Carg22715-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22715-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	ycf20-like protein
Location	Cucurbita_argyrosperma_scaffold_230 : 267202 .. 269152 (-)
Sequence length	507

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATGCAACACAAAGAATCGCTGTGTCAGTGATGTGTGTGCAACGAAACAGATTTTGTGACACAACTTCTACCTTCCAATGTATCAACAAATTTTTCCAGAGTGCGCAATGATGACTGTTAACCACCTCGTCCCTTTATCGTTTTTGCACGTCCCATTTCGTCCGCTATGGGTTTTCGTTCTCGGCGCTATCAATCTCCCAGCCCCCTCTTATTCAGTGTGTTTTCCGCAAGACTTTTTATTGTACATTTCTGCAGTCTTCGAAAAATGTGCAATTTGTATTTCTGCTCTGAATTTGTTGTGATTAATTGCTCACTGCGGCAGCGCAAACCTTGCATATAGAATACTCCTCCGAACAATACTTGAATGCTCACAGTTATGCGTCTACGTGAGTTTGGCGATATTTATTCTGCGCTTCCGCACCTTATTTACCTCATCGAAACGCACAACTTGATAATACTGAGCATGGATGCACACATATATTTCATGGCCACTGTTGATAATCCCTACGCTGTACAAGGGGTAGCCATTCTTCGAGAACATTCTGAAACTTATTGTACTATAATTAGTTTTGTATTAACAACTCGTTAGAGATCCTGCGTGCTCACTTGCATCGTATGGAGTTATGTGTTTAGTACAAAGCAAGGTCGATACTATCATGATTGCGACTATGATTTGTGTCAGTCTGAGTGTCAATCCTCTCAAGCGTTGTTTGCTTAGATAAACCACTGTCTTGCGCGAAGTTACTTTGGTGAGGTTATCGACGTCTCTCGCACGATCGTAGTAAATAGAGTGATATACAGAATTATTGTCTCTCCAAAGGAGTTTAATGCTCGGCCAGACATGACGGTATTTCACTCTTGCCTTATATGATGTGGTTACATTAGGTATTCATTCTCCTCGTGAGTTATTCAACTCTGTGCGTCTATTCCACTGATCGTGCATTATACTCAACTTCTCGCAATACATAGATCTACGAATGGGCTCTATTCTAATTGGTTCTACCTCTTTATCACGTTGTCGTTAATGAACCTATGCTATTCTTCTTGCAATATTTCATTTCTGTAGCTTGGAGAACTAGTAGGTCCACAAATCATGTCTTCTAACTAGTATTTGGCATGAAAACTAAAGTTTGTTGAGGCACAGAAGTTAAGGCTCGGAGAGCGAATAGTAGTAGCACTTCTAGAACAGAGGTGTATCGCAACTCAATTTTGAGGGATTTGGGTGAGGTGCTACTTATTTTATACATCCTGCATCTTGTGATAGCGTCCTTCGTTTTAATTTACTACCACTACCTCTCGCGACTTAGACCATTGAAAATTGCTCTGCCTCGTCACTTACGTAATAGGGTCGTTTCTGATAGTTTCTCTCACTAGATTCGTACTCTTCATTCTTTCATTTTTCTATATAAAAGTTTTTTTTTTTTTCTTATTTAAAAGAAGAAAAGTAAACTCCGTATCGTTGCTGTTATGAACATTTGGTTGTGATGTTACTTTTTACAGTTTCCGGACGAGTAGACATCTACAACAATTAGCCTTTGCATTAGACACAGGTGGGGTATCTAGTAACGGTGGGGGAGACAACCTTGATGATGGTAATGAGTCGAATCTGGGTCGTACTCGATTAGGCAGGCTAGTTAGCGCAGGTGCCAGACAGTTGCTGGAAAAACTAAACTCAGCTAGAAAGAACTTTCCTACAAAGATATTTTTGCTTCTTTTGGGTTTCTATACAGCCAATGCTCTTGCTACAATTCTTGGGCAGACGGGTGACTGGGATGTTTTGGTTGCTGGTGTGGTGGTTGCTGCCATTGAATGGATTGGTATACTCATGTACAAGAAGCCACCACCTCTATTAACTAGGAGGTTGAAATCATTAATAGTACTGATAAACTATTGGAAAGCCGGCGTATGCTTAGGCCTCTTCGTCGATGCGTTCAAATTGGGGAGTTGA

