CmaCh04G022550 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G022550
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Oxygen-evolving enhancer protein 3-1, chloroplastic
Location	Cma_Chr04 : 15750638 .. 15751599 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGACGTGGCATATTCCGAGCTTCTCATTTCCATAAATATACAGAGATCAGGAGGAAGCCTCTCTCTGTACTTCAATGGCGGAATTAAGCCCAATCTCAGTCTCAAACCTCAGTAATCGTATCCATTTCTCTTCTTCTCCTCCTATAATCTCCTTTCAATTGTTCAGCATCACAGCCAAGCGTTGTAGCAATTGCAGAAGCATAAGCAGAAGATTAGGGCTGGGATTCATGGCTTTAATGGCGTCGTCGTCTGTAGCCTCGACGCCTGTGAAAATAACGAATGCTTTGGATCTGAAATTGATAGCGCCGGAGCAGAGCTTCGAGGAGGCGGAGAGCGGAATCAGAGGCCATGCGGAAGCGGTTTTGCAGGTGAGAGGTTTAATTGAATCGGAGTCTTGGAAGGAAGCGCAGAAGCAGTTGAGAAGCAGTTCGCCGCTGCTCAAACAGGATCTGTACACTATAATTGAATATAAACCGCCTGCTGAGCGACCTCCTCTCAGGAAACTCTATTCTCTTCTCTTCAACAATGTTACTCGAGTAAGTTTGATTTGATCGTTTGAAGCTTGACAATGCCTTGATGATCTTCTTCAATTCAACTCTTCTGTTCTTCAATTTTGACGATTTGCAGATGGATTATGCAGCGAGAGATAAAGATGCGGAACGAGTTTGGCAGTGCTACGATAACATTGTGATGGCCATTTCTGACATTTTATCCAGAATTTAGAAAGATAAACGAAAGTTCTCGATTCTCCAGCCAATGATCGTAATACTCTTTCCATTCTTTTGTTTTTCGATCTTATAACTTGGCATATAAACACAAAATATTGGAAATAACATGTAGAATACAATGATGAACATGCATTGTGCCACGGTCCTACGGTTTTTTACTGTGTTGTCGTGATTTTGACACGCTCACGACTAGCCTTAAGGGAATTAAGCCCCATATATATTTTTAACTCGGC

mRNA sequence

CTGACGTGGCATATTCCGAGCTTCTCATTTCCATAAATATACAGAGATCAGGAGGAAGCCTCTCTCTGTACTTCAATGGCGGAATTAAGCCCAATCTCAGTCTCAAACCTCAGTAATCGTATCCATTTCTCTTCTTCTCCTCCTATAATCTCCTTTCAATTGTTCAGCATCACAGCCAAGCGTTGTAGCAATTGCAGAAGCATAAGCAGAAGATTAGGGCTGGGATTCATGGCTTTAATGGCGTCGTCGTCTGTAGCCTCGACGCCTGTGAAAATAACGAATGCTTTGGATCTGAAATTGATAGCGCCGGAGCAGAGCTTCGAGGAGGCGGAGAGCGGAATCAGAGGCCATGCGGAAGCGGTTTTGCAGGTGAGAGGTTTAATTGAATCGGAGTCTTGGAAGGAAGCGCAGAAGCAGTTGAGAAGCAGTTCGCCGCTGCTCAAACAGGATCTGTACACTATAATTGAATATAAACCGCCTGCTGAGCGACCTCCTCTCAGGAAACTCTATTCTCTTCTCTTCAACAATGTTACTCGAATGGATTATGCAGCGAGAGATAAAGATGCGGAACGAGTTTGGCAGTGCTACGATAACATTGTGATGGCCATTTCTGACATTTTATCCAGAATTTAGAAAGATAAACGAAAGTTCTCGATTCTCCAGCCAATGATCGTAATACTCTTTCCATTCTTTTGTTTTTCGATCTTATAACTTGGCATATAAACACAAAATATTGGAAATAACATGTAGAATACAATGATGAACATGCATTGTGCCACGGTCCTACGGTTTTTTACTGTGTTGTCGTGATTTTGACACGCTCACGACTAGCCTTAAGGGAATTAAGCCCCATATATATTTTTAACTCGGC

