Cla009103 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla009103
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Oxygen-evolving enhancer protein 3 (AHRD V1 ***- B6SQ77_MAIZE); contains Interpro domain(s) IPR008797 Photosystem II oxygen evolving complex protein PsbQ
Location	Chr1 : 22424567 .. 22425202 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGAATTAATCCCAATCTTAGCCTCAAACCTCAATAATCGCATCCATTTCTCTTCCTCTCTTCCCACAATCTCCTCCCCATGGTTCAAGACCACACCGTGTCCTTCTAATAACGCCACAAACATAAGCAGAAGACTGGGGCTGGGATTCATAGCTTTAATGGCGTCGTCAGTGACCGCGAAACCGGTGGAAGTAGCGAATGCTTTGGATCTGAAATTGATCGCGCCGGAGCAAAGTTTGGACGAGGCTGAGAGCGGAATCAGAAGCCACGCGAAAGCGCTTTTGCAGGTGAGAGGCTTAATCGAATCGGAGGCTTGGAAGGAAGCTCAGAAGCGATTGAGAAGCAGTTCGCCGCTGCTGAAACAAGATGTGTACACTATAATTGAATCCAAACCGCCTGCGGAGAGGCCTGCTCTCAGGAAACTCTATTCTCTTCTCTTCAACAATGTTACGCGAGTAAGTGTGATTGTTTGAAGCTCTTGAACGGATTCTTATCTTCTCTGATTGAAGTGTATTATTCTTTTTGGCGATTTCCAGATGGATTATGCGGCAAGAGATAAAGATGTAGAAGGAGTTTGGGAGTGTTACAATAAGATTGAGATGGCCATCTCTGATATTTTGTCAAGAATTTAG

mRNA sequence

ATGGCGGAATTAATCCCAATCTTAGCCTCAAACCTCAATAATCGCATCCATTTCTCTTCCTCTCTTCCCACAATCTCCTCCCCATGGTTCAAGACCACACCGTGTCCTTCTAATAACGCCACAAACATAAGCAGAAGACTGGGGCTGGGATTCATAGCTTTAATGGCGTCGTCAGTGACCGCGAAACCGGTGGAAGTAGCGAATGCTTTGGATCTGAAATTGATCGCGCCGGAGCAAAGTTTGGACGAGGCTGAGAGCGGAATCAGAAGCCACGCGAAAGCGCTTTTGCAGGTGAGAGGCTTAATCGAATCGGAGGCTTGGAAGGAAGCTCAGAAGCGATTGAGAAGCAGTTCGCCGCTGCTGAAACAAGATGTGTACACTATAATTGAATCCAAACCGCCTGCGGAGAGGCCTGCTCTCAGGAAACTCTATTCTCTTCTCTTCAACAATGTTACGCGAATGGATTATGCGGCAAGAGATAAAGATGTAGAAGGAGTTTGGGAGTGTTACAATAAGATTGAGATGGCCATCTCTGATATTTTGTCAAGAATTTAG

Coding sequence (CDS)

ATGGCGGAATTAATCCCAATCTTAGCCTCAAACCTCAATAATCGCATCCATTTCTCTTCCTCTCTTCCCACAATCTCCTCCCCATGGTTCAAGACCACACCGTGTCCTTCTAATAACGCCACAAACATAAGCAGAAGACTGGGGCTGGGATTCATAGCTTTAATGGCGTCGTCAGTGACCGCGAAACCGGTGGAAGTAGCGAATGCTTTGGATCTGAAATTGATCGCGCCGGAGCAAAGTTTGGACGAGGCTGAGAGCGGAATCAGAAGCCACGCGAAAGCGCTTTTGCAGGTGAGAGGCTTAATCGAATCGGAGGCTTGGAAGGAAGCTCAGAAGCGATTGAGAAGCAGTTCGCCGCTGCTGAAACAAGATGTGTACACTATAATTGAATCCAAACCGCCTGCGGAGAGGCCTGCTCTCAGGAAACTCTATTCTCTTCTCTTCAACAATGTTACGCGAATGGATTATGCGGCAAGAGATAAAGATGTAGAAGGAGTTTGGGAGTGTTACAATAAGATTGAGATGGCCATCTCTGATATTTTGTCAAGAATTTAG

