=Porphyra purpurea GN=ycf20 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.6e-08
Identity = 33/72 (45.83%), Postives = 44/72 (61.11%), Query Frame = 1


Query: 100 ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGVC 159
           +  L+TI GQTGDW ++ A ++VAAIE +  ++Y        R     I L+N  K G+ 
Sbjct: 42  STGLSTIPGQTGDWGIIAASLIVAAIELVSKIVYSNKKKYGVR-----INLLNNLKIGIT 101

Query: 160 LGLFVDAFKLGS 172
            GLFVDAFKLGS
Sbjct: 102 YGLFVDAFKLGS 108

[Close]

BLAST of Cp4.1LG00g01450 vs. Swiss-Prot
Match: YCF20_PYRYE (Uncharacterized protein ycf20 OS=Pyropia yezoensis GN=ycf20 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 8.1e-08
Identity = 32/72 (44.44%), Postives = 44/72 (61.11%), Query Frame = 1


Query: 100 ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGVC 159
           +  L+TI GQTGDW ++ A ++VAA E    ++Y        ++L   I L N +K G+ 
Sbjct: 42  STGLSTIPGQTGDWGIIAASLIVAATELTSKIVYSS-----HKQLNIKINLFNNFKIGIT 101

Query: 160 LGLFVDAFKLGS 172
            GLFVDAFKLGS
Sbjct: 102 YGLFVDAFKLGS 108

[Close]

BLAST of Cp4.1LG00g01450 vs. Swiss-Prot
Match: YCF20_GALSU (Uncharacterized protein ycf20 OS=Galdieria sulphuraria GN=ycf20 PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 9.9e-06
Identity = 27/75 (36.00%), Postives = 44/75 (58.67%), Query Frame = 1


Query: 97  VSAANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKA 156
           + ++N L TI  QTGDW + +   ++A  E I  + Y +    + +  K++I   N +K 
Sbjct: 12  IFSSNLLCTIYTQTGDWSLYLTSCIIALYEIISYISYNQ---FIKKTHKNIINCFNGFKI 71

Query: 157 GVCLGLFVDAFKLGS 172
           G+  GL++DAFKLGS
Sbjct: 72  GLIYGLYLDAFKLGS 83

[Close]

BLAST of Cp4.1LG00g01450 vs. TrEMBL
Match: A0A0A0LXR2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G652280 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 1.3e-65
Identity = 139/205 (67.80%), Postives = 153/205 (74.63%), Query Frame = 1


Query: 1   MEAMIMQSRLLTIANYISKGLCLTYMPCLIHNMGYVAILNGHNSTLCLKSVPFPRK---- 60
           M A+I+ SRLLT ANY  +  CLT MPCLIH  GY AI NG +S+  LKS PFPRK    
Sbjct: 8   MGAVILHSRLLTTANYSPQVSCLTNMPCLIHYWGYEAIFNGRSSSFLLKSAPFPRKSLQT 67

Query: 61  -RHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSA---------------- 120
            RH+ +LAFALDTGGVSS+GGGDN+DDG+ESNLGRTRLGRLVS+                
Sbjct: 68  SRHVNKLAFALDTGGVSSSGGGDNIDDGDESNLGRTRLGRLVSSGARQLLEKLNSARKNF 127

Query: 121 -------------ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKS 172
                        ANALATILGQTGDWDVLVAGVVVAAIEWIGILMY+KPPPLLTRRLKS
Sbjct: 128 PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTRRLKS 187

[Close]

BLAST of Cp4.1LG00g01450 vs. TrEMBL
Match: A0A061EXE3_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_025117 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 5.0e-41
Identity = 106/203 (52.22%), Postives = 127/203 (62.56%), Query Frame = 1


Query: 4   MIMQSRLLTIANYISKGLCLTYMPCLIHNMGYVAILNGHNSTLCLKSVPFP------RKR 63
           M +Q+ L  + N + +  C+T   C I        + G  S + LKS  FP      RKR
Sbjct: 8   MYLQAGLSILENEVLESSCMTLATCAIQRWIIEPSICGQASKIGLKSALFPKKSFSTRKR 67

Query: 64  HLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSA------------------ 123
           H  ++AFALDTGGVS +GG D+L+  + SNLG TRLGR+VSA                  
Sbjct: 68  HGWKIAFALDTGGVSGDGGEDSLNS-DSSNLGGTRLGRIVSAGSRQLLEKLNSARKNFPM 127

