Cp4.1LG01g19590 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g19590
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	PQL-like protein
Location	Cp4.1LG01 : 16737072 .. 16738008 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATTCTCTCTTGCTGACGTGGCACATTCCGAGCTTCTCGTTTCTATAAATAGACAGAGATCAGTAGGGGAAGCCTCACTCTGTACTTCAATGGCGGAATTAAGCCCAATCTCAGTCTCGAACCTCAGTAATCGTATCCATTTCTCTTCTTCTTCTCCTCCTATAATCTCCGTCCAATTGTTCAGCATCACAGCCAAGCGTTGTAGCAATTGCAGAAGCATAAGCAGAAGCATAAGCAGAAGATTAGGGCTGGGATTAATAGCTTTAATGGCGTCGTCGTCTGTAGCCTCGACGCCTGTGAAAATAGCGAATGCTTTGGATCTGAAATTGATAGCGCCGGAGCAGAGCTTCGAGGAGGCGGAGAGCGGAATCAGAGGCCATGCGGAAGCGGTTTTGCAGGTGAGAGGTTTAATTGAATCGGAGTCTTGGAAGGAAGCGCAGAAGCAGTTGAGAAGCAGTTCGCCGCTGCTGAAACAGGACCTGTACACTATAATTGAATATAAACCGCCCGCCGAGCGACCTCCTCTCAGGAGACTCTATTCTCTTCTCTTCAACAATGTTACTCGAGTAAGTTTGATTTGATCGTTTGAAGCTTGACAATGCCTTAATGATCTTCTTCAATTCAACTCTTCTGTTCTTCAATTTTGACGATTTGCAGATGGATTATGCGGCGAGAGATAAAGATGCGGAACGAGTTTGGCAGTGCTACGATAACATTGTGATGGCCATTTCTGACATTTTATCCAGAATTTAGAAAGATAAACAAAAGTTCTCGATTCTCCAGCCAATGATCGTAATACTCTTTCCAATCTTTTGTTTTTTGGATCTTATAACTTGGCATATAAACACAAAGTATTGGAAATAACATGTAGAATACAATGATGAACATGCATTGCATACAATTTAATGCCGAAGTTTGGATCTCAAGTAGTGTTAT

mRNA sequence

AAATTCTCTCTTGCTGACGTGGCACATTCCGAGCTTCTCGTTTCTATAAATAGACAGAGATCAGTAGGGGAAGCCTCACTCTGTACTTCAATGGCGGAATTAAGCCCAATCTCAGTCTCGAACCTCAGTAATCGTATCCATTTCTCTTCTTCTTCTCCTCCTATAATCTCCGTCCAATTGTTCAGCATCACAGCCAAGCGTTGTAGCAATTGCAGAAGCATAAGCAGAAGCATAAGCAGAAGATTAGGGCTGGGATTAATAGCTTTAATGGCGTCGTCGTCTGTAGCCTCGACGCCTGTGAAAATAGCGAATGCTTTGGATCTGAAATTGATAGCGCCGGAGCAGAGCTTCGAGGAGGCGGAGAGCGGAATCAGAGGCCATGCGGAAGCGGTTTTGCAGGTGAGAGGTTTAATTGAATCGGAGTCTTGGAAGGAAGCGCAGAAGCAGTTGAGAAGCAGTTCGCCGCTGCTGAAACAGGACCTGTACACTATAATTGAATATAAACCGCCCGCCGAGCGACCTCCTCTCAGGAGACTCTATTCTCTTCTCTTCAACAATGTTACTCGAATGGATTATGCGGCGAGAGATAAAGATGCGGAACGAGTTTGGCAGTGCTACGATAACATTGTGATGGCCATTTCTGACATTTTATCCAGAATTTAGAAAGATAAACAAAAGTTCTCGATTCTCCAGCCAATGATCGTAATACTCTTTCCAATCTTTTGTTTTTTGGATCTTATAACTTGGCATATAAACACAAAGTATTGGAAATAACATGTAGAATACAATGATGAACATGCATTGCATACAATTTAATGCCGAAGTTTGGATCTCAAGTAGTGTTAT

Coding sequence (CDS)