mRNA sequence

ATGTATGCAACACAAAGAATCGCTGTGTCAGTGATGTGTGTGCAACGAAACAGATTTTGTGACACAACTTCTACCTTCCAATCGCAAACCTTGCATATAGAATACTCCTCCGAACAATACTTGAATGCTCACAGTTATGCGTCTACTTTCCGGACGAGTAGACATCTACAACAATTAGCCTTTGCATTAGACACAGGTGGGGTATCTAGTAACGGTGGGGGAGACAACCTTGATGATGGTAATGAGTCGAATCTGGGTCGTACTCGATTAGGCAGGCTAGTTAGCGCAGCCAATGCTCTTGCTACAATTCTTGGGCAGACGGGTGACTGGGATGTTTTGGTTGCTGGTGTGGTGGTTGCTGCCATTGAATGGATTGGTATACTCATGTACAAGAAGCCACCACCTCTATTAACTAGGAGGTTGAAATCATTAATAGTACTGATAAACTATTGGAAAGCCGGCGTATGCTTAGGCCTCTTCGTCGATGCGTTCAAATTGGGGAGTTGA

Coding sequence (CDS)

ATGTATGCAACACAAAGAATCGCTGTGTCAGTGATGTGTGTGCAACGAAACAGATTTTGTGACACAACTTCTACCTTCCAATCGCAAACCTTGCATATAGAATACTCCTCCGAACAATACTTGAATGCTCACAGTTATGCGTCTACTTTCCGGACGAGTAGACATCTACAACAATTAGCCTTTGCATTAGACACAGGTGGGGTATCTAGTAACGGTGGGGGAGACAACCTTGATGATGGTAATGAGTCGAATCTGGGTCGTACTCGATTAGGCAGGCTAGTTAGCGCAGCCAATGCTCTTGCTACAATTCTTGGGCAGACGGGTGACTGGGATGTTTTGGTTGCTGGTGTGGTGGTTGCTGCCATTGAATGGATTGGTATACTCATGTACAAGAAGCCACCACCTCTATTAACTAGGAGGTTGAAATCATTAATAGTACTGATAAACTATTGGAAAGCCGGCGTATGCTTAGGCCTCTTCGTCGATGCGTTCAAATTGGGGAGTTGA

Protein sequence

MYATQRIAVSVMCVQRNRFCDTTSTFQSQTLHIEYSSEQYLNAHSYASTFRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS

Homology

[Close]

BLAST of Carg22715-RA vs. NCBI nr
Match: XP_022924878.1 (ycf20-like protein [Cucurbita moschata] >XP_022924885.1 ycf20-like protein [Cucurbita moschata] >XP_022924895.1 ycf20-like protein [Cucurbita moschata] >XP_022924902.1 ycf20-like protein [Cucurbita moschata] >XP_022924910.1 ycf20-like protein [Cucurbita moschata] >XP_022924918.1 ycf20-like protein [Cucurbita moschata])

HSP 1 Score: 218.4 bits (555), Expect = 1.9e-53
Identity = 119/149 (79.87%), Postives = 120/149 (80.54%), Query Frame = 0


Query: 49  TFRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSA------------ 108
           +FRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSA            
Sbjct: 57  SFRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSA 116

Query: 109 -----------------ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTR 168
                            ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTR
Sbjct: 117 RKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTR 176

[Close]