Protein sequence

MAELIPILASNLNNRIHFSSSLPTISSPWFKTTPCPSNNATNISRRLGLGFIALMASSVTAKPVEVANALDLKLIAPEQSLDEAESGIRSHAKALLQVRGLIESEAWKEAQKRLRSSSPLLKQDVYTIIESKPPAERPALRKLYSLLFNNVTRMDYAARDKDVEGVWECYNKIEMAISDILSRI

Homology

[Close]

BLAST of Cla009103 vs. Swiss-Prot
Match: PQL3_ARATH (PsbQ-like protein 3, chloroplastic OS=Arabidopsis thaliana GN=PQL3 PE=2 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.6e-20
Identity = 50/109 (45.87%), Postives = 71/109 (65.14%), Query Frame = 1


Query: 77  PEQSLDEAESGIRSHAKALLQVRGL-IESEAWKEAQKRLRSSSPLLKQDVYTIIESKPPA 136
           PE++++ A+ G+R +A+ + +++ + IE + WKE  K LR S+  +KQD Y II++KPP 
Sbjct: 79  PERTVELAQEGLRKNAENIKRIKEIMIEKKLWKEGGKELRRSASNMKQDFYLIIQAKPPK 138

Query: 137 ERPALRKLYSLLFNNVTRMDYAARDKDVEGVWECYNKIEMAISDILSRI 185
           +RP  R LYS LFN++T+MDYAARD D   V E Y  I   + DI  RI
Sbjct: 139 DRPLFRSLYSSLFNSITKMDYAARDGDETKVLEYYINIVAILDDIFPRI 187

[Close]

BLAST of Cla009103 vs. Swiss-Prot
Match: PSBQ1_ARATH (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana GN=PSBQ1 PE=1 SV=3)

HSP 1 Score: 68.2 bits (165), Expect = 1.1e-10
Identity = 34/102 (33.33%), Postives = 59/102 (57.84%), Query Frame = 1


Query: 83  EAESGIRSHAKALLQVRGLIESEAWKEAQKRLRSSSPLLKQDVYTIIESKPPAERPALRK 142
           EA +  +  AK ++ V+ LI+ +AW   Q  LRS +  L+ D+ TII SKP  E+ +L+ 
Sbjct: 122 EAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTIISSKPKDEKKSLKD 181

Query: 143 LYSLLFNNVTRMDYAARDKDVEGVWECYNKIEMAISDILSRI 185
           L + LF+ +  +DYAA+ K      + Y +   A++++L+++
Sbjct: 182 LTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 223

[Close]

BLAST of Cla009103 vs. Swiss-Prot
Match: PSBQ2_ARATH (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana GN=PSBQ2 PE=1 SV=2)

HSP 1 Score: 65.1 bits (157), Expect = 9.3e-10
Identity = 30/102 (29.41%), Postives = 57/102 (55.88%), Query Frame = 1


Query: 83  EAESGIRSHAKALLQVRGLIESEAWKEAQKRLRSSSPLLKQDVYTIIESKPPAERPALRK 142
           EA +  +  AK ++ V+  I+ +AW   Q  LR  +  L+ D+ T+I +KP  E+ +L+ 
Sbjct: 128 EAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRLRASYLRYDLNTVISAKPKEEKQSLKD 187

Query: 143 LYSLLFNNVTRMDYAARDKDVEGVWECYNKIEMAISDILSRI 185
           L + LF  +  +DYAAR K      + Y++   +++++L+++
Sbjct: 188 LTAKLFQTIDNLDYAARSKSSPDAEKYYSETVSSLNNVLAKL 229

[Close]

BLAST of Cla009103 vs. Swiss-Prot
Match: PSBQ1_MAIZE (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Zea mays GN=PSBQ1 PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.3e-08
Identity = 29/102 (28.43%), Postives = 59/102 (57.84%), Query Frame = 1


Query: 83  EAESGIRSHAKALLQVRGLIESEAWKEAQKRLRSSSPLLKQDVYTIIESKPPAERPALRK 142
           EA + +++ A+ ++ ++ LI+ +AW   Q  LR  +  L+ D+ T+I SKP  E+ +L++
Sbjct: 115 EAAARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVIASKPKEEKKSLKE 174

Query: 143 LYSLLFNNVTRMDYAARDKDVEGVWECYNKIEMAISDILSRI 185
           L   LF+ +  +D+AA+ K      + +   + A+ D+L+++
Sbjct: 175 LTGKLFSTIDDLDHAAKIKSTPEAEKYFAATKDALGDVLAKL 216