ATGGCGGAATTAAGCCCAATCTCAGTCTCGAACCTCAGTAATCGTATCCATTTCTCTTCTTCTTCTCCTCCTATAATCTCCGTCCAATTGTTCAGCATCACAGCCAAGCGTTGTAGCAATTGCAGAAGCATAAGCAGAAGCATAAGCAGAAGATTAGGGCTGGGATTAATAGCTTTAATGGCGTCGTCGTCTGTAGCCTCGACGCCTGTGAAAATAGCGAATGCTTTGGATCTGAAATTGATAGCGCCGGAGCAGAGCTTCGAGGAGGCGGAGAGCGGAATCAGAGGCCATGCGGAAGCGGTTTTGCAGGTGAGAGGTTTAATTGAATCGGAGTCTTGGAAGGAAGCGCAGAAGCAGTTGAGAAGCAGTTCGCCGCTGCTGAAACAGGACCTGTACACTATAATTGAATATAAACCGCCCGCCGAGCGACCTCCTCTCAGGAGACTCTATTCTCTTCTCTTCAACAATGTTACTCGAATGGATTATGCGGCGAGAGATAAAGATGCGGAACGAGTTTGGCAGTGCTACGATAACATTGTGATGGCCATTTCTGACATTTTATCCAGAATTTAG

Protein sequence

MAELSPISVSNLSNRIHFSSSSPPIISVQLFSITAKRCSNCRSISRSISRRLGLGLIALMASSSVASTPVKIANALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIESESWKEAQKQLRSSSPLLKQDLYTIIEYKPPAERPPLRRLYSLLFNNVTRMDYAARDKDAERVWQCYDNIVMAISDILSRI

Homology

[Close]

BLAST of Cp4.1LG01g19590 vs. Swiss-Prot
Match: PQL3_ARATH (PsbQ-like protein 3, chloroplastic OS=Arabidopsis thaliana GN=PQL3 PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 8.3e-22
Identity = 53/109 (48.62%), Postives = 75/109 (68.81%), Query Frame = 1


Query: 83  PEQSFEEAESGIRGHAEAVLQVRGL-IESESWKEAQKQLRSSSPLLKQDLYTIIEYKPPA 142
           PE++ E A+ G+R +AE + +++ + IE + WKE  K+LR S+  +KQD Y II+ KPP 
Sbjct: 79  PERTVELAQEGLRKNAENIKRIKEIMIEKKLWKEGGKELRRSASNMKQDFYLIIQAKPPK 138

Query: 143 ERPPLRRLYSLLFNNVTRMDYAARDKDAERVWQCYDNIVMAISDILSRI 191
           +RP  R LYS LFN++T+MDYAARD D  +V + Y NIV  + DI  RI
Sbjct: 139 DRPLFRSLYSSLFNSITKMDYAARDGDETKVLEYYINIVAILDDIFPRI 187

[Close]

BLAST of Cp4.1LG01g19590 vs. Swiss-Prot
Match: PSBQ1_ARATH (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana GN=PSBQ1 PE=1 SV=3)

HSP 1 Score: 66.6 bits (161), Expect = 3.3e-10
Identity = 33/102 (32.35%), Postives = 60/102 (58.82%), Query Frame = 1


Query: 89  EAESGIRGHAEAVLQVRGLIESESWKEAQKQLRSSSPLLKQDLYTIIEYKPPAERPPLRR 148
           EA +  +  A+ ++ V+ LI+ ++W   Q  LRS +  L+ DL TII  KP  E+  L+ 
Sbjct: 122 EAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTIISSKPKDEKKSLKD 181

Query: 149 LYSLLFNNVTRMDYAARDKDAERVWQCYDNIVMAISDILSRI 191
           L + LF+ +  +DYAA+ K   +  + Y   V A++++L+++
Sbjct: 182 LTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 223

[Close]

BLAST of Cp4.1LG01g19590 vs. Swiss-Prot
Match: PSBQ2_ARATH (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana GN=PSBQ2 PE=1 SV=2)

HSP 1 Score: 63.9 bits (154), Expect = 2.1e-09
Identity = 30/102 (29.41%), Postives = 57/102 (55.88%), Query Frame = 1


Query: 89  EAESGIRGHAEAVLQVRGLIESESWKEAQKQLRSSSPLLKQDLYTIIEYKPPAERPPLRR 148
           EA +  +  A+ ++ V+  I+ ++W   Q  LR  +  L+ DL T+I  KP  E+  L+ 
Sbjct: 128 EAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRLRASYLRYDLNTVISAKPKEEKQSLKD 187

