Carg18301 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg18301
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	psbQ-like protein 3, chloroplastic
Location	Cucurbita_argyrosperma_scaffold_120 : 573641 .. 574644 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCTTCTCGTTTCTATAAATAGACAGAGATCAGGATGAAGCCTCACTCTGTACTTCAATGGCGGAATTAAGCCCAATCTCAGTCTCGAACCTCAGTAATCGTATCCATTTCTCTTCTTCTTCTCCTCCTATAAACTCCTCCCAATTGTTCAGCATCACCGCCAAGCGTTGTAGCAATTGCAGAAGCATAAGCAGAAGATTAGGTCTGGGATTGATAGCTTTAATGGCGTCGTCGTCTGTAGCCTCGACGCCTGTGAGAATAGCGAATGCTTTGGATCTGAAATTGATAGCGCCGGAGCAGAGCTTCGAGGAGGCGGAGAGCGGAATCAGAGGCCATGCGGAAGCGGTTTTGCAGGTGAGAGGTTTAATTGAATCGGAGTCTTGGAAGGAAGCGCAGAAGCAGTTGAGAACCAGTTCGCCGCTGCTGAAACAGGATCTGTACACTATAATTGAATATAAACCGCCTGCCGAGCGACCTCCTCTCAGGAAACTCTATTCTCTTCTCTTCAACAATGTTACTCGAGTAAGTTTGATTTGATCGTTTGAAGCTTGACAATGCCTTAATGATCTTCTTCAATTCAACTCTTCTGTTCTTCAATTCAACTCTTCTGTTCTTCAATTCAACTCCTGTTCTTCAATTTTGACGATTTGCAGATGGATTATGCAGCGAGAGATAAAGATGCGGAACGAGTTCGGCAGTGCTACGATAACATTGAGATGGCCATTTCTGACATTTTATCCAGAATTTAGAAAGATAAACGAAGGTTCTCGATTCTCCAGCCAATGATCGTAATACTCTTTCCAATCTTTTGTTTTTCGATCTTATAACTTGGCATATAAACACAAAGTATTGGAAATAACATGTAGAATATAATGATGAACGTGCATTGCATACAATTTAGTGCCGAAGTTTGGATCTCAAATAGTGTTATCATCAAATAGATATCACAATCGTCACATTCAAACGTGCATATTCCTGGAGATTGTTCTTTGCAGAAAAAAGAA

mRNA sequence

AGCTTCTCGTTTCTATAAATAGACAGAGATCAGGATGAAGCCTCACTCTGTACTTCAATGGCGGAATTAAGCCCAATCTCAGTCTCGAACCTCAGTAATCGTATCCATTTCTCTTCTTCTTCTCCTCCTATAAACTCCTCCCAATTGTTCAGCATCACCGCCAAGCGTTGTAGCAATTGCAGAAGCATAAGCAGAAGATTAGGTCTGGGATTGATAGCTTTAATGGCGTCGTCGTCTGTAGCCTCGACGCCTGTGAGAATAGCGAATGCTTTGGATCTGAAATTGATAGCGCCGGAGCAGAGCTTCGAGGAGGCGGAGAGCGGAATCAGAGGCCATGCGGAAGCGGTTTTGCAGGTGAGAGGTTTAATTGAATCGGAGTCTTGGAAGGAAGCGCAGAAGCAGTTGAGAACCAGTTCGCCGCTGCTGAAACAGGATCTGTACACTATAATTGAATATAAACCGCCTGCCGAGCGACCTCCTCTCAGGAAACTCTATTCTCTTCTCTTCAACAATGTTACTCGAATGGATTATGCAGCGAGAGATAAAGATGCGGAACGAGTTCGGCAGTGCTACGATAACATTGAGATGGCCATTTCTGACATTTTATCCAGAATTTAGAAAGATAAACGAAGGTTCTCGATTCTCCAGCCAATGATCGTAATACTCTTTCCAATCTTTTGTTTTTCGATCTTATAACTTGGCATATAAACACAAAGTATTGGAAATAACATGTAGAATATAATGATGAACGTGCATTGCATACAATTTAGTGCCGAAGTTTGGATCTCAAATAGTGTTATCATCAAATAGATATCACAATCGTCACATTCAAACGTGCATATTCCTGGAGATTGTTCTTTGCAGAAAAAAGAA