Coding sequence (CDS)

ATGGCGGAATTAAGCCCAATCTCAGTCTCAAACCTCAGTAATCGTATCCATTTCTCTTCTTCTCCTCCTATAATCTCCTTTCAATTGTTCAGCATCACAGCCAAGCGTTGTAGCAATTGCAGAAGCATAAGCAGAAGATTAGGGCTGGGATTCATGGCTTTAATGGCGTCGTCGTCTGTAGCCTCGACGCCTGTGAAAATAACGAATGCTTTGGATCTGAAATTGATAGCGCCGGAGCAGAGCTTCGAGGAGGCGGAGAGCGGAATCAGAGGCCATGCGGAAGCGGTTTTGCAGGTGAGAGGTTTAATTGAATCGGAGTCTTGGAAGGAAGCGCAGAAGCAGTTGAGAAGCAGTTCGCCGCTGCTCAAACAGGATCTGTACACTATAATTGAATATAAACCGCCTGCTGAGCGACCTCCTCTCAGGAAACTCTATTCTCTTCTCTTCAACAATGTTACTCGAATGGATTATGCAGCGAGAGATAAAGATGCGGAACGAGTTTGGCAGTGCTACGATAACATTGTGATGGCCATTTCTGACATTTTATCCAGAATTTAG

Protein sequence

MAELSPISVSNLSNRIHFSSSPPIISFQLFSITAKRCSNCRSISRRLGLGFMALMASSSVASTPVKITNALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIESESWKEAQKQLRSSSPLLKQDLYTIIEYKPPAERPPLRKLYSLLFNNVTRMDYAARDKDAERVWQCYDNIVMAISDILSRI

Homology

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BLAST of CmaCh04G022550 vs. Swiss-Prot
Match: PQL3_ARATH (PsbQ-like protein 3, chloroplastic OS=Arabidopsis thaliana GN=PQL3 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 6.2e-22
Identity = 53/109 (48.62%), Postives = 75/109 (68.81%), Query Frame = 1


Query: 78  PEQSFEEAESGIRGHAEAVLQVRGL-IESESWKEAQKQLRSSSPLLKQDLYTIIEYKPPA 137
           PE++ E A+ G+R +AE + +++ + IE + WKE  K+LR S+  +KQD Y II+ KPP 
Sbjct: 79  PERTVELAQEGLRKNAENIKRIKEIMIEKKLWKEGGKELRRSASNMKQDFYLIIQAKPPK 138

Query: 138 ERPPLRKLYSLLFNNVTRMDYAARDKDAERVWQCYDNIVMAISDILSRI 186
           +RP  R LYS LFN++T+MDYAARD D  +V + Y NIV  + DI  RI
Sbjct: 139 DRPLFRSLYSSLFNSITKMDYAARDGDETKVLEYYINIVAILDDIFPRI 187

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BLAST of CmaCh04G022550 vs. Swiss-Prot
Match: PSBQ1_ARATH (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana GN=PSBQ1 PE=1 SV=3)

HSP 1 Score: 67.0 bits (162), Expect = 2.5e-10
Identity = 33/102 (32.35%), Postives = 60/102 (58.82%), Query Frame = 1


Query: 84  EAESGIRGHAEAVLQVRGLIESESWKEAQKQLRSSSPLLKQDLYTIIEYKPPAERPPLRK 143
           EA +  +  A+ ++ V+ LI+ ++W   Q  LRS +  L+ DL TII  KP  E+  L+ 
Sbjct: 122 EAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTIISSKPKDEKKSLKD 181

Query: 144 LYSLLFNNVTRMDYAARDKDAERVWQCYDNIVMAISDILSRI 186
           L + LF+ +  +DYAA+ K   +  + Y   V A++++L+++
Sbjct: 182 LTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 223

[Close]

BLAST of CmaCh04G022550 vs. Swiss-Prot
Match: PSBQ2_ARATH (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana GN=PSBQ2 PE=1 SV=2)

HSP 1 Score: 64.3 bits (155), Expect = 1.6e-09
Identity = 30/102 (29.41%), Postives = 57/102 (55.88%), Query Frame = 1