Query: 149 LYSLLFNNVTRMDYAARDKDAERVWQCYDNIVMAISDILSRI 191
           L + LF  +  +DYAAR K +    + Y   V +++++L+++
Sbjct: 188 LTAKLFQTIDNLDYAARSKSSPDAEKYYSETVSSLNNVLAKL 229

[Close]

BLAST of Cp4.1LG01g19590 vs. Swiss-Prot
Match: PSBQ_ORYSI (Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_025465 PE=1 SV=2)

HSP 1 Score: 55.1 bits (131), Expect = 9.9e-07
Identity = 35/136 (25.74%), Postives = 65/136 (47.79%), Query Frame = 1


Query: 55  GLIALMASSSVASTPVKIANALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIESESWK 114
           GL   + S     T + +     L+ + P ++   A+      A+ ++ ++ LIE + W 
Sbjct: 85  GLPGTLNSDQARDTDLPLRERFYLQPLPPAEAAARAKES----AQDIINLKPLIEKKQWP 144

Query: 115 EAQKQLRSSSPLLKQDLYTIIEYKPPAERPPLRRLYSLLFNNVTRMDYAARDKDAERVWQ 174
             +  LR  +  L+ DL T+I  KP  E+  L+ L   LF  +  +D+AA+ K  E   +
Sbjct: 145 FVRDDLRLRASYLRYDLKTVINSKPKDEKKGLKDLTGKLFATIDGLDHAAKIKSPEEAEK 204

Query: 175 CYDNIVMAISDILSRI 191
            Y     A+ D+L+++
Sbjct: 205 YYTLTKSALGDVLAKL 216

[Close]

BLAST of Cp4.1LG01g19590 vs. Swiss-Prot
Match: PSBQ_ORYSJ (Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. japonica GN=Os07g0544800 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 9.9e-07
Identity = 35/136 (25.74%), Postives = 65/136 (47.79%), Query Frame = 1


Query: 55  GLIALMASSSVASTPVKIANALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIESESWK 114
           GL   + S     T + +     L+ + P ++   A+      A+ ++ ++ LIE + W 
Sbjct: 85  GLPGTLNSDQARDTDLPLRERFYLQPLPPAEAAARAKES----AQDIINLKPLIEKKQWP 144

Query: 115 EAQKQLRSSSPLLKQDLYTIIEYKPPAERPPLRRLYSLLFNNVTRMDYAARDKDAERVWQ 174
             +  LR  +  L+ DL T+I  KP  E+  L+ L   LF  +  +D+AA+ K  E   +
Sbjct: 145 FVRDDLRLRASYLRYDLKTVINSKPKDEKKGLKDLTGKLFATIDGLDHAAKIKSPEEAEK 204

Query: 175 CYDNIVMAISDILSRI 191
            Y     A+ D+L+++
Sbjct: 205 YYTLTKSALGDVLAKL 216

[Close]

BLAST of Cp4.1LG01g19590 vs. TrEMBL
Match: A0A0A0KT23_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G315360 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 5.8e-62
Identity = 138/190 (72.63%), Postives = 156/190 (82.11%), Query Frame = 1


Query: 1   MAELSPISVSNLSNRIHFSSSSPPIISVQLFSITAKRCSNCRSISRSISRRLGLGLIALM 60
           MA+L PIS+SNL+NRIHFS S P  IS   F+ T     NC + + +ISRRLGLG IALM
Sbjct: 1   MAKLIPISLSNLTNRIHFSYS-PLTISFPSFNTTP----NCSNNATNISRRLGLGFIALM 60

Query: 61  ASSSVASTPVKIANALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIESESWKEAQKQL 120
           ASS V + P ++ANALDLKLIAPEQS +EAESGIR HAEA+LQVR LIESE+WKEAQK+L
Sbjct: 61  ASS-VTAIPAEVANALDLKLIAPEQSLDEAESGIRRHAEALLQVRSLIESEAWKEAQKRL 120

Query: 121 RSSSPLLKQDLYTIIEYKPPAERPPLRRLYSLLFNNVTRMDYAARDKDAERVWQCYDNIV 180
           RS+S LLKQDLYTIIEYKPPAERP LR+LYSLLFNNVTRMDYAARDKD   VW+ Y  + 
Sbjct: 121 RSTSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVGGVWESYKKME 180