Query: 124 -----------ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKSLI 172
                      ANALATILGQTGDWDVLVAGVVVAAIE IG+LMY+KPP L T RL+S +
Sbjct: 128 KVFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEGIGMLMYRKPPSLKTGRLQSFV 187

[Close]

BLAST of Cp4.1LG00g01450 vs. TrEMBL
Match: A0A067JSH3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18069 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 2.8e-39
Identity = 100/205 (48.78%), Postives = 126/205 (61.46%), Query Frame = 1


Query: 1   MEAMIMQSRLLTIANYISKGLCLTYMPCLIHNMGYVAILNGHNSTLCLKSVPFPRKRHLQ 60
           +E  +++S LL +   +SK  C+ +  C + N       +G  S + +   PF ++R   
Sbjct: 5   LEFRMLRSGLLAMETEVSKRSCINHATCAMQNWSVAPNFSGQTSKIGVNFPPFLKQRFQL 64

Query: 61  Q-----LAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSA---------------- 120
           +     + FALDTGG++ NGG +NLD G+ S LG TRLGR+VSA                
Sbjct: 65  RRCDWRIPFALDTGGIAGNGGPENLD-GDSSGLGGTRLGRIVSAGSRQLLQKLNSARKNF 124

Query: 121 -------------ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKS 172
                        ANALATILGQTGDWDVLVAGVVVAAIE IG+LMYKKP  L T RL+S
Sbjct: 125 PMKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEGIGMLMYKKPTSLSTGRLQS 184

[Close]

BLAST of Cp4.1LG00g01450 vs. TrEMBL
Match: B9HHY4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s07660g PE=4 SV=2)

HSP 1 Score: 169.1 bits (427), Expect = 4.7e-39
Identity = 98/203 (48.28%), Postives = 124/203 (61.08%), Query Frame = 1


Query: 3   AMIMQSRLLTIANYISKGLCLTYMPCLIHNMGYVAILNGHNSTLCLKSVPFPR-----KR 62
           A ++QS L  + N +S+  C+T   C + N       +G  S + +K VPF +     +R
Sbjct: 7   ARMLQSGLSVMVNEVSERTCITIATCAMQNRNSEPSFSGQASKIGIKFVPFQKTRFQLRR 66

Query: 63  HLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSA------------------ 122
              ++AFALDTGG+  NGG +N++  +   LG TRLGR+VSA                  
Sbjct: 67  QGWRIAFALDTGGLPGNGGQENVNGDSPPGLGGTRLGRIVSAGGRQLLEKLNSARKNFPM 126

Query: 123 -----------ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKSLI 172
                      ANALATILGQTGDWDVLVAG+VVAAIE IG+LMYKKP  L TRRL+  +
Sbjct: 127 KIFLLLLGFYTANALATILGQTGDWDVLVAGIVVAAIEGIGMLMYKKPSSLSTRRLQYFV 186

[Close]

BLAST of Cp4.1LG00g01450 vs. TrEMBL
Match: A0A0B0NWY9_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_23472 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.1e-38
Identity = 104/199 (52.26%), Postives = 124/199 (62.31%), Query Frame = 1


Query: 6   MQSRLLTIANYISKGLCLTYMPCLIHNMGYVAILNGHNSTLCLKSVPFPRK----RHLQQ 65
           +Q+ L    N +    CLT   C I        L+G +S + LKS+ FPRK    RH  +
Sbjct: 14  LQAGLSISENDVFASSCLTLATCAIQRWSNEYSLSGQSSKIGLKSLTFPRKSSTKRHGWK 73

Query: 66  LAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSA---------------------- 125
           +A ALDTGGV  NG  D+L+  + SNLG TRLGR+VSA                      
Sbjct: 74  IALALDTGGVPGNGE-DSLNS-DSSNLGGTRLGRIVSAGGRQLLEKLNSARKNFPMKIFL 133

Query: 126 -------ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKSLIVLIN 172
                  ANALATILGQTGDWDVLVAGVVVAAIE IG+LMY+K P L T RL+S++V++N
Sbjct: 134 LLLGFYTANALATILGQTGDWDVLVAGVVVAAIEGIGMLMYRKSPSLKTGRLQSIVVMVN 193

[Close]

BLAST of Cp4.1LG00g01450 vs. TAIR10
Match: AT1G65420.1 (AT1G65420.1 Protein of unknown function (DUF565))

HSP 1 Score: 131.3 bits (329), Expect = 5.5e-31
Identity = 80/164 (48.78%), Postives = 101/164 (61.59%), Query Frame = 1