Query: 84  EAESGIRGHAEAVLQVRGLIESESWKEAQKQLRSSSPLLKQDLYTIIEYKPPAERPPLRK 143
           EA +  +  A+ ++ V+  I+ ++W   Q  LR  +  L+ DL T+I  KP  E+  L+ 
Sbjct: 128 EAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRLRASYLRYDLNTVISAKPKEEKQSLKD 187

Query: 144 LYSLLFNNVTRMDYAARDKDAERVWQCYDNIVMAISDILSRI 186
           L + LF  +  +DYAAR K +    + Y   V +++++L+++
Sbjct: 188 LTAKLFQTIDNLDYAARSKSSPDAEKYYSETVSSLNNVLAKL 229

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BLAST of CmaCh04G022550 vs. Swiss-Prot
Match: PSBQ_ORYSI (Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_025465 PE=1 SV=2)

HSP 1 Score: 55.5 bits (132), Expect = 7.4e-07
Identity = 34/136 (25.00%), Postives = 64/136 (47.06%), Query Frame = 1


Query: 50  GFMALMASSSVASTPVKITNALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIESESWK 109
           G    + S     T + +     L+ + P ++   A+      A+ ++ ++ LIE + W 
Sbjct: 85  GLPGTLNSDQARDTDLPLRERFYLQPLPPAEAAARAKES----AQDIINLKPLIEKKQWP 144

Query: 110 EAQKQLRSSSPLLKQDLYTIIEYKPPAERPPLRKLYSLLFNNVTRMDYAARDKDAERVWQ 169
             +  LR  +  L+ DL T+I  KP  E+  L+ L   LF  +  +D+AA+ K  E   +
Sbjct: 145 FVRDDLRLRASYLRYDLKTVINSKPKDEKKGLKDLTGKLFATIDGLDHAAKIKSPEEAEK 204

Query: 170 CYDNIVMAISDILSRI 186
            Y     A+ D+L+++
Sbjct: 205 YYTLTKSALGDVLAKL 216

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BLAST of CmaCh04G022550 vs. Swiss-Prot
Match: PSBQ_ORYSJ (Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. japonica GN=Os07g0544800 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 7.4e-07
Identity = 34/136 (25.00%), Postives = 64/136 (47.06%), Query Frame = 1


Query: 50  GFMALMASSSVASTPVKITNALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIESESWK 109
           G    + S     T + +     L+ + P ++   A+      A+ ++ ++ LIE + W 
Sbjct: 85  GLPGTLNSDQARDTDLPLRERFYLQPLPPAEAAARAKES----AQDIINLKPLIEKKQWP 144

Query: 110 EAQKQLRSSSPLLKQDLYTIIEYKPPAERPPLRKLYSLLFNNVTRMDYAARDKDAERVWQ 169
             +  LR  +  L+ DL T+I  KP  E+  L+ L   LF  +  +D+AA+ K  E   +
Sbjct: 145 FVRDDLRLRASYLRYDLKTVINSKPKDEKKGLKDLTGKLFATIDGLDHAAKIKSPEEAEK 204

Query: 170 CYDNIVMAISDILSRI 186
            Y     A+ D+L+++
Sbjct: 205 YYTLTKSALGDVLAKL 216

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BLAST of CmaCh04G022550 vs. TrEMBL
Match: A0A0A0KT23_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G315360 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 1.4e-65
Identity = 138/185 (74.59%), Postives = 155/185 (83.78%), Query Frame = 1


Query: 1   MAELSPISVSNLSNRIHFSSSPPIISFQLFSITAKRCSNCRSISRRLGLGFMALMASSSV 60
           MA+L PIS+SNL+NRIHFS SP  ISF  F+ T    +N  +ISRRLGLGF+ALMASS V
Sbjct: 1   MAKLIPISLSNLTNRIHFSYSPLTISFPSFNTTPNCSNNATNISRRLGLGFIALMASS-V 60

Query: 61  ASTPVKITNALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIESESWKEAQKQLRSSSP 120
            + P ++ NALDLKLIAPEQS +EAESGIR HAEA+LQVR LIESE+WKEAQK+LRS+S 
Sbjct: 61  TAIPAEVANALDLKLIAPEQSLDEAESGIRRHAEALLQVRSLIESEAWKEAQKRLRSTSA 120