Query: 181 MAISDILSRI 191
           MAISDILSRI
Sbjct: 181 MAISDILSRI 184

[Close]

BLAST of Cp4.1LG01g19590 vs. TrEMBL
Match: A0A061EGX6_THECC (Calcium ion binding protein, putative isoform 1 OS=Theobroma cacao GN=TCM_019126 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.3e-42
Identity = 93/144 (64.58%), Postives = 120/144 (83.33%), Query Frame = 1


Query: 47  SISRRLGLGLIALMASSSVASTPVKIANALDLKLIAPEQSFEEAESGIRGHAEAVLQVRG 106
           ++SRR+G+  IA MA   +     + A  LDL+++APEQ+ EEAESG+  HA+A+LQVR 
Sbjct: 40  NMSRRVGV--IATMAPLLLIRE--ETACGLDLRMVAPEQTLEEAESGVENHAKALLQVRD 99

Query: 107 LIESESWKEAQKQLRSSSPLLKQDLYTIIEYKPPAERPPLRRLYSLLFNNVTRMDYAARD 166
           LIES+SW+EAQKQLR SS LLKQD+YTII+ KP +ERPPLR+LYS LFNNVT++DYAARD
Sbjct: 100 LIESKSWREAQKQLRKSSSLLKQDIYTIIQGKPGSERPPLRKLYSNLFNNVTKLDYAARD 159

Query: 167 KDAERVWQCYDNIVMAISDILSRI 191
           +DA RVWQCYDNIV+A++DILS++
Sbjct: 160 EDASRVWQCYDNIVLALNDILSKL 179

[Close]

BLAST of Cp4.1LG01g19590 vs. TrEMBL
Match: W9RDE2_9ROSA (Oxygen-evolving enhancer protein 3-1 OS=Morus notabilis GN=L484_023830 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 3.1e-39
Identity = 85/131 (64.89%), Postives = 109/131 (83.21%), Query Frame = 1


Query: 60  MASSSVASTPVKIANALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIESESWKEAQKQ 119
           +ASS   S   K A+ALD++++APEQ+ EEAESG+RGHA  +L+V+GLI+SESW +AQK 
Sbjct: 4   IASSMALSFDGKSASALDMRMVAPEQTVEEAESGVRGHALGLLEVKGLIDSESWGDAQKF 63

Query: 120 LRSSSPLLKQDLYTIIEYKPPAERPPLRRLYSLLFNNVTRMDYAARDKDAERVWQCYDNI 179
           LR SS  LK+DLYTII+ +P +ERP LR+LY  LF+NVT++DYAARDKDA RV QCYDNI
Sbjct: 64  LRKSSSYLKRDLYTIIQARPSSERPQLRKLYFDLFSNVTKLDYAARDKDASRVLQCYDNI 123

Query: 180 VMAISDILSRI 191
           V+A++DILSRI
Sbjct: 124 VVALNDILSRI 134

[Close]

BLAST of Cp4.1LG01g19590 vs. TrEMBL
Match: A5B0Z9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006311 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 3.4e-38
Identity = 87/140 (62.14%), Postives = 106/140 (75.71%), Query Frame = 1


Query: 54  LGLIALMASSSVASTP---VKIANALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIES 113
           +G IA MA   +A      VKIAN  D K++AP Q+ EEAESGIRGHA A+LQV+ LIES
Sbjct: 45  IGAIATMAKVLLAREAIFNVKIANGFDFKMVAPGQTLEEAESGIRGHALALLQVKALIES 104

Query: 114 ESWKEAQKQLRSSSPLLKQDLYTIIEYKPPAERPPLRRLYSLLFNNVTRMDYAARDKDAE 173
           E+WK+ QK LR SS LLKQD+YTII+ KP + RP LR+LYS LFNNVTR+DYAARD DA 
Sbjct: 105 EAWKDMQKALRKSSSLLKQDIYTIIQSKPGSMRPQLRKLYSNLFNNVTRLDYAARDNDAT 164

Query: 174 RVWQCYDNIVMAISDILSRI 191
           +VW+ Y+ I + + DILSRI
Sbjct: 165 QVWEYYEKIAITLDDILSRI 184

[Close]

BLAST of Cp4.1LG01g19590 vs. TrEMBL
Match: F6HNZ9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0142g00310 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 3.4e-38
Identity = 87/140 (62.14%), Postives = 106/140 (75.71%), Query Frame = 1