[Close]

BLAST of Cla009103 vs. Swiss-Prot
Match: PSBQ2_MAIZE (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Zea mays GN=PSBQ2 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.7e-08
Identity = 29/102 (28.43%), Postives = 59/102 (57.84%), Query Frame = 1


Query: 83  EAESGIRSHAKALLQVRGLIESEAWKEAQKRLRSSSPLLKQDVYTIIESKPPAERPALRK 142
           EA + +++ A+ ++ ++ LI+ +AW   Q  LR  +  L+ D+ T+I SKP  E+ +L++
Sbjct: 111 EAVARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVIASKPKEEKKSLKE 170

Query: 143 LYSLLFNNVTRMDYAARDKDVEGVWECYNKIEMAISDILSRI 185
           L   LF+ +  +D+AA+ K      + +   + A+ D+L+++
Sbjct: 171 LTGKLFSTIDDLDHAAKMKSTPEAEKYFAATKDALGDVLAKL 212

[Close]

BLAST of Cla009103 vs. TrEMBL
Match: A0A0A0KT23_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G315360 PE=4 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 1.6e-77
Identity = 159/184 (86.41%), Postives = 164/184 (89.13%), Query Frame = 1


Query: 1   MAELIPILASNLNNRIHFSSSLPTISSPWFKTTPCPSNNATNISRRLGLGFIALMASSVT 60
           MA+LIPI  SNL NRIHFS S  TIS P F TTP  SNNATNISRRLGLGFIALMASSVT
Sbjct: 1   MAKLIPISLSNLTNRIHFSYSPLTISFPSFNTTPNCSNNATNISRRLGLGFIALMASSVT 60

Query: 61  AKPVEVANALDLKLIAPEQSLDEAESGIRSHAKALLQVRGLIESEAWKEAQKRLRSSSPL 120
           A P EVANALDLKLIAPEQSLDEAESGIR HA+ALLQVR LIESEAWKEAQKRLRS+S L
Sbjct: 61  AIPAEVANALDLKLIAPEQSLDEAESGIRRHAEALLQVRSLIESEAWKEAQKRLRSTSAL 120

Query: 121 LKQDVYTIIESKPPAERPALRKLYSLLFNNVTRMDYAARDKDVEGVWECYNKIEMAISDI 180
           LKQD+YTIIE KPPAERPALRKLYSLLFNNVTRMDYAARDKDV GVWE Y K+EMAISDI
Sbjct: 121 LKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVGGVWESYKKMEMAISDI 180

Query: 181 LSRI 185
           LSRI
Sbjct: 181 LSRI 184

[Close]

BLAST of Cla009103 vs. TrEMBL
Match: A0A061EGX6_THECC (Calcium ion binding protein, putative isoform 1 OS=Theobroma cacao GN=TCM_019126 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 2.2e-42
Identity = 101/184 (54.89%), Postives = 134/184 (72.83%), Query Frame = 1


Query: 1   MAELIPILASNLNNRIHFSSSLPTISSPWFKTTPCPSNNATNISRRLGLGFIALMASSVT 60
           M  L PIL S  N   + S +L T      K  P    ++ N+SRR+G+  IA MA  + 
Sbjct: 1   MIALRPILVSKYNQP-YSSKTLITCHVKPSKEMPQKLLHS-NMSRRVGV--IATMAPLLL 60

Query: 61  AKPVEVANALDLKLIAPEQSLDEAESGIRSHAKALLQVRGLIESEAWKEAQKRLRSSSPL 120
            +  E A  LDL+++APEQ+L+EAESG+ +HAKALLQVR LIES++W+EAQK+LR SS L
Sbjct: 61  IRE-ETACGLDLRMVAPEQTLEEAESGVENHAKALLQVRDLIESKSWREAQKQLRKSSSL 120

Query: 121 LKQDVYTIIESKPPAERPALRKLYSLLFNNVTRMDYAARDKDVEGVWECYNKIEMAISDI 180
           LKQD+YTII+ KP +ERP LRKLYS LFNNVT++DYAARD+D   VW+CY+ I +A++DI
Sbjct: 121 LKQDIYTIIQGKPGSERPPLRKLYSNLFNNVTKLDYAARDEDASRVWQCYDNIVLALNDI 179

Query: 181 LSRI 185
           LS++
Sbjct: 181 LSKL 179

[Close]