BLAST of Carg22715-RA vs. NCBI nr
Match: XP_022973215.1 (ycf20-like protein [Cucurbita maxima] >XP_022973224.1 ycf20-like protein [Cucurbita maxima] >XP_022973228.1 ycf20-like protein [Cucurbita maxima] >XP_022973233.1 ycf20-like protein [Cucurbita maxima] >XP_022973241.1 ycf20-like protein [Cucurbita maxima] >XP_022973250.1 ycf20-like protein [Cucurbita maxima])

HSP 1 Score: 218.4 bits (555), Expect = 1.9e-53
Identity = 119/149 (79.87%), Postives = 120/149 (80.54%), Query Frame = 0


Query: 49  TFRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSA------------ 108
           +FRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSA            
Sbjct: 57  SFRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSA 116

Query: 109 -----------------ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTR 168
                            ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTR
Sbjct: 117 RKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTR 176

[Close]

BLAST of Carg22715-RA vs. NCBI nr
Match: XP_023520636.1 (ycf20-like protein [Cucurbita pepo subsp. pepo] >XP_023520637.1 ycf20-like protein [Cucurbita pepo subsp. pepo] >XP_023520638.1 ycf20-like protein [Cucurbita pepo subsp. pepo] >XP_023520639.1 ycf20-like protein [Cucurbita pepo subsp. pepo] >XP_023520640.1 ycf20-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 218.4 bits (555), Expect = 1.9e-53
Identity = 119/149 (79.87%), Postives = 120/149 (80.54%), Query Frame = 0


Query: 49  TFRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSA------------ 108
           +FRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSA            
Sbjct: 57  SFRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSAGARQLLEKLNSA 116

Query: 109 -----------------ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTR 168
                            ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTR
Sbjct: 117 RKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTR 176

[Close]

BLAST of Carg22715-RA vs. NCBI nr
Match: XP_008444023.1 (PREDICTED: ycf20-like protein [Cucumis melo])

HSP 1 Score: 201.1 bits (510), Expect = 3.1e-48
Identity = 106/148 (71.62%), Postives = 117/148 (79.05%), Query Frame = 0


Query: 50  FRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSA------------- 109
           F+TSRH+ ++AFALDTGGVSS+GGGDN+DDG+ESNLGRTRLGRLVS+             
Sbjct: 70  FQTSRHVNKIAFALDTGGVSSSGGGDNVDDGDESNLGRTRLGRLVSSGARQLLEKLNSAR 129

Query: 110 ----------------ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRR 169
                           ANALATILGQTGDWDVLVAGVVVAAIEWIGILMY+KPPPLLTRR
Sbjct: 130 KNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTRR 189

[Close]

BLAST of Carg22715-RA vs. NCBI nr
Match: XP_004139097.1 (PREDICTED: ycf20-like protein [Cucumis sativus] >XP_011660206.1 PREDICTED: ycf20-like protein [Cucumis sativus] >XP_011660207.1 PREDICTED: ycf20-like protein [Cucumis sativus] >KGN66645.1 hypothetical protein Csa_1G652280 [Cucumis sativus])

HSP 1 Score: 200.3 bits (508), Expect = 5.2e-48
Identity = 106/149 (71.14%), Postives = 117/149 (78.52%), Query Frame = 0


Query: 49  TFRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSA------------ 108
           + +TSRH+ +LAFALDTGGVSS+GGGDN+DDG+ESNLGRTRLGRLVS+            
Sbjct: 64  SLQTSRHVNKLAFALDTGGVSSSGGGDNIDDGDESNLGRTRLGRLVSSGARQLLEKLNSA 123

Query: 109 -----------------ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTR 168
                            ANALATILGQTGDWDVLVAGVVVAAIEWIGILMY+KPPPLLTR
Sbjct: 124 RKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTR 183

[Close]

BLAST of Carg22715-RA vs. TAIR10
Match: AT1G65420.1 (Protein of unknown function (DUF565))

