Lsi09G008750 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi09G008750
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Oxygen-evolving enhancer protein 3-1, chloroplastic
Location	chr09 : 10193457 .. 10194328 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTATGTATTTTTTTCAAAAAAAATTCATCCATCCCTTGCTTACGTGGCAAATTCCTATCATCTCACATCCATACAAAGATACAGAGTTTGCACAAAAGCTTCACTCTGTACTCCAATGGCGGAATTAATCCCAATCTCAGTCTCAAACCTCTATAATCGCATTCATTTCTCTTCCTCTCTTCCCACAGTCTCCTTCCAATCATTCAAGACCACGCCAAATTGTTCTAATAACGCGAGAAACATAAGCAGAAGACTAGGGCTTGGATTCATAGCTTTAATGGCGTCATCAGTAACAGCGATACCGGTGGAAGTAGCAAATGCTTTGGATCTGAAATTGATCGCGCCGGAGCAGAGCTTGGACGAGGCTGAGACCGGAATCAGAGGCCACGTGGAAGCGCTTTTGCAGGTGAGAGGCTTAATCGAATCGGAGGCTTGGAAGGAAGCTCAGAAGCGGTTGAGAAGCAGTTCGGCGTTGCTGAAACAAGATCTGTACACTATAATTGAATACAAACCGCCTGCGGAGAGGCCTGCTCTCAGGAAACTCTATTCTCTTCTCTTCAACAATGTTACGCGAGTAAGTTCGATTGTTTGTTGAAGCTCTTCAATGGATTCTTATCTTGATTTGAAGTGAAATCGCGAAGAATTTTGTGCTGTTCTTCGATTTCTTATCGATCTTCTCCTTTGATTGAAGTGTTTTTTTTTTATGTGATTTGCAGATGGATTATGCAGCGAGAGATAAAGATGTAGAAGAAGTTTGGGAGTGCTACAATAAGATTGAGATGGCAATCTCTGATATTTTGTCAAGAATTTAGAAAGATTAATGAAGATTTTTTATTCTCAACTCAAGCCAATGAAATCGCATATTCATTA

mRNA sequence

CTTTATGTATTTTTTTCAAAAAAAATTCATCCATCCCTTGCTTACGTGGCAAATTCCTATCATCTCACATCCATACAAAGATACAGAGTTTGCACAAAAGCTTCACTCTGTACTCCAATGGCGGAATTAATCCCAATCTCAGTCTCAAACCTCTATAATCGCATTCATTTCTCTTCCTCTCTTCCCACAGTCTCCTTCCAATCATTCAAGACCACGCCAAATTGTTCTAATAACGCGAGAAACATAAGCAGAAGACTAGGGCTTGGATTCATAGCTTTAATGGCGTCATCAGTAACAGCGATACCGGTGGAAGTAGCAAATGCTTTGGATCTGAAATTGATCGCGCCGGAGCAGAGCTTGGACGAGGCTGAGACCGGAATCAGAGGCCACGTGGAAGCGCTTTTGCAGGTGAGAGGCTTAATCGAATCGGAGGCTTGGAAGGAAGCTCAGAAGCGGTTGAGAAGCAGTTCGGCGTTGCTGAAACAAGATCTGTACACTATAATTGAATACAAACCGCCTGCGGAGAGGCCTGCTCTCAGGAAACTCTATTCTCTTCTCTTCAACAATGTTACGCGAATGGATTATGCAGCGAGAGATAAAGATGTAGAAGAAGTTTGGGAGTGCTACAATAAGATTGAGATGGCAATCTCTGATATTTTGTCAAGAATTTAGAAAGATTAATGAAGATTTTTTATTCTCAACTCAAGCCAATGAAATCGCATATTCATTA

Coding sequence (CDS)