Query: 44  STLCLKSVPFPRK-----RHLQQLAFALDTGGVSSNGGGDNLD-DGNESNLGRTRLGRLV 103
           S++ L S P+P K     R  +++AFALDTG       G+  + +G+ + LG TRLGR+ 
Sbjct: 34  SSITLTSFPYPMKSFQIRRPNRKIAFALDTGSSIPGDSGEGQEMNGDRTGLGSTRLGRIA 93

Query: 104 SA-----------------------------ANALATILGQTGDWDVLVAGVVVAAIEWI 163
            A                             ANALATILGQTGDWDVLVAG+VVAAIE I
Sbjct: 94  IAGGKQLLGKINSARKNFPMKIFLLLLGFYTANALATILGQTGDWDVLVAGIVVAAIEGI 153

Query: 164 GILMYKKP-PPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS 172
           G+LMYKKP   + + +L+S +V +N+WKAGVCLGLFVDAFKLGS
Sbjct: 154 GMLMYKKPSSSMFSGKLQSFVVFMNFWKAGVCLGLFVDAFKLGS 197

[Close]

BLAST of Cp4.1LG00g01450 vs. TAIR10
Match: AT3G56830.1 (AT3G56830.1 Protein of unknown function (DUF565))

HSP 1 Score: 79.7 bits (195), Expect = 1.9e-15
Identity = 37/70 (52.86%), Postives = 51/70 (72.86%), Query Frame = 1


Query: 99  AANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGV 158
           +A A +T +GQTGDWDVL AG+ V  +E IG LMY+   PL+  +++S I + NYWK G+
Sbjct: 119 SATAFSTFIGQTGDWDVLSAGLAVLVVECIGALMYRASIPLI-NKMRSTITMFNYWKTGL 178

Query: 159 CLGLFVDAFK 169
            LGLF+D+FK
Sbjct: 179 ALGLFLDSFK 187

[Close]

BLAST of Cp4.1LG00g01450 vs. NCBI nr
Match: gi|449442657|ref|XP_004139097.1| (PREDICTED: ycf20-like protein [Cucumis sativus])

HSP 1 Score: 257.3 bits (656), Expect = 1.9e-65
Identity = 139/205 (67.80%), Postives = 153/205 (74.63%), Query Frame = 1


Query: 1   MEAMIMQSRLLTIANYISKGLCLTYMPCLIHNMGYVAILNGHNSTLCLKSVPFPRK---- 60
           M A+I+ SRLLT ANY  +  CLT MPCLIH  GY AI NG +S+  LKS PFPRK    
Sbjct: 8   MGAVILHSRLLTTANYSPQVSCLTNMPCLIHYWGYEAIFNGRSSSFLLKSAPFPRKSLQT 67

Query: 61  -RHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSA---------------- 120
            RH+ +LAFALDTGGVSS+GGGDN+DDG+ESNLGRTRLGRLVS+                
Sbjct: 68  SRHVNKLAFALDTGGVSSSGGGDNIDDGDESNLGRTRLGRLVSSGARQLLEKLNSARKNF 127

Query: 121 -------------ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKS 172
                        ANALATILGQTGDWDVLVAGVVVAAIEWIGILMY+KPPPLLTRRLKS
Sbjct: 128 PTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTRRLKS 187

[Close]

BLAST of Cp4.1LG00g01450 vs. NCBI nr
Match: gi|659086607|ref|XP_008444023.1| (PREDICTED: ycf20-like protein [Cucumis melo])

HSP 1 Score: 198.4 bits (503), Expect = 1.0e-47
Identity = 104/148 (70.27%), Postives = 114/148 (77.03%), Query Frame = 1


Query: 53  FPRKRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSA------------- 112
           F   RH+ ++AFALDTGGVSS+GGGDN+DDG+ESNLGRTRLGRLVS+             
Sbjct: 70  FQTSRHVNKIAFALDTGGVSSSGGGDNVDDGDESNLGRTRLGRLVSSGARQLLEKLNSAR 129

Query: 113 ----------------ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRR 172
                           ANALATILGQTGDWDVLVAGVVVAAIEWIGILMY+KPPPLLTRR
Sbjct: 130 KNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTRR 189

[Close]

BLAST of Cp4.1LG00g01450 vs. NCBI nr
Match: gi|590637811|ref|XP_007029223.1| (Uncharacterized protein TCM_025117 [Theobroma cacao])

HSP 1 Score: 175.6 bits (444), Expect = 7.2e-41
Identity = 106/203 (52.22%), Postives = 127/203 (62.56%), Query Frame = 1