HSP 1 Score: 124.8 bits (312), Expect = 5.1e-29
Identity = 75/151 (49.67%), Postives = 95/151 (62.91%), Query Frame = 0


Query: 49  TFRTSRHLQQLAFALDTGGVSSNGGGDNLD-DGNESNLGRTRLGRLVSA----------- 108
           +F+  R  +++AFALDTG       G+  + +G+ + LG TRLGR+  A           
Sbjct: 47  SFQIRRPNRKIAFALDTGSSIPGDSGEGQEMNGDRTGLGSTRLGRIAIAGGKQLLGKINS 106

Query: 109 ------------------ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKP-PPLL 168
                             ANALATILGQTGDWDVLVAG+VVAAIE IG+LMYKKP   + 
Sbjct: 107 ARKNFPMKIFLLLLGFYTANALATILGQTGDWDVLVAGIVVAAIEGIGMLMYKKPSSSMF 166

[Close]

BLAST of Carg22715-RA vs. TAIR10
Match: AT3G56830.1 (Protein of unknown function (DUF565))

HSP 1 Score: 79.7 bits (195), Expect = 1.9e-15
Identity = 37/70 (52.86%), Postives = 51/70 (72.86%), Query Frame = 0


Query: 96  AANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGV 155
           +A A +T +GQTGDWDVL AG+ V  +E IG LMY+   PL+  +++S I + NYWK G+
Sbjct: 119 SATAFSTFIGQTGDWDVLSAGLAVLVVECIGALMYRASIPLI-NKMRSTITMFNYWKTGL 178

Query: 156 CLGLFVDAFK 166
            LGLF+D+FK
Sbjct: 179 ALGLFLDSFK 187

[Close]

BLAST of Carg22715-RA vs. Swiss-Prot
Match: sp|O80813|YC20L_ARATH (Ycf20-like protein OS=Arabidopsis thaliana OX=3702 GN=At1g65420 PE=2 SV=2)

HSP 1 Score: 124.8 bits (312), Expect = 9.1e-28
Identity = 75/151 (49.67%), Postives = 95/151 (62.91%), Query Frame = 0


Query: 49  TFRTSRHLQQLAFALDTGGVSSNGGGDNLD-DGNESNLGRTRLGRLVSA----------- 108
           +F+  R  +++AFALDTG       G+  + +G+ + LG TRLGR+  A           
Sbjct: 47  SFQIRRPNRKIAFALDTGSSIPGDSGEGQEMNGDRTGLGSTRLGRIAIAGGKQLLGKINS 106

Query: 109 ------------------ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKP-PPLL 168
                             ANALATILGQTGDWDVLVAG+VVAAIE IG+LMYKKP   + 
Sbjct: 107 ARKNFPMKIFLLLLGFYTANALATILGQTGDWDVLVAGIVVAAIEGIGMLMYKKPSSSMF 166

[Close]

BLAST of Carg22715-RA vs. Swiss-Prot
Match: sp|Q9MUL5|YCF20_MESVI (Uncharacterized protein ycf20 OS=Mesostigma viride OX=41882 GN=ycf20 PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.6e-11
Identity = 43/76 (56.58%), Postives = 49/76 (64.47%), Query Frame = 0


Query: 97  ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKK----PPPLLTRRLKSLIVLINYWK 156
           A  LAT+ GQTGDWDVLVAG++VA IE +G  MY K       +      SLI  INY K
Sbjct: 42  ATVLATVFGQTGDWDVLVAGILVAMIEILGNKMYSKKYISKKQVFDISFLSLIG-INYIK 101

Query: 157 AGVCLGLFVDAFKLGS 169
            G+  GLFVDAFKLGS
Sbjct: 102 IGLIFGLFVDAFKLGS 116

[Close]

BLAST of Carg22715-RA vs. Swiss-Prot
Match: sp|P51214|YCF20_PORPU (Uncharacterized protein ycf20 OS=Porphyra purpurea OX=2787 GN=ycf20 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.6e-08
Identity = 33/72 (45.83%), Postives = 44/72 (61.11%), Query Frame = 0