ATGGCGGAATTAATCCCAATCTCAGTCTCAAACCTCTATAATCGCATTCATTTCTCTTCCTCTCTTCCCACAGTCTCCTTCCAATCATTCAAGACCACGCCAAATTGTTCTAATAACGCGAGAAACATAAGCAGAAGACTAGGGCTTGGATTCATAGCTTTAATGGCGTCATCAGTAACAGCGATACCGGTGGAAGTAGCAAATGCTTTGGATCTGAAATTGATCGCGCCGGAGCAGAGCTTGGACGAGGCTGAGACCGGAATCAGAGGCCACGTGGAAGCGCTTTTGCAGGTGAGAGGCTTAATCGAATCGGAGGCTTGGAAGGAAGCTCAGAAGCGGTTGAGAAGCAGTTCGGCGTTGCTGAAACAAGATCTGTACACTATAATTGAATACAAACCGCCTGCGGAGAGGCCTGCTCTCAGGAAACTCTATTCTCTTCTCTTCAACAATGTTACGCGAATGGATTATGCAGCGAGAGATAAAGATGTAGAAGAAGTTTGGGAGTGCTACAATAAGATTGAGATGGCAATCTCTGATATTTTGTCAAGAATTTAG

Protein sequence

MAELIPISVSNLYNRIHFSSSLPTVSFQSFKTTPNCSNNARNISRRLGLGFIALMASSVTAIPVEVANALDLKLIAPEQSLDEAETGIRGHVEALLQVRGLIESEAWKEAQKRLRSSSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVEEVWECYNKIEMAISDILSRI

Homology

[Close]

BLAST of Lsi09G008750 vs. Swiss-Prot
Match: PQL3_ARATH (PsbQ-like protein 3, chloroplastic OS=Arabidopsis thaliana GN=PQL3 PE=2 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.6e-20
Identity = 50/109 (45.87%), Postives = 73/109 (66.97%), Query Frame = 1


Query: 77  PEQSLDEAETGIRGHVEALLQVRGL-IESEAWKEAQKRLRSSSALLKQDLYTIIEYKPPA 136
           PE++++ A+ G+R + E + +++ + IE + WKE  K LR S++ +KQD Y II+ KPP 
Sbjct: 79  PERTVELAQEGLRKNAENIKRIKEIMIEKKLWKEGGKELRRSASNMKQDFYLIIQAKPPK 138

Query: 137 ERPALRKLYSLLFNNVTRMDYAARDKDVEEVWECYNKIEMAISDILSRI 185
           +RP  R LYS LFN++T+MDYAARD D  +V E Y  I   + DI  RI
Sbjct: 139 DRPLFRSLYSSLFNSITKMDYAARDGDETKVLEYYINIVAILDDIFPRI 187

[Close]

BLAST of Lsi09G008750 vs. Swiss-Prot
Match: PSBQ1_ARATH (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana GN=PSBQ1 PE=1 SV=3)

HSP 1 Score: 65.1 bits (157), Expect = 9.3e-10
Identity = 32/102 (31.37%), Postives = 60/102 (58.82%), Query Frame = 1


Query: 83  EAETGIRGHVEALLQVRGLIESEAWKEAQKRLRSSSALLKQDLYTIIEYKPPAERPALRK 142
           EA    +   + ++ V+ LI+ +AW   Q  LRS ++ L+ DL TII  KP  E+ +L+ 
Sbjct: 122 EAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTIISSKPKDEKKSLKD 181

Query: 143 LYSLLFNNVTRMDYAARDKDVEEVWECYNKIEMAISDILSRI 185
           L + LF+ +  +DYAA+ K   +  + Y +   A++++L+++
Sbjct: 182 LTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 223

[Close]

BLAST of Lsi09G008750 vs. Swiss-Prot
Match: PSBQ1_MAIZE (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Zea mays GN=PSBQ1 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.7e-08
Identity = 29/102 (28.43%), Postives = 59/102 (57.84%), Query Frame = 1


Query: 83  EAETGIRGHVEALLQVRGLIESEAWKEAQKRLRSSSALLKQDLYTIIEYKPPAERPALRK 142
           EA   ++   + ++ ++ LI+ +AW   Q  LR  ++ L+ DL T+I  KP  E+ +L++
Sbjct: 115 EAAARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVIASKPKEEKKSLKE 174

Query: 143 LYSLLFNNVTRMDYAARDKDVEEVWECYNKIEMAISDILSRI 185
           L   LF+ +  +D+AA+ K   E  + +   + A+ D+L+++
Sbjct: 175 LTGKLFSTIDDLDHAAKIKSTPEAEKYFAATKDALGDVLAKL 216

[Close]

BLAST of Lsi09G008750 vs. Swiss-Prot
Match: PSBQ2_MAIZE (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Zea mays GN=PSBQ2 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.3e-08
Identity = 29/102 (28.43%), Postives = 59/102 (57.84%), Query Frame = 1


Query: 83  EAETGIRGHVEALLQVRGLIESEAWKEAQKRLRSSSALLKQDLYTIIEYKPPAERPALRK 142
           EA   ++   + ++ ++ LI+ +AW   Q  LR  ++ L+ DL T+I  KP  E+ +L++
Sbjct: 111 EAVARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVIASKPKEEKKSLKE 170

Query: 143 LYSLLFNNVTRMDYAARDKDVEEVWECYNKIEMAISDILSRI 185
           L   LF+ +  +D+AA+ K   E  + +   + A+ D+L+++
Sbjct: 171 LTGKLFSTIDDLDHAAKMKSTPEAEKYFAATKDALGDVLAKL 212

[Close]

BLAST of Lsi09G008750 vs. Swiss-Prot
Match: PSBQ_ORYSI (Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_025465 PE=1 SV=2)

HSP 1 Score: 59.3 bits (142), Expect = 5.1e-08
Identity = 34/108 (31.48%), Postives = 57/108 (52.78%), Query Frame = 1


Query: 79  QSLDEAETGIRGHVEA--LLQVRGLIESEAWKEAQKRLRSSSALLKQDLYTIIEYKPPAE 138
           Q L  AE   R    A  ++ ++ LIE + W   +  LR  ++ L+ DL T+I  KP  E
Sbjct: 109 QPLPPAEAAARAKESAQDIINLKPLIEKKQWPFVRDDLRLRASYLRYDLKTVINSKPKDE 168

Query: 139 RPALRKLYSLLFNNVTRMDYAARDKDVEEVWECYNKIEMAISDILSRI 185
           +  L+ L   LF  +  +D+AA+ K  EE  + Y   + A+ D+L+++
Sbjct: 169 KKGLKDLTGKLFATIDGLDHAAKIKSPEEAEKYYTLTKSALGDVLAKL 216

[Close]

BLAST of Lsi09G008750 vs. TrEMBL
Match: A0A0A0KT23_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G315360 PE=4 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 3.1e-81
Identity = 163/184 (88.59%), Postives = 169/184 (91.85%), Query Frame = 1


Query: 1   MAELIPISVSNLYNRIHFSSSLPTVSFQSFKTTPNCSNNARNISRRLGLGFIALMASSVT 60
           MA+LIPIS+SNL NRIHFS S  T+SF SF TTPNCSNNA NISRRLGLGFIALMASSVT
Sbjct: 1   MAKLIPISLSNLTNRIHFSYSPLTISFPSFNTTPNCSNNATNISRRLGLGFIALMASSVT 60

Query: 61  AIPVEVANALDLKLIAPEQSLDEAETGIRGHVEALLQVRGLIESEAWKEAQKRLRSSSAL 120
           AIP EVANALDLKLIAPEQSLDEAE+GIR H EALLQVR LIESEAWKEAQKRLRS+SAL
Sbjct: 61  AIPAEVANALDLKLIAPEQSLDEAESGIRRHAEALLQVRSLIESEAWKEAQKRLRSTSAL 120

Query: 121 LKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVEEVWECYNKIEMAISDI 180
           LKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDV  VWE Y K+EMAISDI
Sbjct: 121 LKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVGGVWESYKKMEMAISDI 180

Query: 181 LSRI 185
           LSRI
Sbjct: 181 LSRI 184

[Close]

BLAST of Lsi09G008750 vs. TrEMBL
Match: A0A061EGX6_THECC (Calcium ion binding protein, putative isoform 1 OS=Theobroma cacao GN=TCM_019126 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.1e-41
Identity = 100/184 (54.35%), Postives = 136/184 (73.91%), Query Frame = 1