Coding sequence (CDS)

ATGGCGGAATTAAGCCCAATCTCAGTCTCGAACCTCAGTAATCGTATCCATTTCTCTTCTTCTTCTCCTCCTATAAACTCCTCCCAATTGTTCAGCATCACCGCCAAGCGTTGTAGCAATTGCAGAAGCATAAGCAGAAGATTAGGTCTGGGATTGATAGCTTTAATGGCGTCGTCGTCTGTAGCCTCGACGCCTGTGAGAATAGCGAATGCTTTGGATCTGAAATTGATAGCGCCGGAGCAGAGCTTCGAGGAGGCGGAGAGCGGAATCAGAGGCCATGCGGAAGCGGTTTTGCAGGTGAGAGGTTTAATTGAATCGGAGTCTTGGAAGGAAGCGCAGAAGCAGTTGAGAACCAGTTCGCCGCTGCTGAAACAGGATCTGTACACTATAATTGAATATAAACCGCCTGCCGAGCGACCTCCTCTCAGGAAACTCTATTCTCTTCTCTTCAACAATGTTACTCGAATGGATTATGCAGCGAGAGATAAAGATGCGGAACGAGTTCGGCAGTGCTACGATAACATTGAGATGGCCATTTCTGACATTTTATCCAGAATTTAG

Protein sequence

MAELSPISVSNLSNRIHFSSSSPPINSSQLFSITAKRCSNCRSISRRLGLGLIALMASSSVASTPVRIANALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIESESWKEAQKQLRTSSPLLKQDLYTIIEYKPPAERPPLRKLYSLLFNNVTRMDYAARDKDAERVRQCYDNIEMAISDILSRI

Homology

[Close]

BLAST of Carg18301 vs. NCBI nr
Match: XP_022962345.1 (psbQ-like protein 3, chloroplastic isoform X1 [Cucurbita moschata])

HSP 1 Score: 348.6 bits (893), Expect = 1.3e-92
Identity = 185/186 (99.46%), Postives = 185/186 (99.46%), Query Frame = 0


Query: 1   MAELSPISVSNLSNRIHFSSSSPPINSSQLFSITAKRCSNCRSISRRLGLGLIALMASSS 60
           MAELSPISVSNLSNRIHFSSSSPPINSSQLFSITAKRCSNCRSISRRLGLGLIALMASSS
Sbjct: 1   MAELSPISVSNLSNRIHFSSSSPPINSSQLFSITAKRCSNCRSISRRLGLGLIALMASSS 60

Query: 61  VASTPVRIANALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIESESWKEAQKQLRTSS 120
           VASTPVRIANALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIESESWKEAQKQLRTSS
Sbjct: 61  VASTPVRIANALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIESESWKEAQKQLRTSS 120

Query: 121 PLLKQDLYTIIEYKPPAERPPLRKLYSLLFNNVTRMDYAARDKDAERVRQCYDNIEMAIS 180
           PLLKQDLYTIIEYKPPAERPPLRKLYSLLFNNVTRMDYAARDKDAERVRQCYDNI MAIS
Sbjct: 121 PLLKQDLYTIIEYKPPAERPPLRKLYSLLFNNVTRMDYAARDKDAERVRQCYDNIVMAIS 180

Query: 181 DILSRI 187
           DILSRI
Sbjct: 181 DILSRI 186

[Close]

BLAST of Carg18301 vs. NCBI nr
Match: XP_023551782.1 (psbQ-like protein 3, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 330.1 bits (845), Expect = 4.9e-87
Identity = 179/190 (94.21%), Postives = 182/190 (95.79%), Query Frame = 0


Query: 1   MAELSPISVSNLSNRIHFSSSSPPINSSQLFSITAKRCSNC----RSISRRLGLGLIALM 60
           MAELSPISVSNLSNRIHFSSSSPPI S QLFSITAKRCSNC    RSISRRLGLGLIALM
Sbjct: 1   MAELSPISVSNLSNRIHFSSSSPPIISVQLFSITAKRCSNCRSISRSISRRLGLGLIALM 60

Query: 61  ASSSVASTPVRIANALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIESESWKEAQKQL 120
           ASSSVASTPV+IANALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIESESWKEAQKQL
Sbjct: 61  ASSSVASTPVKIANALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIESESWKEAQKQL 120

Query: 121 RTSSPLLKQDLYTIIEYKPPAERPPLRKLYSLLFNNVTRMDYAARDKDAERVRQCYDNIE 180
           R+SSPLLKQDLYTIIEYKPPAERPPLR+LYSLLFNNVTRMDYAARDKDAERV QCYDNI 
Sbjct: 121 RSSSPLLKQDLYTIIEYKPPAERPPLRRLYSLLFNNVTRMDYAARDKDAERVWQCYDNIV 180

Query: 181 MAISDILSRI 187
           MAISDILSRI
Sbjct: 181 MAISDILSRI 190

[Close]

BLAST of Carg18301 vs. NCBI nr
Match: XP_022991100.1 (psbQ-like protein 3, chloroplastic isoform X1 [Cucurbita maxima])

HSP 1 Score: 327.0 bits (837), Expect = 4.1e-86
Identity = 176/186 (94.62%), Postives = 179/186 (96.24%), Query Frame = 0


Query: 1   MAELSPISVSNLSNRIHFSSSSPPINSSQLFSITAKRCSNCRSISRRLGLGLIALMASSS 60
           MAELSPISVSNLSNRIHF SSSPPI S QLFSITAKRCSNCRSISRRLGLG +ALMASSS
Sbjct: 1   MAELSPISVSNLSNRIHF-SSSPPIISFQLFSITAKRCSNCRSISRRLGLGFMALMASSS 60

Query: 61  VASTPVRIANALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIESESWKEAQKQLRTSS 120
           VASTPV+I NALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIESESWKEAQKQLR+SS
Sbjct: 61  VASTPVKITNALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIESESWKEAQKQLRSSS 120

Query: 121 PLLKQDLYTIIEYKPPAERPPLRKLYSLLFNNVTRMDYAARDKDAERVRQCYDNIEMAIS 180
           PLLKQDLYTIIEYKPPAERPPLRKLYSLLFNNVTRMDYAARDKDAERV QCYDNI MAIS
Sbjct: 121 PLLKQDLYTIIEYKPPAERPPLRKLYSLLFNNVTRMDYAARDKDAERVWQCYDNIVMAIS 180

Query: 181 DILSRI 187
           DILSRI
Sbjct: 181 DILSRI 185

[Close]

BLAST of Carg18301 vs. NCBI nr
Match: XP_022962354.1 (uncharacterized protein LOC111462819 isoform X2 [Cucurbita moschata])

HSP 1 Score: 292.7 bits (748), Expect = 8.6e-76
Identity = 156/163 (95.71%), Postives = 159/163 (97.55%), Query Frame = 0


Query: 1   MAELSPISVSNLSNRIHFSSSSPPINSSQLFSITAKRCSNCRSISRRLGLGLIALMASSS 60
           MAELSPISVSNLSNRIHFSSSSPPINSSQLFSITAKRCSNCRSISRRLGLGLIALMASSS
Sbjct: 1   MAELSPISVSNLSNRIHFSSSSPPINSSQLFSITAKRCSNCRSISRRLGLGLIALMASSS 60

Query: 61  VASTPVRIANALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIESESWKEAQKQLRTSS 120
           VASTPVRIANALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIESESWKEAQKQLRTSS
Sbjct: 61  VASTPVRIANALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIESESWKEAQKQLRTSS 120

Query: 121 PLLKQDLYTIIEYKPPAERPPLRKLYSLLFNNVTRMDYAARDK 164
           PLLKQDLYTIIEYKPPAERPPLRKLYSLLFNNVTR +   R++
Sbjct: 121 PLLKQDLYTIIEYKPPAERPPLRKLYSLLFNNVTRREIKMRNE 163

[Close]

BLAST of Carg18301 vs. NCBI nr
Match: XP_022991101.1 (uncharacterized protein LOC111487796 isoform X2 [Cucurbita maxima])