BLAST of Cla009103 vs. TrEMBL
Match: A5B0Z9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006311 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.6e-40
Identity = 92/148 (62.16%), Postives = 111/148 (75.00%), Query Frame = 1


Query: 41  TNISRRLGLGFIALMASSVTAKP----VEVANALDLKLIAPEQSLDEAESGIRSHAKALL 100
           +N +RR+G   IA MA  + A+     V++AN  D K++AP Q+L+EAESGIR HA ALL
Sbjct: 39  SNFTRRIGA--IATMAKVLLAREAIFNVKIANGFDFKMVAPGQTLEEAESGIRGHALALL 98

Query: 101 QVRGLIESEAWKEAQKRLRSSSPLLKQDVYTIIESKPPAERPALRKLYSLLFNNVTRMDY 160
           QV+ LIESEAWK+ QK LR SS LLKQD+YTII+SKP + RP LRKLYS LFNNVTR+DY
Sbjct: 99  QVKALIESEAWKDMQKALRKSSSLLKQDIYTIIQSKPGSMRPQLRKLYSNLFNNVTRLDY 158

Query: 161 AARDKDVEGVWECYNKIEMAISDILSRI 185
           AARD D   VWE Y KI + + DILSRI
Sbjct: 159 AARDNDATQVWEYYEKIAITLDDILSRI 184

[Close]

BLAST of Cla009103 vs. TrEMBL
Match: F6HNZ9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0142g00310 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.6e-40
Identity = 92/148 (62.16%), Postives = 111/148 (75.00%), Query Frame = 1


Query: 41  TNISRRLGLGFIALMASSVTAKP----VEVANALDLKLIAPEQSLDEAESGIRSHAKALL 100
           +N +RR+G   IA MA  + A+     V++AN  D K++AP Q+L+EAESGIR HA ALL
Sbjct: 84  SNFTRRIGA--IATMAKVLLAREAIFNVKIANGFDFKMVAPGQTLEEAESGIRGHALALL 143

Query: 101 QVRGLIESEAWKEAQKRLRSSSPLLKQDVYTIIESKPPAERPALRKLYSLLFNNVTRMDY 160
           QV+ LIESEAWK+ QK LR SS LLKQD+YTII+SKP + RP LRKLYS LFNNVTR+DY
Sbjct: 144 QVKALIESEAWKDMQKALRKSSSLLKQDIYTIIQSKPGSMRPQLRKLYSNLFNNVTRLDY 203

Query: 161 AARDKDVEGVWECYNKIEMAISDILSRI 185
           AARD D   VWE Y KI + + DILSRI
Sbjct: 204 AARDNDATQVWEYYEKIAITLDDILSRI 229

[Close]

BLAST of Cla009103 vs. TrEMBL
Match: A0A067E6V8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030036mg PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 9.6e-38
Identity = 85/173 (49.13%), Postives = 121/173 (69.94%), Query Frame = 1


Query: 17  HFSSSLPTISSPWFKTTPCPSNNAT-NISRRLGLGFIALMASSVTAKPV----EVANALD 76
           H   +      P F++   P N    NISRR+G+  IA+ AS++ A+      ++ANA +
Sbjct: 14  HLYPTFMCYQQPAFRSKGMPQNVLQCNISRRIGV--IAVTASTMLAREAIFREDIANAFE 73

Query: 77  LKLIAPEQSLDEAESGIRSHAKALLQVRGLIESEAWKEAQKRLRSSSPLLKQDVYTIIES 136
            +++AP+Q++++AESGIR HA++LL V+ L+ESE+W E QK LR+SS  LKQD+YT+I +
Sbjct: 74  FRMVAPDQTVEQAESGIRYHAQSLLHVKALLESESWSEVQKALRASSASLKQDIYTLINN 133

Query: 137 KPPAERPALRKLYSLLFNNVTRMDYAARDKDVEGVWECYNKIEMAISDILSRI 185
           KP  ERP LRKLYS LFN VT++DYAARDKDV  V +CY  + +A+  ILSR+
Sbjct: 134 KPATERPQLRKLYSDLFNGVTKLDYAARDKDVSRVHQCYENVVVALDSILSRL 184

[Close]

BLAST of Cla009103 vs. NCBI nr
Match: gi|449462369|ref|XP_004148913.1| (PREDICTED: psbQ-like protein 3, chloroplastic [Cucumis sativus])