Query: 1   MAELIPISVSNLYNRIHFSSSLPTVSFQSFKTTPNCSNNARNISRRLGLGFIALMASSVT 60
           M  L PI VS  YN+ + S +L T   +  K  P    ++ N+SRR+G+  IA MA  + 
Sbjct: 1   MIALRPILVSK-YNQPYSSKTLITCHVKPSKEMPQKLLHS-NMSRRVGV--IATMAP-LL 60

Query: 61  AIPVEVANALDLKLIAPEQSLDEAETGIRGHVEALLQVRGLIESEAWKEAQKRLRSSSAL 120
            I  E A  LDL+++APEQ+L+EAE+G+  H +ALLQVR LIES++W+EAQK+LR SS+L
Sbjct: 61  LIREETACGLDLRMVAPEQTLEEAESGVENHAKALLQVRDLIESKSWREAQKQLRKSSSL 120

Query: 121 LKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVEEVWECYNKIEMAISDI 180
           LKQD+YTII+ KP +ERP LRKLYS LFNNVT++DYAARD+D   VW+CY+ I +A++DI
Sbjct: 121 LKQDIYTIIQGKPGSERPPLRKLYSNLFNNVTKLDYAARDEDASRVWQCYDNIVLALNDI 179

Query: 181 LSRI 185
           LS++
Sbjct: 181 LSKL 179

[Close]

BLAST of Lsi09G008750 vs. TrEMBL
Match: F6HNZ9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0142g00310 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 3.0e-39
Identity = 90/147 (61.22%), Postives = 110/147 (74.83%), Query Frame = 1


Query: 42  NISRRLGLGFIALMASSVTA----IPVEVANALDLKLIAPEQSLDEAETGIRGHVEALLQ 101
           N +RR+G   IA MA  + A      V++AN  D K++AP Q+L+EAE+GIRGH  ALLQ
Sbjct: 85  NFTRRIGA--IATMAKVLLAREAIFNVKIANGFDFKMVAPGQTLEEAESGIRGHALALLQ 144

Query: 102 VRGLIESEAWKEAQKRLRSSSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYA 161
           V+ LIESEAWK+ QK LR SS+LLKQD+YTII+ KP + RP LRKLYS LFNNVTR+DYA
Sbjct: 145 VKALIESEAWKDMQKALRKSSSLLKQDIYTIIQSKPGSMRPQLRKLYSNLFNNVTRLDYA 204

Query: 162 ARDKDVEEVWECYNKIEMAISDILSRI 185
           ARD D  +VWE Y KI + + DILSRI
Sbjct: 205 ARDNDATQVWEYYEKIAITLDDILSRI 229

[Close]

BLAST of Lsi09G008750 vs. TrEMBL
Match: A5B0Z9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006311 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 3.0e-39
Identity = 90/147 (61.22%), Postives = 110/147 (74.83%), Query Frame = 1


Query: 42  NISRRLGLGFIALMASSVTA----IPVEVANALDLKLIAPEQSLDEAETGIRGHVEALLQ 101
           N +RR+G   IA MA  + A      V++AN  D K++AP Q+L+EAE+GIRGH  ALLQ
Sbjct: 40  NFTRRIGA--IATMAKVLLAREAIFNVKIANGFDFKMVAPGQTLEEAESGIRGHALALLQ 99

Query: 102 VRGLIESEAWKEAQKRLRSSSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYA 161
           V+ LIESEAWK+ QK LR SS+LLKQD+YTII+ KP + RP LRKLYS LFNNVTR+DYA
Sbjct: 100 VKALIESEAWKDMQKALRKSSSLLKQDIYTIIQSKPGSMRPQLRKLYSNLFNNVTRLDYA 159

Query: 162 ARDKDVEEVWECYNKIEMAISDILSRI 185
           ARD D  +VWE Y KI + + DILSRI
Sbjct: 160 ARDNDATQVWEYYEKIAITLDDILSRI 184

[Close]

BLAST of Lsi09G008750 vs. TrEMBL
Match: A0A067E6V8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030036mg PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 2.0e-35
Identity = 79/147 (53.74%), Postives = 111/147 (75.51%), Query Frame = 1