HSP 1 Score: 274.2 bits (700), Expect = 3.2e-70
Identity = 148/163 (90.80%), Postives = 154/163 (94.48%), Query Frame = 0


Query: 1   MAELSPISVSNLSNRIHFSSSSPPINSSQLFSITAKRCSNCRSISRRLGLGLIALMASSS 60
           MAELSPISVSNLSNRIHF SSSPPI S QLFSITAKRCSNCRSISRRLGLG +ALMASSS
Sbjct: 1   MAELSPISVSNLSNRIHF-SSSPPIISFQLFSITAKRCSNCRSISRRLGLGFMALMASSS 60

Query: 61  VASTPVRIANALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIESESWKEAQKQLRTSS 120
           VASTPV+I NALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIESESWKEAQKQLR+SS
Sbjct: 61  VASTPVKITNALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIESESWKEAQKQLRSSS 120

Query: 121 PLLKQDLYTIIEYKPPAERPPLRKLYSLLFNNVTRMDYAARDK 164
           PLLKQDLYTIIEYKPPAERPPLRKLYSLLFNNVTR +   R++
Sbjct: 121 PLLKQDLYTIIEYKPPAERPPLRKLYSLLFNNVTRREIKMRNE 162

[Close]

BLAST of Carg18301 vs. TAIR10
Match: AT2G01918.1 (PsbQ-like 3)

HSP 1 Score: 102.4 bits (254), Expect = 3.0e-22
Identity = 52/109 (47.71%), Postives = 74/109 (67.89%), Query Frame = 0


Query: 79  PEQSFEEAESGIRGHAEAVLQVRG-LIESESWKEAQKQLRTSSPLLKQDLYTIIEYKPPA 138
           PE++ E A+ G+R +AE + +++  +IE + WKE  K+LR S+  +KQD Y II+ KPP 
Sbjct: 79  PERTVELAQEGLRKNAENIKRIKEIMIEKKLWKEGGKELRRSASNMKQDFYLIIQAKPPK 138

Query: 139 ERPPLRKLYSLLFNNVTRMDYAARDKDAERVRQCYDNIEMAISDILSRI 187
           +RP  R LYS LFN++T+MDYAARD D  +V + Y NI   + DI  RI
Sbjct: 139 DRPLFRSLYSSLFNSITKMDYAARDGDETKVLEYYINIVAILDDIFPRI 187

[Close]

BLAST of Carg18301 vs. TAIR10
Match: AT3G01440.1 (PsbQ-like 1)

HSP 1 Score: 44.3 bits (103), Expect = 9.6e-05
Identity = 23/97 (23.71%), Postives = 49/97 (50.52%), Query Frame = 0


Query: 90  IRGHAEAVLQVRGLIESESWKEAQKQLRTSSPLLKQDLYTIIEYKPPAERPPLRKLYSLL 149
           ++ +A  +L +  LI  ++    +K LR  S  L  D   +I      ++ PL  L + L
Sbjct: 123 VKKNAFDLLAMEDLIGPDTLNYVKKYLRLKSTFLFYDFDNLISAAASEDKQPLTDLANRL 182

Query: 150 FNNVTRMDYAARDKDAERVRQCYDNIEMAISDILSRI 187
           F+N  +++ AA+ K+      CY + +  + ++++R+
Sbjct: 183 FDNFEKLEDAAKTKNLAETESCYKDTKFLLQEVMTRM 219

[Close]

BLAST of Carg18301 vs. Swiss-Prot
Match: sp|Q2V4B2|PQL3_ARATH (PsbQ-like protein 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PQL3 PE=2 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 5.4e-21
Identity = 52/109 (47.71%), Postives = 74/109 (67.89%), Query Frame = 0


Query: 79  PEQSFEEAESGIRGHAEAVLQVRG-LIESESWKEAQKQLRTSSPLLKQDLYTIIEYKPPA 138
           PE++ E A+ G+R +AE + +++  +IE + WKE  K+LR S+  +KQD Y II+ KPP 
Sbjct: 79  PERTVELAQEGLRKNAENIKRIKEIMIEKKLWKEGGKELRRSASNMKQDFYLIIQAKPPK 138