Query: 97  ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGVC 156
           +  L+TI GQTGDW ++ A ++VAAIE +  ++Y        R     I L+N  K G+ 
Sbjct: 42  STGLSTIPGQTGDWGIIAASLIVAAIELVSKIVYSNKKKYGVR-----INLLNNLKIGIT 101

Query: 157 LGLFVDAFKLGS 169
            GLFVDAFKLGS
Sbjct: 102 YGLFVDAFKLGS 108

[Close]

BLAST of Carg22715-RA vs. Swiss-Prot
Match: sp|Q1XDS2|YCF20_PYRYE (Uncharacterized protein ycf20 OS=Pyropia yezoensis OX=2788 GN=ycf20 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 8.0e-08
Identity = 32/72 (44.44%), Postives = 44/72 (61.11%), Query Frame = 0


Query: 97  ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGVC 156
           +  L+TI GQTGDW ++ A ++VAA E    ++Y        ++L   I L N +K G+ 
Sbjct: 42  STGLSTIPGQTGDWGIIAASLIVAATELTSKIVYSS-----HKQLNIKINLFNNFKIGIT 101

Query: 157 LGLFVDAFKLGS 169
            GLFVDAFKLGS
Sbjct: 102 YGLFVDAFKLGS 108

[Close]

BLAST of Carg22715-RA vs. Swiss-Prot
Match: sp|P48409|YCF20_GALSU (Uncharacterized protein ycf20 OS=Galdieria sulphuraria OX=130081 GN=ycf20 PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 9.8e-06
Identity = 27/75 (36.00%), Postives = 44/75 (58.67%), Query Frame = 0


Query: 94  VSAANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKA 153
           + ++N L TI  QTGDW + +   ++A  E I  + Y +    + +  K++I   N +K 
Sbjct: 12  IFSSNLLCTIYTQTGDWSLYLTSCIIALYEIISYISYNQ---FIKKTHKNIINCFNGFKI 71

Query: 154 GVCLGLFVDAFKLGS 169
           G+  GL++DAFKLGS
Sbjct: 72  GLIYGLYLDAFKLGS 83

[Close]

BLAST of Carg22715-RA vs. TrEMBL
Match: tr|A0A1S3B8Z3|A0A1S3B8Z3_CUCME (ycf20-like protein OS=Cucumis melo OX=3656 GN=LOC103487471 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 2.0e-48
Identity = 106/148 (71.62%), Postives = 117/148 (79.05%), Query Frame = 0


Query: 50  FRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSA------------- 109
           F+TSRH+ ++AFALDTGGVSS+GGGDN+DDG+ESNLGRTRLGRLVS+             
Sbjct: 70  FQTSRHVNKIAFALDTGGVSSSGGGDNVDDGDESNLGRTRLGRLVSSGARQLLEKLNSAR 129

Query: 110 ----------------ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRR 169
                           ANALATILGQTGDWDVLVAGVVVAAIEWIGILMY+KPPPLLTRR
Sbjct: 130 KNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTRR 189

[Close]

BLAST of Carg22715-RA vs. TrEMBL
Match: tr|A0A0A0LXR2|A0A0A0LXR2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G652280 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 3.5e-48
Identity = 106/149 (71.14%), Postives = 117/149 (78.52%), Query Frame = 0


Query: 49  TFRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSA------------ 108
           + +TSRH+ +LAFALDTGGVSS+GGGDN+DDG+ESNLGRTRLGRLVS+            
Sbjct: 64  SLQTSRHVNKLAFALDTGGVSSSGGGDNIDDGDESNLGRTRLGRLVSSGARQLLEKLNSA 123

Query: 109 -----------------ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTR 168
                            ANALATILGQTGDWDVLVAGVVVAAIEWIGILMY+KPPPLLTR
Sbjct: 124 RKNFPTKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEWIGILMYRKPPPLLTR 183

[Close]

BLAST of Carg22715-RA vs. TrEMBL
Match: tr|M5WCV3|M5WCV3_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G364400 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 2.6e-35
Identity = 94/173 (54.34%), Postives = 113/173 (65.32%), Query Frame = 0


Query: 25  TFQSQTLHIEYSSEQYLNAHSYASTFRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESN 84
           +F  QT  I   S  +L       +F ++RH  ++AFALDTGGV  NGG + + DGN S+
Sbjct: 39  SFIRQTSKIGIKSVPFLQ-----RSFHSTRHQWRIAFALDTGGVPDNGGQEGI-DGNSSD 98

Query: 85  LGRTRLGRLVSA-----------------------------ANALATILGQTGDWDVLVA 144
           L RTRLGR+V+A                             ANALATILGQTGDWDVLVA
Sbjct: 99  LNRTRLGRIVTAGGRQLLEKLNIARKNFPMKIFLLLLGFYTANALATILGQTGDWDVLVA 158

Query: 145 GVVVAAIEWIGILMYKKPPPLLTRRLKSLIVLINYWKAGVCLGLFVDAFKLGS 169
           G+VVAAIE IG+LMY+KPP   + RLKSL+++INYWKAGVCLGLFVDAFKLGS
Sbjct: 159 GIVVAAIEGIGMLMYRKPPSQSSGRLKSLVMMINYWKAGVCLGLFVDAFKLGS 205

[Close]

BLAST of Carg22715-RA vs. TrEMBL
Match: tr|A0A2N9HB14|A0A2N9HB14_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS36835 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 3.4e-35
Identity = 91/148 (61.49%), Postives = 104/148 (70.27%), Query Frame = 0


Query: 50  FRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSA------------- 109
           F+T RH  ++AFALDTGG+ SNGG ++L +GN  +LGRTRLGR+VSA             
Sbjct: 34  FQTKRHGWKIAFALDTGGIPSNGGQESL-NGNGPDLGRTRLGRIVSAGGRQLLEKLNSAR 93

Query: 110 ----------------ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRR 169
                           ANALATILGQTGDWDVLVAGVVVAAIE IG+LMY+KP  L T R
Sbjct: 94  KNFPMKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEGIGMLMYRKPSSLSTGR 153

[Close]

BLAST of Carg22715-RA vs. TrEMBL
Match: tr|A0A2N9FIG5|A0A2N9FIG5_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS18488 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 4.4e-35
Identity = 91/148 (61.49%), Postives = 104/148 (70.27%), Query Frame = 0


Query: 50  FRTSRHLQQLAFALDTGGVSSNGGGDNLDDGNESNLGRTRLGRLVSA------------- 109
           F+T RH  ++AFALDTGG+ SNGG ++L +GN  +LGRTRLGR+VSA             
Sbjct: 34  FQTRRHGWKIAFALDTGGIPSNGGQESL-NGNGPDLGRTRLGRIVSAGGRQLLEKLNSAR 93

Query: 110 ----------------ANALATILGQTGDWDVLVAGVVVAAIEWIGILMYKKPPPLLTRR 169
                           ANALATILGQTGDWDVLVAGVVVAAIE IG+LMY+KP  L T R
Sbjct: 94  KNFPMKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEGIGMLMYRKPSSLSTGR 153

The following BLAST results are available for this feature:

BLAST of Carg22715-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022924878.1	1.9e-53	79.87	ycf20-like protein [Cucurbita moschata] >XP_022924885.1 ycf20-like protein [Cucu...	[more]
XP_022973215.1	1.9e-53	79.87	ycf20-like protein [Cucurbita maxima] >XP_022973224.1 ycf20-like protein [Cucurb...	[more]
XP_023520636.1	1.9e-53	79.87	ycf20-like protein [Cucurbita pepo subsp. pepo] >XP_023520637.1 ycf20-like prote...	[more]
XP_008444023.1	3.1e-48	71.62	PREDICTED: ycf20-like protein [Cucumis melo]	[more]
XP_004139097.1	5.2e-48	71.14	PREDICTED: ycf20-like protein [Cucumis sativus] >XP_011660206.1 PREDICTED: ycf20...	[more]