Query: 54  LGLIALMASSSVASTP---VKIANALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIES 113
           +G IA MA   +A      VKIAN  D K++AP Q+ EEAESGIRGHA A+LQV+ LIES
Sbjct: 90  IGAIATMAKVLLAREAIFNVKIANGFDFKMVAPGQTLEEAESGIRGHALALLQVKALIES 149

Query: 114 ESWKEAQKQLRSSSPLLKQDLYTIIEYKPPAERPPLRRLYSLLFNNVTRMDYAARDKDAE 173
           E+WK+ QK LR SS LLKQD+YTII+ KP + RP LR+LYS LFNNVTR+DYAARD DA 
Sbjct: 150 EAWKDMQKALRKSSSLLKQDIYTIIQSKPGSMRPQLRKLYSNLFNNVTRLDYAARDNDAT 209

Query: 174 RVWQCYDNIVMAISDILSRI 191
           +VW+ Y+ I + + DILSRI
Sbjct: 210 QVWEYYEKIAITLDDILSRI 229

[Close]

BLAST of Cp4.1LG01g19590 vs. TAIR10
Match: AT2G01918.1 (AT2G01918.1 PsbQ-like 3)

HSP 1 Score: 105.1 bits (261), Expect = 4.7e-23
Identity = 53/109 (48.62%), Postives = 75/109 (68.81%), Query Frame = 1


Query: 83  PEQSFEEAESGIRGHAEAVLQVRGL-IESESWKEAQKQLRSSSPLLKQDLYTIIEYKPPA 142
           PE++ E A+ G+R +AE + +++ + IE + WKE  K+LR S+  +KQD Y II+ KPP 
Sbjct: 79  PERTVELAQEGLRKNAENIKRIKEIMIEKKLWKEGGKELRRSASNMKQDFYLIIQAKPPK 138

Query: 143 ERPPLRRLYSLLFNNVTRMDYAARDKDAERVWQCYDNIVMAISDILSRI 191
           +RP  R LYS LFN++T+MDYAARD D  +V + Y NIV  + DI  RI
Sbjct: 139 DRPLFRSLYSSLFNSITKMDYAARDGDETKVLEYYINIVAILDDIFPRI 187

[Close]

BLAST of Cp4.1LG01g19590 vs. TAIR10
Match: AT4G21280.2 (AT4G21280.2 photosystem II subunit QA)

HSP 1 Score: 66.6 bits (161), Expect = 1.9e-11
Identity = 33/102 (32.35%), Postives = 60/102 (58.82%), Query Frame = 1


Query: 89  EAESGIRGHAEAVLQVRGLIESESWKEAQKQLRSSSPLLKQDLYTIIEYKPPAERPPLRR 148
           EA +  +  A+ ++ V+ LI+ ++W   Q  LRS +  L+ DL TII  KP  E+  L+ 
Sbjct: 122 EAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTIISSKPKDEKKSLKD 181

Query: 149 LYSLLFNNVTRMDYAARDKDAERVWQCYDNIVMAISDILSRI 191
           L + LF+ +  +DYAA+ K   +  + Y   V A++++L+++
Sbjct: 182 LTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 223

[Close]

BLAST of Cp4.1LG01g19590 vs. TAIR10
Match: AT4G05180.1 (AT4G05180.1 photosystem II subunit Q-2)

HSP 1 Score: 63.9 bits (154), Expect = 1.2e-10
Identity = 30/102 (29.41%), Postives = 57/102 (55.88%), Query Frame = 1


Query: 89  EAESGIRGHAEAVLQVRGLIESESWKEAQKQLRSSSPLLKQDLYTIIEYKPPAERPPLRR 148
           EA +  +  A+ ++ V+  I+ ++W   Q  LR  +  L+ DL T+I  KP  E+  L+ 
Sbjct: 128 EAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRLRASYLRYDLNTVISAKPKEEKQSLKD 187

Query: 149 LYSLLFNNVTRMDYAARDKDAERVWQCYDNIVMAISDILSRI 191
           L + LF  +  +DYAAR K +    + Y   V +++++L+++
Sbjct: 188 LTAKLFQTIDNLDYAARSKSSPDAEKYYSETVSSLNNVLAKL 229

[Close]

BLAST of Cp4.1LG01g19590 vs. NCBI nr
Match: gi|659126329|ref|XP_008463126.1| (PREDICTED: psbQ-like protein 3, chloroplastic [Cucumis melo])