HSP 1 Score: 297.0 bits (759), Expect = 2.3e-77
Identity = 159/184 (86.41%), Postives = 164/184 (89.13%), Query Frame = 1


Query: 1   MAELIPILASNLNNRIHFSSSLPTISSPWFKTTPCPSNNATNISRRLGLGFIALMASSVT 60
           MA+LIPI  SNL NRIHFS S  TIS P F TTP  SNNATNISRRLGLGFIALMASSVT
Sbjct: 1   MAKLIPISLSNLTNRIHFSYSPLTISFPSFNTTPNCSNNATNISRRLGLGFIALMASSVT 60

Query: 61  AKPVEVANALDLKLIAPEQSLDEAESGIRSHAKALLQVRGLIESEAWKEAQKRLRSSSPL 120
           A P EVANALDLKLIAPEQSLDEAESGIR HA+ALLQVR LIESEAWKEAQKRLRS+S L
Sbjct: 61  AIPAEVANALDLKLIAPEQSLDEAESGIRRHAEALLQVRSLIESEAWKEAQKRLRSTSAL 120

Query: 121 LKQDVYTIIESKPPAERPALRKLYSLLFNNVTRMDYAARDKDVEGVWECYNKIEMAISDI 180
           LKQD+YTIIE KPPAERPALRKLYSLLFNNVTRMDYAARDKDV GVWE Y K+EMAISDI
Sbjct: 121 LKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVGGVWESYKKMEMAISDI 180

Query: 181 LSRI 185
           LSRI
Sbjct: 181 LSRI 184

[Close]

BLAST of Cla009103 vs. NCBI nr
Match: gi|659126329|ref|XP_008463126.1| (PREDICTED: psbQ-like protein 3, chloroplastic [Cucumis melo])

HSP 1 Score: 283.9 bits (725), Expect = 2.0e-73
Identity = 153/184 (83.15%), Postives = 160/184 (86.96%), Query Frame = 1


Query: 1   MAELIPILASNLNNRIHFSSSLPTISSPWFKTTPCPSNNATNISRRLGLGFIALMASSVT 60
           MA+LIPI  SNL NRIHFSSS  TIS   F TTP  S NA NISRRLGLGFIALMASSVT
Sbjct: 1   MAKLIPISLSNLTNRIHFSSSPLTISFQSFNTTPNCSKNAKNISRRLGLGFIALMASSVT 60

Query: 61  AKPVEVANALDLKLIAPEQSLDEAESGIRSHAKALLQVRGLIESEAWKEAQKRLRSSSPL 120
           A P EVANAL+LKLIAPEQSLDEAE GIR HA+ALLQVR L+ESEAWKEAQKRLRS+S L
Sbjct: 61  AIPAEVANALNLKLIAPEQSLDEAERGIRGHAEALLQVRSLMESEAWKEAQKRLRSTSAL 120

Query: 121 LKQDVYTIIESKPPAERPALRKLYSLLFNNVTRMDYAARDKDVEGVWECYNKIEMAISDI 180
           LKQD+YTIIE KPPAERPALRKLYSLLFNNVTRMDYAARDKD  GV ECY K+EMAISDI
Sbjct: 121 LKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDAGGVRECYKKMEMAISDI 180

Query: 181 LSRI 185
           LSRI
Sbjct: 181 LSRI 184

[Close]

BLAST of Cla009103 vs. NCBI nr
Match: gi|590651808|ref|XP_007032986.1| (Calcium ion binding protein, putative isoform 1 [Theobroma cacao])

HSP 1 Score: 180.3 bits (456), Expect = 3.2e-42
Identity = 101/184 (54.89%), Postives = 134/184 (72.83%), Query Frame = 1


Query: 1   MAELIPILASNLNNRIHFSSSLPTISSPWFKTTPCPSNNATNISRRLGLGFIALMASSVT 60
           M  L PIL S  N   + S +L T      K  P    ++ N+SRR+G+  IA MA  + 
Sbjct: 1   MIALRPILVSKYNQP-YSSKTLITCHVKPSKEMPQKLLHS-NMSRRVGV--IATMAPLLL 60

Query: 61  AKPVEVANALDLKLIAPEQSLDEAESGIRSHAKALLQVRGLIESEAWKEAQKRLRSSSPL 120
            +  E A  LDL+++APEQ+L+EAESG+ +HAKALLQVR LIES++W+EAQK+LR SS L
Sbjct: 61  IRE-ETACGLDLRMVAPEQTLEEAESGVENHAKALLQVRDLIESKSWREAQKQLRKSSSL 120