Query: 42  NISRRLGLGFIALMASSVTAIPV----EVANALDLKLIAPEQSLDEAETGIRGHVEALLQ 101
           NISRR+G+  IA+ AS++ A       ++ANA + +++AP+Q++++AE+GIR H ++LL 
Sbjct: 40  NISRRIGV--IAVTASTMLAREAIFREDIANAFEFRMVAPDQTVEQAESGIRYHAQSLLH 99

Query: 102 VRGLIESEAWKEAQKRLRSSSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYA 161
           V+ L+ESE+W E QK LR+SSA LKQD+YT+I  KP  ERP LRKLYS LFN VT++DYA
Sbjct: 100 VKALLESESWSEVQKALRASSASLKQDIYTLINNKPATERPQLRKLYSDLFNGVTKLDYA 159

Query: 162 ARDKDVEEVWECYNKIEMAISDILSRI 185
           ARDKDV  V +CY  + +A+  ILSR+
Sbjct: 160 ARDKDVSRVHQCYENVVVALDSILSRL 184

[Close]

BLAST of Lsi09G008750 vs. TAIR10
Match: AT2G01918.1 (AT2G01918.1 PsbQ-like 3)

HSP 1 Score: 100.1 bits (248), Expect = 1.5e-21
Identity = 50/109 (45.87%), Postives = 73/109 (66.97%), Query Frame = 1


Query: 77  PEQSLDEAETGIRGHVEALLQVRGL-IESEAWKEAQKRLRSSSALLKQDLYTIIEYKPPA 136
           PE++++ A+ G+R + E + +++ + IE + WKE  K LR S++ +KQD Y II+ KPP 
Sbjct: 79  PERTVELAQEGLRKNAENIKRIKEIMIEKKLWKEGGKELRRSASNMKQDFYLIIQAKPPK 138

Query: 137 ERPALRKLYSLLFNNVTRMDYAARDKDVEEVWECYNKIEMAISDILSRI 185
           +RP  R LYS LFN++T+MDYAARD D  +V E Y  I   + DI  RI
Sbjct: 139 DRPLFRSLYSSLFNSITKMDYAARDGDETKVLEYYINIVAILDDIFPRI 187

[Close]

BLAST of Lsi09G008750 vs. TAIR10
Match: AT4G21280.2 (AT4G21280.2 photosystem II subunit QA)

HSP 1 Score: 65.1 bits (157), Expect = 5.2e-11
Identity = 32/102 (31.37%), Postives = 60/102 (58.82%), Query Frame = 1


Query: 83  EAETGIRGHVEALLQVRGLIESEAWKEAQKRLRSSSALLKQDLYTIIEYKPPAERPALRK 142
           EA    +   + ++ V+ LI+ +AW   Q  LRS ++ L+ DL TII  KP  E+ +L+ 
Sbjct: 122 EAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTIISSKPKDEKKSLKD 181

Query: 143 LYSLLFNNVTRMDYAARDKDVEEVWECYNKIEMAISDILSRI 185
           L + LF+ +  +DYAA+ K   +  + Y +   A++++L+++
Sbjct: 182 LTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 223

[Close]

BLAST of Lsi09G008750 vs. NCBI nr
Match: gi|449462369|ref|XP_004148913.1| (PREDICTED: psbQ-like protein 3, chloroplastic [Cucumis sativus])

HSP 1 Score: 309.3 bits (791), Expect = 4.5e-81
Identity = 163/184 (88.59%), Postives = 169/184 (91.85%), Query Frame = 1


Query: 1   MAELIPISVSNLYNRIHFSSSLPTVSFQSFKTTPNCSNNARNISRRLGLGFIALMASSVT 60
           MA+LIPIS+SNL NRIHFS S  T+SF SF TTPNCSNNA NISRRLGLGFIALMASSVT
Sbjct: 1   MAKLIPISLSNLTNRIHFSYSPLTISFPSFNTTPNCSNNATNISRRLGLGFIALMASSVT 60