Query: 139 ERPPLRKLYSLLFNNVTRMDYAARDKDAERVRQCYDNIEMAISDILSRI 187
           +RP  R LYS LFN++T+MDYAARD D  +V + Y NI   + DI  RI
Sbjct: 139 DRPLFRSLYSSLFNSITKMDYAARDGDETKVLEYYINIVAILDDIFPRI 187

[Close]

BLAST of Carg18301 vs. TrEMBL
Match: tr|A0A1S3CIJ1|A0A1S3CIJ1_CUCME (psbQ-like protein 3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501351 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 1.5e-63
Identity = 139/186 (74.73%), Postives = 157/186 (84.41%), Query Frame = 0


Query: 1   MAELSPISVSNLSNRIHFSSSSPPINSSQLFSITAKRCSNCRSISRRLGLGLIALMASSS 60
           MA+L PIS+SNL+NRIHF SSSP   S Q F+ T     N ++ISRRLGLG IALMA SS
Sbjct: 1   MAKLIPISLSNLTNRIHF-SSSPLTISFQSFNTTPNCSKNAKNISRRLGLGFIALMA-SS 60

Query: 61  VASTPVRIANALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIESESWKEAQKQLRTSS 120
           V + P  +ANAL+LKLIAPEQS +EAE GIRGHAEA+LQVR L+ESE+WKEAQK+LR++S
Sbjct: 61  VTAIPAEVANALNLKLIAPEQSLDEAERGIRGHAEALLQVRSLMESEAWKEAQKRLRSTS 120

Query: 121 PLLKQDLYTIIEYKPPAERPPLRKLYSLLFNNVTRMDYAARDKDAERVRQCYDNIEMAIS 180
            LLKQDLYTIIEYKPPAERP LRKLYSLLFNNVTRMDYAARDKDA  VR+CY  +EMAIS
Sbjct: 121 ALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDAGGVRECYKKMEMAIS 180

Query: 181 DILSRI 187
           DILSRI
Sbjct: 181 DILSRI 184

[Close]

BLAST of Carg18301 vs. TrEMBL
Match: tr|A0A0A0KT23|A0A0A0KT23_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G315360 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 5.7e-60
Identity = 136/186 (73.12%), Postives = 152/186 (81.72%), Query Frame = 0


Query: 1   MAELSPISVSNLSNRIHFSSSSPPINSSQLFSITAKRCSNCRSISRRLGLGLIALMASSS 60
           MA+L PIS+SNL+NRIHF S SP   S   F+ T    +N  +ISRRLGLG IALMA SS
Sbjct: 1   MAKLIPISLSNLTNRIHF-SYSPLTISFPSFNTTPNCSNNATNISRRLGLGFIALMA-SS 60

Query: 61  VASTPVRIANALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIESESWKEAQKQLRTSS 120
           V + P  +ANALDLKLIAPEQS +EAESGIR HAEA+LQVR LIESE+WKEAQK+LR++S
Sbjct: 61  VTAIPAEVANALDLKLIAPEQSLDEAESGIRRHAEALLQVRSLIESEAWKEAQKRLRSTS 120

Query: 121 PLLKQDLYTIIEYKPPAERPPLRKLYSLLFNNVTRMDYAARDKDAERVRQCYDNIEMAIS 180
            LLKQDLYTIIEYKPPAERP LRKLYSLLFNNVTRMDYAARDKD   V + Y  +EMAIS
Sbjct: 121 ALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVGGVWESYKKMEMAIS 180

Query: 181 DILSRI 187
           DILSRI
Sbjct: 181 DILSRI 184

[Close]

BLAST of Carg18301 vs. TrEMBL
Match: tr|A0A061EGX6|A0A061EGX6_THECC (Calcium ion binding protein, putative isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_019126 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 5.0e-40
Identity = 92/144 (63.89%), Postives = 117/144 (81.25%), Query Frame = 0


Query: 43  SISRRLGLGLIALMASSSVASTPVRIANALDLKLIAPEQSFEEAESGIRGHAEAVLQVRG 102
           ++SRR  +G+IA MA   +       A  LDL+++APEQ+ EEAESG+  HA+A+LQVR 
Sbjct: 40  NMSRR--VGVIATMAPLLLIRE--ETACGLDLRMVAPEQTLEEAESGVENHAKALLQVRD 99