Query: 121 LKQDVYTIIESKPPAERPALRKLYSLLFNNVTRMDYAARDKDVEGVWECYNKIEMAISDI 180
           LKQD+YTII+ KP +ERP LRKLYS LFNNVT++DYAARD+D   VW+CY+ I +A++DI
Sbjct: 121 LKQDIYTIIQGKPGSERPPLRKLYSNLFNNVTKLDYAARDEDASRVWQCYDNIVLALNDI 179

Query: 181 LSRI 185
           LS++
Sbjct: 181 LSKL 179

[Close]

BLAST of Cla009103 vs. NCBI nr
Match: gi|147853522|emb|CAN78534.1| (hypothetical protein VITISV_006311 [Vitis vinifera])

HSP 1 Score: 174.1 bits (440), Expect = 2.3e-40
Identity = 92/148 (62.16%), Postives = 111/148 (75.00%), Query Frame = 1


Query: 41  TNISRRLGLGFIALMASSVTAKP----VEVANALDLKLIAPEQSLDEAESGIRSHAKALL 100
           +N +RR+G   IA MA  + A+     V++AN  D K++AP Q+L+EAESGIR HA ALL
Sbjct: 39  SNFTRRIGA--IATMAKVLLAREAIFNVKIANGFDFKMVAPGQTLEEAESGIRGHALALL 98

Query: 101 QVRGLIESEAWKEAQKRLRSSSPLLKQDVYTIIESKPPAERPALRKLYSLLFNNVTRMDY 160
           QV+ LIESEAWK+ QK LR SS LLKQD+YTII+SKP + RP LRKLYS LFNNVTR+DY
Sbjct: 99  QVKALIESEAWKDMQKALRKSSSLLKQDIYTIIQSKPGSMRPQLRKLYSNLFNNVTRLDY 158

Query: 161 AARDKDVEGVWECYNKIEMAISDILSRI 185
           AARD D   VWE Y KI + + DILSRI
Sbjct: 159 AARDNDATQVWEYYEKIAITLDDILSRI 184

[Close]

BLAST of Cla009103 vs. NCBI nr
Match: gi|225446877|ref|XP_002283897.1| (PREDICTED: psbQ-like protein 3, chloroplastic [Vitis vinifera])

HSP 1 Score: 174.1 bits (440), Expect = 2.3e-40
Identity = 92/148 (62.16%), Postives = 111/148 (75.00%), Query Frame = 1


Query: 41  TNISRRLGLGFIALMASSVTAKP----VEVANALDLKLIAPEQSLDEAESGIRSHAKALL 100
           +N +RR+G   IA MA  + A+     V++AN  D K++AP Q+L+EAESGIR HA ALL
Sbjct: 39  SNFTRRIGA--IATMAKVLLAREAIFNVKIANGFDFKMVAPGQTLEEAESGIRGHALALL 98

Query: 101 QVRGLIESEAWKEAQKRLRSSSPLLKQDVYTIIESKPPAERPALRKLYSLLFNNVTRMDY 160
           QV+ LIESEAWK+ QK LR SS LLKQD+YTII+SKP + RP LRKLYS LFNNVTR+DY
Sbjct: 99  QVKALIESEAWKDMQKALRKSSSLLKQDIYTIIQSKPGSMRPQLRKLYSNLFNNVTRLDY 158

Query: 161 AARDKDVEGVWECYNKIEMAISDILSRI 185
           AARD D   VWE Y KI + + DILSRI
Sbjct: 159 AARDNDATQVWEYYEKIAITLDDILSRI 184

The following BLAST results are available for this feature:

BLAST of Cla009103 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PQL3_ARATH	2.6e-20	45.87	PsbQ-like protein 3, chloroplastic OS=Arabidopsis thaliana GN=PQL3 PE=2 SV=1	[more]
PSBQ1_ARATH	1.1e-10	33.33	Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana GN=P...	[more]
PSBQ2_ARATH	9.3e-10	29.41	Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana GN=P...	[more]
PSBQ1_MAIZE	1.3e-08	28.43	Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Zea mays GN=PSBQ1 PE=2 SV...	[more]
PSBQ2_MAIZE	1.7e-08	28.43	Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Zea mays GN=PSBQ2 PE=3 SV...	[more]