BLAST of Carg22715-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT1G65420.1	5.1e-29	49.67	Protein of unknown function (DUF565)	[more]
AT3G56830.1	1.9e-15	52.86	Protein of unknown function (DUF565)	[more]

BLAST of Carg22715-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O80813\|YC20L_ARATH	9.1e-28	49.67	Ycf20-like protein OS=Arabidopsis thaliana OX=3702 GN=At1g65420 PE=2 SV=2	[more]
sp\|Q9MUL5\|YCF20_MESVI	1.6e-11	56.58	Uncharacterized protein ycf20 OS=Mesostigma viride OX=41882 GN=ycf20 PE=3 SV=1	[more]
sp\|P51214\|YCF20_PORPU	3.6e-08	45.83	Uncharacterized protein ycf20 OS=Porphyra purpurea OX=2787 GN=ycf20 PE=3 SV=1	[more]
sp\|Q1XDS2\|YCF20_PYRYE	8.0e-08	44.44	Uncharacterized protein ycf20 OS=Pyropia yezoensis OX=2788 GN=ycf20 PE=3 SV=1	[more]
sp\|P48409\|YCF20_GALSU	9.8e-06	36.00	Uncharacterized protein ycf20 OS=Galdieria sulphuraria OX=130081 GN=ycf20 PE=3 S...	[more]

BLAST of Carg22715-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B8Z3\|A0A1S3B8Z3_CUCME	2.0e-48	71.62	ycf20-like protein OS=Cucumis melo OX=3656 GN=LOC103487471 PE=4 SV=1	[more]
tr\|A0A0A0LXR2\|A0A0A0LXR2_CUCSA	3.5e-48	71.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G652280 PE=4 SV=1	[more]
tr\|M5WCV3\|M5WCV3_PRUPE	2.6e-35	54.34	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G364400 PE=4 SV=1	[more]
tr\|A0A2N9HB14\|A0A2N9HB14_FAGSY	3.4e-35	61.49	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS36835 PE=4 SV=1	[more]
tr\|A0A2N9FIG5\|A0A2N9FIG5_FAGSY	4.4e-35	61.49	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS18488 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR007572	Uncharacterised_Ycf20

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg22715	Carg22715	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg22715-RA	Carg22715-RA-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg22715-RA.CDS.4	Carg22715-RA.CDS.4	CDS
Carg22715-RA.CDS.3	Carg22715-RA.CDS.3	CDS
Carg22715-RA.CDS.2	Carg22715-RA.CDS.2	CDS
Carg22715-RA.CDS.1	Carg22715-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg22715-RA.exon.4	Carg22715-RA.exon.4	exon
Carg22715-RA.exon.3	Carg22715-RA.exon.3	exon
Carg22715-RA.exon.2	Carg22715-RA.exon.2	exon
Carg22715-RA.exon.1	Carg22715-RA.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007572	Uncharacterised protein family Ycf20	PFAM	PF04483	DUF565	coord: 106..168 e-value: 1.7E-21 score: 76.4
IPR007572	Uncharacterised protein family Ycf20	PANTHER	PTHR33787	FAMILY NOT NAMED	coord: 96..168
IPR007572	Uncharacterised protein family Ycf20	PANTHER	PTHR33787	FAMILY NOT NAMED	coord: 12..97
None	No IPR available	PANTHER	PTHR33787:SF4	YCF20-LIKE PROTEIN	coord: 96..168
None	No IPR available	PANTHER	PTHR33787:SF4	YCF20-LIKE PROTEIN	coord: 12..97