Query: 4   MIMQSRLLTIANYISKGLCLTYMPCLIHNMGYVAILNGHNSTLCLKSVPFP------RKR 63
           M +Q+ L  + N + +  C+T   C I        + G  S + LKS  FP      RKR
Sbjct: 8   MYLQAGLSILENEVLESSCMTLATCAIQRWIIEPSICGQASKIGLKSALFPKKSFSTRKR 67

Query: 64  HLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSA------------------ 123
           H  ++AFALDTGGVS +GG D+L+  + SNLG TRLGR+VSA                  
Sbjct: 68  HGWKIAFALDTGGVSGDGGEDSLNS-DSSNLGGTRLGRIVSAGSRQLLEKLNSARKNFPM 127

Query: 124 -----------ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKSLI 172
                      ANALATILGQTGDWDVLVAGVVVAAIE IG+LMY+KPP L T RL+S +
Sbjct: 128 KVFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEGIGMLMYRKPPSLKTGRLQSFV 187

[Close]

BLAST of Cp4.1LG00g01450 vs. NCBI nr
Match: gi|802724674|ref|XP_012085809.1| (PREDICTED: ycf20-like protein [Jatropha curcas])

HSP 1 Score: 169.9 bits (429), Expect = 4.0e-39
Identity = 100/205 (48.78%), Postives = 126/205 (61.46%), Query Frame = 1


Query: 1   MEAMIMQSRLLTIANYISKGLCLTYMPCLIHNMGYVAILNGHNSTLCLKSVPFPRKRHLQ 60
           +E  +++S LL +   +SK  C+ +  C + N       +G  S + +   PF ++R   
Sbjct: 5   LEFRMLRSGLLAMETEVSKRSCINHATCAMQNWSVAPNFSGQTSKIGVNFPPFLKQRFQL 64

Query: 61  Q-----LAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSA---------------- 120
           +     + FALDTGG++ NGG +NLD G+ S LG TRLGR+VSA                
Sbjct: 65  RRCDWRIPFALDTGGIAGNGGPENLD-GDSSGLGGTRLGRIVSAGSRQLLQKLNSARKNF 124

Query: 121 -------------ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKS 172
                        ANALATILGQTGDWDVLVAGVVVAAIE IG+LMYKKP  L T RL+S
Sbjct: 125 PMKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEGIGMLMYKKPTSLSTGRLQS 184

[Close]

BLAST of Cp4.1LG00g01450 vs. NCBI nr
Match: gi|566182858|ref|XP_002312200.2| (hypothetical protein POPTR_0008s07660g [Populus trichocarpa])

HSP 1 Score: 169.1 bits (427), Expect = 6.8e-39
Identity = 98/203 (48.28%), Postives = 124/203 (61.08%), Query Frame = 1


Query: 3   AMIMQSRLLTIANYISKGLCLTYMPCLIHNMGYVAILNGHNSTLCLKSVPFPR-----KR 62
           A ++QS L  + N +S+  C+T   C + N       +G  S + +K VPF +     +R
Sbjct: 7   ARMLQSGLSVMVNEVSERTCITIATCAMQNRNSEPSFSGQASKIGIKFVPFQKTRFQLRR 66

Query: 63  HLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSA------------------ 122
              ++AFALDTGG+  NGG +N++  +   LG TRLGR+VSA                  
Sbjct: 67  QGWRIAFALDTGGLPGNGGQENVNGDSPPGLGGTRLGRIVSAGGRQLLEKLNSARKNFPM 126

Query: 123 -----------ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKSLI 172
                      ANALATILGQTGDWDVLVAG+VVAAIE IG+LMYKKP  L TRRL+  +
Sbjct: 127 KIFLLLLGFYTANALATILGQTGDWDVLVAGIVVAAIEGIGMLMYKKPSSLSTRRLQYFV 186

The following BLAST results are available for this feature:

BLAST of Cp4.1LG00g01450 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YC20L_ARATH	9.8e-30	48.78	Ycf20-like protein OS=Arabidopsis thaliana GN=At1g65420 PE=2 SV=2	[more]
YCF20_MESVI	1.6e-11	56.58	Uncharacterized protein ycf20 OS=Mesostigma viride GN=ycf20 PE=3 SV=1	[more]
YCF20_PORPU	3.6e-08	45.83	Uncharacterized protein ycf20 OS=Porphyra purpurea GN=ycf20 PE=3 SV=1	[more]
YCF20_PYRYE	8.1e-08	44.44	Uncharacterized protein ycf20 OS=Pyropia yezoensis GN=ycf20 PE=3 SV=1	[more]
YCF20_GALSU	9.9e-06	36.00	Uncharacterized protein ycf20 OS=Galdieria sulphuraria GN=ycf20 PE=3 SV=1	[more]