Query: 103 LIESESWKEAQKQLRTSSPLLKQDLYTIIEYKPPAERPPLRKLYSLLFNNVTRMDYAARD 162
           LIES+SW+EAQKQLR SS LLKQD+YTII+ KP +ERPPLRKLYS LFNNVT++DYAARD
Sbjct: 100 LIESKSWREAQKQLRKSSSLLKQDIYTIIQGKPGSERPPLRKLYSNLFNNVTKLDYAARD 159

Query: 163 KDAERVRQCYDNIEMAISDILSRI 187
           +DA RV QCYDNI +A++DILS++
Sbjct: 160 EDASRVWQCYDNIVLALNDILSKL 179

[Close]

BLAST of Carg18301 vs. TrEMBL
Match: tr|A0A2P5EPT1|A0A2P5EPT1_9ROSA (Oxygen-evolving enhancer protein OS=Trema orientalis OX=63057 GN=TorRG33x02_166630 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 7.3e-39
Identity = 86/140 (61.43%), Postives = 110/140 (78.57%), Query Frame = 0


Query: 47  RLGLGLIALMASSSVASTPVRIANALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIES 106
           R G  ++  +A+S V +   ++AN LD++L+AP+Q+ EEA+SGIRGHA A+LQV+  I+S
Sbjct: 43  RRGFVVMVAIAASLVLNFDGKLANGLDMELVAPDQTLEEAQSGIRGHALALLQVKAFIDS 102

Query: 107 ESWKEAQKQLRTSSPLLKQDLYTIIEYKPPAERPPLRKLYSLLFNNVTRMDYAARDKDAE 166
           ESW EAQK LR SS  +KQD YTII+ +P +ERP LRKLY  LFNNVT++DYAARDKDA 
Sbjct: 103 ESWGEAQKALRRSSAYVKQDFYTIIQGRPASERPQLRKLYFDLFNNVTKLDYAARDKDAS 162

Query: 167 RVRQCYDNIEMAISDILSRI 187
           RV QCYDNI M I+DILSR+
Sbjct: 163 RVLQCYDNIVMTINDILSRV 182

[Close]

BLAST of Carg18301 vs. TrEMBL
Match: tr|A0A2P5C6M3|A0A2P5C6M3_PARAD (Oxygen-evolving enhancer protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_178950 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 3.6e-38
Identity = 86/140 (61.43%), Postives = 109/140 (77.86%), Query Frame = 0


Query: 47  RLGLGLIALMASSSVASTPVRIANALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIES 106
           R G  ++  +A+S V +   ++AN LDL+L+AP+Q+ EEA+SGIRGHA A+LQV+  I+S
Sbjct: 43  RRGFVVMVAIAASLVLNFNGKLANGLDLELVAPDQTLEEAQSGIRGHALALLQVKAFIDS 102

Query: 107 ESWKEAQKQLRTSSPLLKQDLYTIIEYKPPAERPPLRKLYSLLFNNVTRMDYAARDKDAE 166
           ESW EAQK LR SS  +KQD YTII+ +P +ERP LRKLY  LFNNVT++DYAARDKDA 
Sbjct: 103 ESWGEAQKALRRSSAYVKQDFYTIIQGRPASERPQLRKLYFDLFNNVTKLDYAARDKDAS 162

Query: 167 RVRQCYDNIEMAISDILSRI 187
           RV QCY NI M I+DILSR+
Sbjct: 163 RVLQCYHNIVMTINDILSRV 182

The following BLAST results are available for this feature:

BLAST of Carg18301 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022962345.1	1.3e-92	99.46	psbQ-like protein 3, chloroplastic isoform X1 [Cucurbita moschata]	[more]
XP_023551782.1	4.9e-87	94.21	psbQ-like protein 3, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022991100.1	4.1e-86	94.62	psbQ-like protein 3, chloroplastic isoform X1 [Cucurbita maxima]	[more]
XP_022962354.1	8.6e-76	95.71	uncharacterized protein LOC111462819 isoform X2 [Cucurbita moschata]	[more]
XP_022991101.1	3.2e-70	90.80	uncharacterized protein LOC111487796 isoform X2 [Cucurbita maxima]	[more]