Query: 61  AIPVEVANALDLKLIAPEQSLDEAETGIRGHVEALLQVRGLIESEAWKEAQKRLRSSSAL 120
           AIP EVANALDLKLIAPEQSLDEAE+GIR H EALLQVR LIESEAWKEAQKRLRS+SAL
Sbjct: 61  AIPAEVANALDLKLIAPEQSLDEAESGIRRHAEALLQVRSLIESEAWKEAQKRLRSTSAL 120

Query: 121 LKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVEEVWECYNKIEMAISDI 180
           LKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDV  VWE Y K+EMAISDI
Sbjct: 121 LKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVGGVWESYKKMEMAISDI 180

Query: 181 LSRI 185
           LSRI
Sbjct: 181 LSRI 184

[Close]

BLAST of Lsi09G008750 vs. NCBI nr
Match: gi|659126329|ref|XP_008463126.1| (PREDICTED: psbQ-like protein 3, chloroplastic [Cucumis melo])

HSP 1 Score: 308.9 bits (790), Expect = 5.9e-81
Identity = 162/184 (88.04%), Postives = 170/184 (92.39%), Query Frame = 1


Query: 1   MAELIPISVSNLYNRIHFSSSLPTVSFQSFKTTPNCSNNARNISRRLGLGFIALMASSVT 60
           MA+LIPIS+SNL NRIHFSSS  T+SFQSF TTPNCS NA+NISRRLGLGFIALMASSVT
Sbjct: 1   MAKLIPISLSNLTNRIHFSSSPLTISFQSFNTTPNCSKNAKNISRRLGLGFIALMASSVT 60

Query: 61  AIPVEVANALDLKLIAPEQSLDEAETGIRGHVEALLQVRGLIESEAWKEAQKRLRSSSAL 120
           AIP EVANAL+LKLIAPEQSLDEAE GIRGH EALLQVR L+ESEAWKEAQKRLRS+SAL
Sbjct: 61  AIPAEVANALNLKLIAPEQSLDEAERGIRGHAEALLQVRSLMESEAWKEAQKRLRSTSAL 120

Query: 121 LKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVEEVWECYNKIEMAISDI 180
           LKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKD   V ECY K+EMAISDI
Sbjct: 121 LKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDAGGVRECYKKMEMAISDI 180

Query: 181 LSRI 185
           LSRI
Sbjct: 181 LSRI 184

[Close]

BLAST of Lsi09G008750 vs. NCBI nr
Match: gi|590651808|ref|XP_007032986.1| (Calcium ion binding protein, putative isoform 1 [Theobroma cacao])

HSP 1 Score: 177.9 bits (450), Expect = 1.6e-41
Identity = 100/184 (54.35%), Postives = 136/184 (73.91%), Query Frame = 1


Query: 1   MAELIPISVSNLYNRIHFSSSLPTVSFQSFKTTPNCSNNARNISRRLGLGFIALMASSVT 60
           M  L PI VS  YN+ + S +L T   +  K  P    ++ N+SRR+G+  IA MA  + 
Sbjct: 1   MIALRPILVSK-YNQPYSSKTLITCHVKPSKEMPQKLLHS-NMSRRVGV--IATMAP-LL 60

Query: 61  AIPVEVANALDLKLIAPEQSLDEAETGIRGHVEALLQVRGLIESEAWKEAQKRLRSSSAL 120
            I  E A  LDL+++APEQ+L+EAE+G+  H +ALLQVR LIES++W+EAQK+LR SS+L
Sbjct: 61  LIREETACGLDLRMVAPEQTLEEAESGVENHAKALLQVRDLIESKSWREAQKQLRKSSSL 120

Query: 121 LKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVEEVWECYNKIEMAISDI 180
           LKQD+YTII+ KP +ERP LRKLYS LFNNVT++DYAARD+D   VW+CY+ I +A++DI
Sbjct: 121 LKQDIYTIIQGKPGSERPPLRKLYSNLFNNVTKLDYAARDEDASRVWQCYDNIVLALNDI 179

Query: 181 LSRI 185
           LS++
Sbjct: 181 LSKL 179

[Close]