HSP 1 Score: 248.8 bits (634), Expect = 7.5e-63
Identity = 139/190 (73.16%), Postives = 159/190 (83.68%), Query Frame = 1


Query: 1   MAELSPISVSNLSNRIHFSSSSPPIISVQLFSITAKRCSNCRSISRSISRRLGLGLIALM 60
           MA+L PIS+SNL+NRIHFSSS P  IS Q F+ T     NC   +++ISRRLGLG IALM
Sbjct: 1   MAKLIPISLSNLTNRIHFSSS-PLTISFQSFNTTP----NCSKNAKNISRRLGLGFIALM 60

Query: 61  ASSSVASTPVKIANALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIESESWKEAQKQL 120
           ASS V + P ++ANAL+LKLIAPEQS +EAE GIRGHAEA+LQVR L+ESE+WKEAQK+L
Sbjct: 61  ASS-VTAIPAEVANALNLKLIAPEQSLDEAERGIRGHAEALLQVRSLMESEAWKEAQKRL 120

Query: 121 RSSSPLLKQDLYTIIEYKPPAERPPLRRLYSLLFNNVTRMDYAARDKDAERVWQCYDNIV 180
           RS+S LLKQDLYTIIEYKPPAERP LR+LYSLLFNNVTRMDYAARDKDA  V +CY  + 
Sbjct: 121 RSTSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDAGGVRECYKKME 180

Query: 181 MAISDILSRI 191
           MAISDILSRI
Sbjct: 181 MAISDILSRI 184

[Close]

BLAST of Cp4.1LG01g19590 vs. NCBI nr
Match: gi|449462369|ref|XP_004148913.1| (PREDICTED: psbQ-like protein 3, chloroplastic [Cucumis sativus])

HSP 1 Score: 245.4 bits (625), Expect = 8.3e-62
Identity = 138/190 (72.63%), Postives = 156/190 (82.11%), Query Frame = 1


Query: 1   MAELSPISVSNLSNRIHFSSSSPPIISVQLFSITAKRCSNCRSISRSISRRLGLGLIALM 60
           MA+L PIS+SNL+NRIHFS S P  IS   F+ T     NC + + +ISRRLGLG IALM
Sbjct: 1   MAKLIPISLSNLTNRIHFSYS-PLTISFPSFNTTP----NCSNNATNISRRLGLGFIALM 60

Query: 61  ASSSVASTPVKIANALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIESESWKEAQKQL 120
           ASS V + P ++ANALDLKLIAPEQS +EAESGIR HAEA+LQVR LIESE+WKEAQK+L
Sbjct: 61  ASS-VTAIPAEVANALDLKLIAPEQSLDEAESGIRRHAEALLQVRSLIESEAWKEAQKRL 120

Query: 121 RSSSPLLKQDLYTIIEYKPPAERPPLRRLYSLLFNNVTRMDYAARDKDAERVWQCYDNIV 180
           RS+S LLKQDLYTIIEYKPPAERP LR+LYSLLFNNVTRMDYAARDKD   VW+ Y  + 
Sbjct: 121 RSTSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVGGVWESYKKME 180

Query: 181 MAISDILSRI 191
           MAISDILSRI
Sbjct: 181 MAISDILSRI 184

[Close]

BLAST of Cp4.1LG01g19590 vs. NCBI nr
Match: gi|590651808|ref|XP_007032986.1| (Calcium ion binding protein, putative isoform 1 [Theobroma cacao])

HSP 1 Score: 181.0 bits (458), Expect = 1.9e-42
Identity = 93/144 (64.58%), Postives = 120/144 (83.33%), Query Frame = 1


Query: 47  SISRRLGLGLIALMASSSVASTPVKIANALDLKLIAPEQSFEEAESGIRGHAEAVLQVRG 106
           ++SRR+G+  IA MA   +     + A  LDL+++APEQ+ EEAESG+  HA+A+LQVR 
Sbjct: 40  NMSRRVGV--IATMAPLLLIRE--ETACGLDLRMVAPEQTLEEAESGVENHAKALLQVRD 99