BLAST of Carg18301 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G01918.1	3.0e-22	47.71	PsbQ-like 3	[more]
AT3G01440.1	9.6e-05	23.71	PsbQ-like 1	[more]

BLAST of Carg18301 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q2V4B2\|PQL3_ARATH	5.4e-21	47.71	PsbQ-like protein 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PQL3 PE=2 ...	[more]

BLAST of Carg18301 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CIJ1\|A0A1S3CIJ1_CUCME	1.5e-63	74.73	psbQ-like protein 3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501351 PE=4 ...	[more]
tr\|A0A0A0KT23\|A0A0A0KT23_CUCSA	5.7e-60	73.12	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G315360 PE=4 SV=1	[more]
tr\|A0A061EGX6\|A0A061EGX6_THECC	5.0e-40	63.89	Calcium ion binding protein, putative isoform 1 OS=Theobroma cacao OX=3641 GN=TC...	[more]
tr\|A0A2P5EPT1\|A0A2P5EPT1_9ROSA	7.3e-39	61.43	Oxygen-evolving enhancer protein OS=Trema orientalis OX=63057 GN=TorRG33x02_1666...	[more]
tr\|A0A2P5C6M3\|A0A2P5C6M3_PARAD	3.6e-38	61.43	Oxygen-evolving enhancer protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

Vocabulary: **Cellular Component**
Term	Definition
GO:0009523	photosystem II
GO:0009654	photosystem II oxygen evolving complex
GO:0019898	extrinsic component of membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR023222	PsbQ-like_dom_sf
IPR008797	PSII_PsbQ

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0005509	calcium ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18301-RA	Carg18301-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:1.20.120.290		coord: 58..186 e-value: 5.7E-32 score: 112.8
None	No IPR available	PANTHER	PTHR33399:SF6	PSBQ-LIKE PROTEIN 3, CHLOROPLASTIC	coord: 20..186
IPR008797	Oxygen-evolving enhancer protein 3	PFAM	PF05757	PsbQ	coord: 80..185 e-value: 1.3E-18 score: 67.3
IPR008797	Oxygen-evolving enhancer protein 3	PANTHER	PTHR33399	FAMILY NOT NAMED	coord: 20..186
IPR023222	PsbQ-like domain superfamily	SUPERFAMILY	SSF101112	Oxygen-evolving enhancer protein 3,	coord: 79..186

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg18301	Cla009103	Watermelon (97103) v1	carwmB0524
Carg18301	Csa5G315360	Cucumber (Chinese Long) v2	carcuB0557
Carg18301	MELO3C025069	Melon (DHL92) v3.5.1	carmeB0531
Carg18301	ClCG01G008280	Watermelon (Charleston Gray)	carwcgB0510
Carg18301	CSPI05G13290	Wild cucumber (PI 183967)	carcpiB0563
Carg18301	Cucsa.173440	Cucumber (Gy14) v1	carcgyB0607
Carg18301	CmaCh04G022550	Cucurbita maxima (Rimu)	carcmaB0738
Carg18301	Lsi09G008750	Bottle gourd (USVL1VR-Ls)	carlsiB480
Carg18301	Cp4.1LG01g19590	Cucurbita pepo (Zucchini)	carcpeB0747
Carg18301	CsGy5G013320	Cucumber (Gy14) v2	carcgybB0534
Carg18301	MELO3C025069.2	Melon (DHL92) v3.6.1	carmedB0537
Carg18301	CsaV3_5G020220	Cucumber (Chinese Long) v3	carcucB0565
Carg18301	Cla97C01G008630	Watermelon (97103) v2	carwmbB0551

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg18301	Wax gourd	carwgoB0637
Carg18301	Silver-seed gourd	carcarB500
Carg18301	Cucurbita maxima (Rimu)	carcmaB0737
Carg18301	Cucurbita moschata (Rifu)	carcmoB0714
Carg18301	Cucurbita moschata (Rifu)	carcmoB0716
Carg18301	Cucurbita pepo (Zucchini)	carcpeB0746