BLAST of Lsi09G008750 vs. NCBI nr
Match: gi|147853522|emb|CAN78534.1| (hypothetical protein VITISV_006311 [Vitis vinifera])

HSP 1 Score: 169.9 bits (429), Expect = 4.3e-39
Identity = 90/147 (61.22%), Postives = 110/147 (74.83%), Query Frame = 1


Query: 42  NISRRLGLGFIALMASSVTA----IPVEVANALDLKLIAPEQSLDEAETGIRGHVEALLQ 101
           N +RR+G   IA MA  + A      V++AN  D K++AP Q+L+EAE+GIRGH  ALLQ
Sbjct: 40  NFTRRIGA--IATMAKVLLAREAIFNVKIANGFDFKMVAPGQTLEEAESGIRGHALALLQ 99

Query: 102 VRGLIESEAWKEAQKRLRSSSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYA 161
           V+ LIESEAWK+ QK LR SS+LLKQD+YTII+ KP + RP LRKLYS LFNNVTR+DYA
Sbjct: 100 VKALIESEAWKDMQKALRKSSSLLKQDIYTIIQSKPGSMRPQLRKLYSNLFNNVTRLDYA 159

Query: 162 ARDKDVEEVWECYNKIEMAISDILSRI 185
           ARD D  +VWE Y KI + + DILSRI
Sbjct: 160 ARDNDATQVWEYYEKIAITLDDILSRI 184

[Close]

BLAST of Lsi09G008750 vs. NCBI nr
Match: gi|225446877|ref|XP_002283897.1| (PREDICTED: psbQ-like protein 3, chloroplastic [Vitis vinifera])

HSP 1 Score: 169.9 bits (429), Expect = 4.3e-39
Identity = 90/147 (61.22%), Postives = 110/147 (74.83%), Query Frame = 1


Query: 42  NISRRLGLGFIALMASSVTA----IPVEVANALDLKLIAPEQSLDEAETGIRGHVEALLQ 101
           N +RR+G   IA MA  + A      V++AN  D K++AP Q+L+EAE+GIRGH  ALLQ
Sbjct: 40  NFTRRIGA--IATMAKVLLAREAIFNVKIANGFDFKMVAPGQTLEEAESGIRGHALALLQ 99

Query: 102 VRGLIESEAWKEAQKRLRSSSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYA 161
           V+ LIESEAWK+ QK LR SS+LLKQD+YTII+ KP + RP LRKLYS LFNNVTR+DYA
Sbjct: 100 VKALIESEAWKDMQKALRKSSSLLKQDIYTIIQSKPGSMRPQLRKLYSNLFNNVTRLDYA 159

Query: 162 ARDKDVEEVWECYNKIEMAISDILSRI 185
           ARD D  +VWE Y KI + + DILSRI
Sbjct: 160 ARDNDATQVWEYYEKIAITLDDILSRI 184

The following BLAST results are available for this feature:

BLAST of Lsi09G008750 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PQL3_ARATH	2.6e-20	45.87	PsbQ-like protein 3, chloroplastic OS=Arabidopsis thaliana GN=PQL3 PE=2 SV=1	[more]
PSBQ1_ARATH	9.3e-10	31.37	Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana GN=P...	[more]
PSBQ1_MAIZE	1.7e-08	28.43	Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Zea mays GN=PSBQ1 PE=2 SV...	[more]
PSBQ2_MAIZE	2.3e-08	28.43	Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Zea mays GN=PSBQ2 PE=3 SV...	[more]
PSBQ_ORYSI	5.1e-08	31.48	Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. indica ...	[more]

BLAST of Lsi09G008750 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KT23_CUCSA	3.1e-81	88.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G315360 PE=4 SV=1	[more]
A0A061EGX6_THECC	1.1e-41	54.35	Calcium ion binding protein, putative isoform 1 OS=Theobroma cacao GN=TCM_019126...	[more]
F6HNZ9_VITVI	3.0e-39	61.22	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0142g00310 PE=4 SV=...	[more]
A5B0Z9_VITVI	3.0e-39	61.22	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006311 PE=4 SV=1	[more]
A0A067E6V8_CITSI	2.0e-35	53.74	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030036mg PE=4 SV=1	[more]