Query: 107 LIESESWKEAQKQLRSSSPLLKQDLYTIIEYKPPAERPPLRRLYSLLFNNVTRMDYAARD 166
           LIES+SW+EAQKQLR SS LLKQD+YTII+ KP +ERPPLR+LYS LFNNVT++DYAARD
Sbjct: 100 LIESKSWREAQKQLRKSSSLLKQDIYTIIQGKPGSERPPLRKLYSNLFNNVTKLDYAARD 159

Query: 167 KDAERVWQCYDNIVMAISDILSRI 191
           +DA RVWQCYDNIV+A++DILS++
Sbjct: 160 EDASRVWQCYDNIVLALNDILSKL 179

[Close]

BLAST of Cp4.1LG01g19590 vs. NCBI nr
Match: gi|703103288|ref|XP_010097690.1| (Oxygen-evolving enhancer protein 3-1 [Morus notabilis])

HSP 1 Score: 169.9 bits (429), Expect = 4.4e-39
Identity = 85/131 (64.89%), Postives = 109/131 (83.21%), Query Frame = 1


Query: 60  MASSSVASTPVKIANALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIESESWKEAQKQ 119
           +ASS   S   K A+ALD++++APEQ+ EEAESG+RGHA  +L+V+GLI+SESW +AQK 
Sbjct: 4   IASSMALSFDGKSASALDMRMVAPEQTVEEAESGVRGHALGLLEVKGLIDSESWGDAQKF 63

Query: 120 LRSSSPLLKQDLYTIIEYKPPAERPPLRRLYSLLFNNVTRMDYAARDKDAERVWQCYDNI 179
           LR SS  LK+DLYTII+ +P +ERP LR+LY  LF+NVT++DYAARDKDA RV QCYDNI
Sbjct: 64  LRKSSSYLKRDLYTIIQARPSSERPQLRKLYFDLFSNVTKLDYAARDKDASRVLQCYDNI 123

Query: 180 VMAISDILSRI 191
           V+A++DILSRI
Sbjct: 124 VVALNDILSRI 134

[Close]

BLAST of Cp4.1LG01g19590 vs. NCBI nr
Match: gi|1009110497|ref|XP_015895821.1| (PREDICTED: psbQ-like protein 3, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 168.3 bits (425), Expect = 1.3e-38
Identity = 91/146 (62.33%), Postives = 112/146 (76.71%), Query Frame = 1


Query: 45  SRSISRRLGLGLIALMASSSVASTPVKIANALDLKLIAPEQSFEEAESGIRGHAEAVLQV 104
           S  I+RR    +IA +  +  A    ++A  LDL+LIAP+QS +EAESGIRGHA A+LQV
Sbjct: 38  STGINRRRA-AMIASLLLAREAVLKQEVAYGLDLRLIAPDQSIQEAESGIRGHARALLQV 97

Query: 105 RGLIESESWKEAQKQLRSSSPLLKQDLYTIIEYKPPAERPPLRRLYSLLFNNVTRMDYAA 164
           + LI+SESW EAQK LR SS LLKQD+YTII+ KP  ERP LR+LYS LFNNV+R+DYAA
Sbjct: 98  KALIDSESWVEAQKALRKSSALLKQDVYTIIQNKPATERPQLRKLYSDLFNNVSRLDYAA 157

Query: 165 RDKDAERVWQCYDNIVMAISDILSRI 191
           RD D   V +CY+NIV+A+SDILSRI
Sbjct: 158 RDGDESSVLRCYENIVVALSDILSRI 182

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g19590 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PQL3_ARATH	8.3e-22	48.62	PsbQ-like protein 3, chloroplastic OS=Arabidopsis thaliana GN=PQL3 PE=2 SV=1	[more]
PSBQ1_ARATH	3.3e-10	32.35	Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana GN=P...	[more]
PSBQ2_ARATH	2.1e-09	29.41	Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana GN=P...	[more]
PSBQ_ORYSI	9.9e-07	25.74	Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. indica ...	[more]
PSBQ_ORYSJ	9.9e-07	25.74	Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. japonic...	[more]

BLAST of Cp4.1LG01g19590 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KT23_CUCSA	5.8e-62	72.63	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G315360 PE=4 SV=1	[more]
A0A061EGX6_THECC	1.3e-42	64.58	Calcium ion binding protein, putative isoform 1 OS=Theobroma cacao GN=TCM_019126...	[more]
W9RDE2_9ROSA	3.1e-39	64.89	Oxygen-evolving enhancer protein 3-1 OS=Morus notabilis GN=L484_023830 PE=4 SV=1	[more]
A5B0Z9_VITVI	3.4e-38	62.14	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006311 PE=4 SV=1	[more]
F6HNZ9_VITVI	3.4e-38	62.14	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0142g00310 PE=4 SV=...	[more]