Query: 121 LLKQDLYTIIEYKPPAERPPLRKLYSLLFNNVTRMDYAARDKDAERVWQCYDNIVMAISD 180
           LLKQDLYTIIEYKPPAERP LRKLYSLLFNNVTRMDYAARDKD   VW+ Y  + MAISD
Sbjct: 121 LLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVGGVWESYKKMEMAISD 180

Query: 181 ILSRI 186
           ILSRI
Sbjct: 181 ILSRI 184

[Close]

BLAST of CmaCh04G022550 vs. TrEMBL
Match: A0A061EGX6_THECC (Calcium ion binding protein, putative isoform 1 OS=Theobroma cacao GN=TCM_019126 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 2.2e-42
Identity = 92/144 (63.89%), Postives = 118/144 (81.94%), Query Frame = 1


Query: 42  SISRRLGLGFMALMASSSVASTPVKITNALDLKLIAPEQSFEEAESGIRGHAEAVLQVRG 101
           ++SRR+G+  +A MA   +          LDL+++APEQ+ EEAESG+  HA+A+LQVR 
Sbjct: 40  NMSRRVGV--IATMAPLLLIREETAC--GLDLRMVAPEQTLEEAESGVENHAKALLQVRD 99

Query: 102 LIESESWKEAQKQLRSSSPLLKQDLYTIIEYKPPAERPPLRKLYSLLFNNVTRMDYAARD 161
           LIES+SW+EAQKQLR SS LLKQD+YTII+ KP +ERPPLRKLYS LFNNVT++DYAARD
Sbjct: 100 LIESKSWREAQKQLRKSSSLLKQDIYTIIQGKPGSERPPLRKLYSNLFNNVTKLDYAARD 159

Query: 162 KDAERVWQCYDNIVMAISDILSRI 186
           +DA RVWQCYDNIV+A++DILS++
Sbjct: 160 EDASRVWQCYDNIVLALNDILSKL 179

[Close]

BLAST of CmaCh04G022550 vs. TrEMBL
Match: W9RDE2_9ROSA (Oxygen-evolving enhancer protein 3-1 OS=Morus notabilis GN=L484_023830 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.8e-39
Identity = 86/134 (64.18%), Postives = 109/134 (81.34%), Query Frame = 1


Query: 52  MALMASSSVASTPVKITNALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIESESWKEA 111
           M  +ASS   S   K  +ALD++++APEQ+ EEAESG+RGHA  +L+V+GLI+SESW +A
Sbjct: 1   MVSIASSMALSFDGKSASALDMRMVAPEQTVEEAESGVRGHALGLLEVKGLIDSESWGDA 60

Query: 112 QKQLRSSSPLLKQDLYTIIEYKPPAERPPLRKLYSLLFNNVTRMDYAARDKDAERVWQCY 171
           QK LR SS  LK+DLYTII+ +P +ERP LRKLY  LF+NVT++DYAARDKDA RV QCY
Sbjct: 61  QKFLRKSSSYLKRDLYTIIQARPSSERPQLRKLYFDLFSNVTKLDYAARDKDASRVLQCY 120

Query: 172 DNIVMAISDILSRI 186
           DNIV+A++DILSRI
Sbjct: 121 DNIVVALNDILSRI 134

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BLAST of CmaCh04G022550 vs. TrEMBL
Match: A5B0Z9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006311 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.9e-38
Identity = 87/145 (60.00%), Postives = 109/145 (75.17%), Query Frame = 1


Query: 42  SISRRLG-LGFMALMASSSVASTPVKITNALDLKLIAPEQSFEEAESGIRGHAEAVLQVR 101
           + +RR+G +  MA +  +  A   VKI N  D K++AP Q+ EEAESGIRGHA A+LQV+
Sbjct: 40  NFTRRIGAIATMAKVLLAREAIFNVKIANGFDFKMVAPGQTLEEAESGIRGHALALLQVK 99

Query: 102 GLIESESWKEAQKQLRSSSPLLKQDLYTIIEYKPPAERPPLRKLYSLLFNNVTRMDYAAR 161
            LIESE+WK+ QK LR SS LLKQD+YTII+ KP + RP LRKLYS LFNNVTR+DYAAR
Sbjct: 100 ALIESEAWKDMQKALRKSSSLLKQDIYTIIQSKPGSMRPQLRKLYSNLFNNVTRLDYAAR 159