BLAST of Lsi09G008750 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G01918.1	1.5e-21	45.87	PsbQ-like 3	[more]
AT4G21280.2	5.2e-11	31.37	photosystem II subunit QA	[more]

BLAST of Lsi09G008750 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449462369\|ref\|XP_004148913.1\|	4.5e-81	88.59	PREDICTED: psbQ-like protein 3, chloroplastic [Cucumis sativus]	[more]
gi\|659126329\|ref\|XP_008463126.1\|	5.9e-81	88.04	PREDICTED: psbQ-like protein 3, chloroplastic [Cucumis melo]	[more]
gi\|590651808\|ref\|XP_007032986.1\|	1.6e-41	54.35	Calcium ion binding protein, putative isoform 1 [Theobroma cacao]	[more]
gi\|147853522\|emb\|CAN78534.1\|	4.3e-39	61.22	hypothetical protein VITISV_006311 [Vitis vinifera]	[more]
gi\|225446877\|ref\|XP_002283897.1\|	4.3e-39	61.22	PREDICTED: psbQ-like protein 3, chloroplastic [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0019898	extrinsic component of membrane
GO:0009654	photosystem II oxygen evolving complex
GO:0009523	photosystem II

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR023222	PsbQ-like_dom_sf
IPR008797	PSII_PsbQ

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
biological_process	GO:0009767	photosynthetic electron transport chain
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G008750.1	Lsi09G008750.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008797	Oxygen-evolving enhancer protein 3	PFAM	PF05757	PsbQ	coord: 77..183 score: 2.0
IPR023222	PsbQ-like domain	GENE3D	G3DSA:1.20.120.290		coord: 69..184 score: 2.0
IPR023222	PsbQ-like domain	unknown	SSF101112	Oxygen-evolving enhancer protein 3,	coord: 77..184 score: 3.27
None	No IPR available	PANTHER	PTHR33399	FAMILY NOT NAMED	coord: 1..184 score: 4.1
None	No IPR available	PANTHER	PTHR33399:SF6	SUBFAMILY NOT NAMED	coord: 1..184 score: 4.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi09G008750	Csa5G315360	Cucumber (Chinese Long) v2	culsiB325
Lsi09G008750	CSPI05G13290	Wild cucumber (PI 183967)	cpilsiB331
Lsi09G008750	Cucsa.173440	Cucumber (Gy14) v1	cgylsiB288
Lsi09G008750	CmaCh04G022550	Cucurbita maxima (Rimu)	cmalsiB622
Lsi09G008750	Cla009103	Watermelon (97103) v1	lsiwmB029
Lsi09G008750	MELO3C025069	Melon (DHL92) v3.5.1	lsimeB013
Lsi09G008750	ClCG01G008280	Watermelon (Charleston Gray)	lsiwcgB008
Lsi09G008750	MELO3C025069.2	Melon (DHL92) v3.6.1	lsimedB014
Lsi09G008750	Cla97C01G008630	Watermelon (97103) v2	lsiwmbB007
Lsi09G008750	BhiUN384G53	Wax gourd	lsiwgoB052
Lsi09G008750	Cp4.1LG01g19590	Cucurbita pepo (Zucchini)	cpelsiB311
Lsi09G008750	CsGy5G013320	Cucumber (Gy14) v2	cgyblsiB297
Lsi09G008750	Carg18301	Silver-seed gourd	carlsiB480
Lsi09G008750	CsaV3_5G020220	Cucumber (Chinese Long) v3	cuclsiB348

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi09G008750	Wild cucumber (PI 183967)	cpilsiB326
Lsi09G008750	Silver-seed gourd	carlsiB754
Lsi09G008750	Wax gourd	lsiwgoB009
Lsi09G008750	Cucurbita maxima (Rimu)	cmalsiB268
Lsi09G008750	Cucurbita moschata (Rifu)	cmolsiB256
Lsi09G008750	Cucurbita moschata (Rifu)	cmolsiB610
Lsi09G008750	Cucurbita pepo (Zucchini)	cpelsiB130