BLAST of Cla009103 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KT23_CUCSA	1.6e-77	86.41	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G315360 PE=4 SV=1	[more]
A0A061EGX6_THECC	2.2e-42	54.89	Calcium ion binding protein, putative isoform 1 OS=Theobroma cacao GN=TCM_019126...	[more]
A5B0Z9_VITVI	1.6e-40	62.16	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006311 PE=4 SV=1	[more]
F6HNZ9_VITVI	1.6e-40	62.16	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0142g00310 PE=4 SV=...	[more]
A0A067E6V8_CITSI	9.6e-38	49.13	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030036mg PE=4 SV=1	[more]

BLAST of Cla009103 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449462369\|ref\|XP_004148913.1\|	2.3e-77	86.41	PREDICTED: psbQ-like protein 3, chloroplastic [Cucumis sativus]	[more]
gi\|659126329\|ref\|XP_008463126.1\|	2.0e-73	83.15	PREDICTED: psbQ-like protein 3, chloroplastic [Cucumis melo]	[more]
gi\|590651808\|ref\|XP_007032986.1\|	3.2e-42	54.89	Calcium ion binding protein, putative isoform 1 [Theobroma cacao]	[more]
gi\|147853522\|emb\|CAN78534.1\|	2.3e-40	62.16	hypothetical protein VITISV_006311 [Vitis vinifera]	[more]
gi\|225446877\|ref\|XP_002283897.1\|	2.3e-40	62.16	PREDICTED: psbQ-like protein 3, chloroplastic [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008797	PSII_PsbQ
IPR023222	PsbQ-like_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0009523	photosystem II
GO:0009654	photosystem II oxygen evolving complex
GO:0019898	extrinsic component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
biological_process	GO:0009767	photosynthetic electron transport chain
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0005515	protein binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU13490	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU43820	watermelon EST collection version 2.0	transcribed_cluster
WMU49926	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla009103	Cla009103.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU49926	WMU49926	transcribed_cluster
WMU13490	WMU13490	transcribed_cluster
WMU43820	WMU43820	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008797	Oxygen-evolving enhancer protein 3	PFAM	PF05757	PsbQ	coord: 77..183 score: 3.7
IPR023222	PsbQ-like domain	GENE3D	G3DSA:1.20.120.290		coord: 68..184 score: 1.2
IPR023222	PsbQ-like domain	unknown	SSF101112	Oxygen-evolving enhancer protein 3,	coord: 77..184 score: 5.23
None	No IPR available	PANTHER	PTHR33399	FAMILY NOT NAMED	coord: 65..184 score: 1.2
None	No IPR available	PANTHER	PTHR33399:SF6	SUBFAMILY NOT NAMED	coord: 65..184 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla009103	Cla97C01G008630	Watermelon (97103) v2	wmwmbB237
Cla009103	Csa5G315360	Cucumber (Chinese Long) v2	cuwmB412
Cla009103	MELO3C025069	Melon (DHL92) v3.5.1	mewmB032
Cla009103	ClCG01G008280	Watermelon (Charleston Gray)	wcgwmB144
Cla009103	CSPI05G13290	Wild cucumber (PI 183967)	cpiwmB429
Cla009103	Cucsa.173440	Cucumber (Gy14) v1	cgywmB330
Cla009103	CmaCh04G022550	Cucurbita maxima (Rimu)	cmawmB711
Cla009103	CmoCh04G023590	Cucurbita moschata (Rifu)	cmowmB707
Cla009103	Lsi09G008750	Bottle gourd (USVL1VR-Ls)	lsiwmB029
Cla009103	Cp4.1LG01g19590	Cucurbita pepo (Zucchini)	cpewmB441
Cla009103	CsGy5G013320	Cucumber (Gy14) v2	cgybwmB385
Cla009103	MELO3C025069.2	Melon (DHL92) v3.6.1	medwmB031
Cla009103	Carg18301	Silver-seed gourd	carwmB0524
Cla009103	CsaV3_5G020220	Cucumber (Chinese Long) v3	cucwmB437

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla009103	Cucurbita maxima (Rimu)	cmawmB279
Cla009103	Cucurbita moschata (Rifu)	cmowmB269
Cla009103	Cucurbita pepo (Zucchini)	cpewmB185
Cla009103	Silver-seed gourd	carwmB0831
Cla009103	Wax gourd	wgowmB078