BLAST of Cp4.1LG00g01450 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXR2_CUCSA	1.3e-65	67.80	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G652280 PE=4 SV=1	[more]
A0A061EXE3_THECC	5.0e-41	52.22	Uncharacterized protein OS=Theobroma cacao GN=TCM_025117 PE=4 SV=1	[more]
A0A067JSH3_JATCU	2.8e-39	48.78	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18069 PE=4 SV=1	[more]
B9HHY4_POPTR	4.7e-39	48.28	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s07660g PE=4 SV=2	[more]
A0A0B0NWY9_GOSAR	1.1e-38	52.26	Uncharacterized protein OS=Gossypium arboreum GN=F383_23472 PE=4 SV=1	[more]

BLAST of Cp4.1LG00g01450 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G65420.1	5.5e-31	48.78	Protein of unknown function (DUF565)	[more]
AT3G56830.1	1.9e-15	52.86	Protein of unknown function (DUF565)	[more]

BLAST of Cp4.1LG00g01450 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449442657\|ref\|XP_004139097.1\|	1.9e-65	67.80	PREDICTED: ycf20-like protein [Cucumis sativus]	[more]
gi\|659086607\|ref\|XP_008444023.1\|	1.0e-47	70.27	PREDICTED: ycf20-like protein [Cucumis melo]	[more]
gi\|590637811\|ref\|XP_007029223.1\|	7.2e-41	52.22	Uncharacterized protein TCM_025117 [Theobroma cacao]	[more]
gi\|802724674\|ref\|XP_012085809.1\|	4.0e-39	48.78	PREDICTED: ycf20-like protein [Jatropha curcas]	[more]
gi\|566182858\|ref\|XP_002312200.2\|	6.8e-39	48.28	hypothetical protein POPTR_0008s07660g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007572	Uncharacterised_Ycf20

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0010196	nonphotochemical quenching
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG00g01450.1	Cp4.1LG00g01450.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007572	Uncharacterised protein family Ycf20	PFAM	PF04483	DUF565	coord: 109..171 score: 1.7
None	No IPR available	PANTHER	PTHR33787	FAMILY NOT NAMED	coord: 1..171 score: 1.1
None	No IPR available	PANTHER	PTHR33787:SF4	YCF20-LIKE PROTEIN	coord: 1..171 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG00g01450	Cucsa.356420	Cucumber (Gy14) v1	cgycpeB0927
Cp4.1LG00g01450	CmaCh11G009250	Cucurbita maxima (Rimu)	cmacpeB103
Cp4.1LG00g01450	CmoCh11G009470	Cucurbita moschata (Rifu)	cmocpeB079
Cp4.1LG00g01450	Cla009511	Watermelon (97103) v1	cpewmB006
Cp4.1LG00g01450	Csa1G652280	Cucumber (Chinese Long) v2	cpecuB000
Cp4.1LG00g01450	MELO3C010023	Melon (DHL92) v3.5.1	cpemeB007
Cp4.1LG00g01450	ClCG03G010340	Watermelon (Charleston Gray)	cpewcgB012
Cp4.1LG00g01450	CSPI01G32020	Wild cucumber (PI 183967)	cpecpiB000
Cp4.1LG00g01450	Lsi06G006760	Bottle gourd (USVL1VR-Ls)	cpelsiB017
Cp4.1LG00g01450	MELO3C010023.2	Melon (DHL92) v3.6.1	cpemedB008
Cp4.1LG00g01450	CsaV3_1G044300	Cucumber (Chinese Long) v3	cpecucB0000
Cp4.1LG00g01450	Bhi02G001108	Wax gourd	cpewgoB0019
Cp4.1LG00g01450	CsGy1G031030	Cucumber (Gy14) v2	cgybcpeB002
Cp4.1LG00g01450	Carg22715	Silver-seed gourd	carcpeB0756

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG00g01450	Wax gourd	cpewgoB0018
Cp4.1LG00g01450	Cucurbita pepo (Zucchini)	cpecpeB006
Cp4.1LG00g01450	Cucurbita maxima (Rimu)	cmacpeB070
Cp4.1LG00g01450	Cucurbita moschata (Rifu)	cmocpeB042
Cp4.1LG00g01450	Silver-seed gourd	carcpeB1340