BLAST of Cp4.1LG01g19590 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G01918.1	4.7e-23	48.62	PsbQ-like 3	[more]
AT4G21280.2	1.9e-11	32.35	photosystem II subunit QA	[more]
AT4G05180.1	1.2e-10	29.41	photosystem II subunit Q-2	[more]

BLAST of Cp4.1LG01g19590 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659126329\|ref\|XP_008463126.1\|	7.5e-63	73.16	PREDICTED: psbQ-like protein 3, chloroplastic [Cucumis melo]	[more]
gi\|449462369\|ref\|XP_004148913.1\|	8.3e-62	72.63	PREDICTED: psbQ-like protein 3, chloroplastic [Cucumis sativus]	[more]
gi\|590651808\|ref\|XP_007032986.1\|	1.9e-42	64.58	Calcium ion binding protein, putative isoform 1 [Theobroma cacao]	[more]
gi\|703103288\|ref\|XP_010097690.1\|	4.4e-39	64.89	Oxygen-evolving enhancer protein 3-1 [Morus notabilis]	[more]
gi\|1009110497\|ref\|XP_015895821.1\|	1.3e-38	62.33	PREDICTED: psbQ-like protein 3, chloroplastic [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0019898	extrinsic component of membrane
GO:0009654	photosystem II oxygen evolving complex
GO:0009523	photosystem II

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR023222	PsbQ-like_dom_sf
IPR008797	PSII_PsbQ

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009767	photosynthetic electron transport chain
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g19590.1	Cp4.1LG01g19590.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008797	Oxygen-evolving enhancer protein 3	PFAM	PF05757	PsbQ	coord: 84..189 score: 8.9
IPR023222	PsbQ-like domain	GENE3D	G3DSA:1.20.120.290		coord: 75..190 score: 3.7
IPR023222	PsbQ-like domain	unknown	SSF101112	Oxygen-evolving enhancer protein 3,	coord: 83..190 score: 1.96
None	No IPR available	PANTHER	PTHR33399	FAMILY NOT NAMED	coord: 72..190 score: 6.0
None	No IPR available	PANTHER	PTHR33399:SF6	SUBFAMILY NOT NAMED	coord: 72..190 score: 6.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g19590	Cucsa.173440	Cucumber (Gy14) v1	cgycpeB0477
Cp4.1LG01g19590	CmaCh04G022550	Cucurbita maxima (Rimu)	cmacpeB721
Cp4.1LG01g19590	Cla009103	Watermelon (97103) v1	cpewmB441
Cp4.1LG01g19590	Csa5G315360	Cucumber (Chinese Long) v2	cpecuB423
Cp4.1LG01g19590	MELO3C025069	Melon (DHL92) v3.5.1	cpemeB359
Cp4.1LG01g19590	ClCG01G008280	Watermelon (Charleston Gray)	cpewcgB370
Cp4.1LG01g19590	CSPI05G13290	Wild cucumber (PI 183967)	cpecpiB443
Cp4.1LG01g19590	Lsi09G008750	Bottle gourd (USVL1VR-Ls)	cpelsiB311
Cp4.1LG01g19590	MELO3C025069.2	Melon (DHL92) v3.6.1	cpemedB419
Cp4.1LG01g19590	CsaV3_5G020220	Cucumber (Chinese Long) v3	cpecucB0525
Cp4.1LG01g19590	CsGy5G013320	Cucumber (Gy14) v2	cgybcpeB632
Cp4.1LG01g19590	Carg18301	Silver-seed gourd	carcpeB0747

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g19590	Silver-seed gourd	carcpeB1158
Cp4.1LG01g19590	Wax gourd	cpewgoB0490
Cp4.1LG01g19590	Cucurbita pepo (Zucchini)	cpecpeB199
Cp4.1LG01g19590	Cucumber (Gy14) v1	cgycpeB0578
Cp4.1LG01g19590	Cucurbita maxima (Rimu)	cmacpeB318
Cp4.1LG01g19590	Cucurbita moschata (Rifu)	cmocpeB280
Cp4.1LG01g19590	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g19590	Wild cucumber (PI 183967)	cpecpiB427