Query: 162 DKDAERVWQCYDNIVMAISDILSRI 186
           D DA +VW+ Y+ I + + DILSRI
Sbjct: 160 DNDATQVWEYYEKIAITLDDILSRI 184

[Close]

BLAST of CmaCh04G022550 vs. TrEMBL
Match: F6HNZ9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0142g00310 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.9e-38
Identity = 87/145 (60.00%), Postives = 109/145 (75.17%), Query Frame = 1


Query: 42  SISRRLG-LGFMALMASSSVASTPVKITNALDLKLIAPEQSFEEAESGIRGHAEAVLQVR 101
           + +RR+G +  MA +  +  A   VKI N  D K++AP Q+ EEAESGIRGHA A+LQV+
Sbjct: 85  NFTRRIGAIATMAKVLLAREAIFNVKIANGFDFKMVAPGQTLEEAESGIRGHALALLQVK 144

Query: 102 GLIESESWKEAQKQLRSSSPLLKQDLYTIIEYKPPAERPPLRKLYSLLFNNVTRMDYAAR 161
            LIESE+WK+ QK LR SS LLKQD+YTII+ KP + RP LRKLYS LFNNVTR+DYAAR
Sbjct: 145 ALIESEAWKDMQKALRKSSSLLKQDIYTIIQSKPGSMRPQLRKLYSNLFNNVTRLDYAAR 204

Query: 162 DKDAERVWQCYDNIVMAISDILSRI 186
           D DA +VW+ Y+ I + + DILSRI
Sbjct: 205 DNDATQVWEYYEKIAITLDDILSRI 229

[Close]

BLAST of CmaCh04G022550 vs. TAIR10
Match: AT2G01918.1 (AT2G01918.1 PsbQ-like 3)

HSP 1 Score: 105.5 bits (262), Expect = 3.5e-23
Identity = 53/109 (48.62%), Postives = 75/109 (68.81%), Query Frame = 1


Query: 78  PEQSFEEAESGIRGHAEAVLQVRGL-IESESWKEAQKQLRSSSPLLKQDLYTIIEYKPPA 137
           PE++ E A+ G+R +AE + +++ + IE + WKE  K+LR S+  +KQD Y II+ KPP 
Sbjct: 79  PERTVELAQEGLRKNAENIKRIKEIMIEKKLWKEGGKELRRSASNMKQDFYLIIQAKPPK 138

Query: 138 ERPPLRKLYSLLFNNVTRMDYAARDKDAERVWQCYDNIVMAISDILSRI 186
           +RP  R LYS LFN++T+MDYAARD D  +V + Y NIV  + DI  RI
Sbjct: 139 DRPLFRSLYSSLFNSITKMDYAARDGDETKVLEYYINIVAILDDIFPRI 187

[Close]

BLAST of CmaCh04G022550 vs. TAIR10
Match: AT4G21280.2 (AT4G21280.2 photosystem II subunit QA)

HSP 1 Score: 67.0 bits (162), Expect = 1.4e-11
Identity = 33/102 (32.35%), Postives = 60/102 (58.82%), Query Frame = 1


Query: 84  EAESGIRGHAEAVLQVRGLIESESWKEAQKQLRSSSPLLKQDLYTIIEYKPPAERPPLRK 143
           EA +  +  A+ ++ V+ LI+ ++W   Q  LRS +  L+ DL TII  KP  E+  L+ 
Sbjct: 122 EAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTIISSKPKDEKKSLKD 181

Query: 144 LYSLLFNNVTRMDYAARDKDAERVWQCYDNIVMAISDILSRI 186
           L + LF+ +  +DYAA+ K   +  + Y   V A++++L+++
Sbjct: 182 LTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 223

[Close]

BLAST of CmaCh04G022550 vs. TAIR10
Match: AT4G05180.1 (AT4G05180.1 photosystem II subunit Q-2)

HSP 1 Score: 64.3 bits (155), Expect = 9.0e-11
Identity = 30/102 (29.41%), Postives = 57/102 (55.88%), Query Frame = 1


Query: 84  EAESGIRGHAEAVLQVRGLIESESWKEAQKQLRSSSPLLKQDLYTIIEYKPPAERPPLRK 143
           EA +  +  A+ ++ V+  I+ ++W   Q  LR  +  L+ DL T+I  KP  E+  L+ 
Sbjct: 128 EAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRLRASYLRYDLNTVISAKPKEEKQSLKD 187

Query: 144 LYSLLFNNVTRMDYAARDKDAERVWQCYDNIVMAISDILSRI 186
           L + LF  +  +DYAAR K +    + Y   V +++++L+++
Sbjct: 188 LTAKLFQTIDNLDYAARSKSSPDAEKYYSETVSSLNNVLAKL 229

[Close]

BLAST of CmaCh04G022550 vs. NCBI nr
Match: gi|659126329|ref|XP_008463126.1| (PREDICTED: psbQ-like protein 3, chloroplastic [Cucumis melo])

HSP 1 Score: 260.8 bits (665), Expect = 1.8e-66
Identity = 139/185 (75.14%), Postives = 158/185 (85.41%), Query Frame = 1


Query: 1   MAELSPISVSNLSNRIHFSSSPPIISFQLFSITAKRCSNCRSISRRLGLGFMALMASSSV 60
           MA+L PIS+SNL+NRIHFSSSP  ISFQ F+ T     N ++ISRRLGLGF+ALMASS V
Sbjct: 1   MAKLIPISLSNLTNRIHFSSSPLTISFQSFNTTPNCSKNAKNISRRLGLGFIALMASS-V 60

Query: 61  ASTPVKITNALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIESESWKEAQKQLRSSSP 120
            + P ++ NAL+LKLIAPEQS +EAE GIRGHAEA+LQVR L+ESE+WKEAQK+LRS+S 
Sbjct: 61  TAIPAEVANALNLKLIAPEQSLDEAERGIRGHAEALLQVRSLMESEAWKEAQKRLRSTSA 120

Query: 121 LLKQDLYTIIEYKPPAERPPLRKLYSLLFNNVTRMDYAARDKDAERVWQCYDNIVMAISD 180
           LLKQDLYTIIEYKPPAERP LRKLYSLLFNNVTRMDYAARDKDA  V +CY  + MAISD
Sbjct: 121 LLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDAGGVRECYKKMEMAISD 180

Query: 181 ILSRI 186
           ILSRI
Sbjct: 181 ILSRI 184

[Close]

BLAST of CmaCh04G022550 vs. NCBI nr
Match: gi|449462369|ref|XP_004148913.1| (PREDICTED: psbQ-like protein 3, chloroplastic [Cucumis sativus])

HSP 1 Score: 257.3 bits (656), Expect = 2.0e-65
Identity = 138/185 (74.59%), Postives = 155/185 (83.78%), Query Frame = 1


Query: 1   MAELSPISVSNLSNRIHFSSSPPIISFQLFSITAKRCSNCRSISRRLGLGFMALMASSSV 60
           MA+L PIS+SNL+NRIHFS SP  ISF  F+ T    +N  +ISRRLGLGF+ALMASS V
Sbjct: 1   MAKLIPISLSNLTNRIHFSYSPLTISFPSFNTTPNCSNNATNISRRLGLGFIALMASS-V 60

Query: 61  ASTPVKITNALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIESESWKEAQKQLRSSSP 120
            + P ++ NALDLKLIAPEQS +EAESGIR HAEA+LQVR LIESE+WKEAQK+LRS+S 
Sbjct: 61  TAIPAEVANALDLKLIAPEQSLDEAESGIRRHAEALLQVRSLIESEAWKEAQKRLRSTSA 120

Query: 121 LLKQDLYTIIEYKPPAERPPLRKLYSLLFNNVTRMDYAARDKDAERVWQCYDNIVMAISD 180
           LLKQDLYTIIEYKPPAERP LRKLYSLLFNNVTRMDYAARDKD   VW+ Y  + MAISD
Sbjct: 121 LLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVGGVWESYKKMEMAISD 180

Query: 181 ILSRI 186
           ILSRI
Sbjct: 181 ILSRI 184

[Close]

BLAST of CmaCh04G022550 vs. NCBI nr
Match: gi|590651808|ref|XP_007032986.1| (Calcium ion binding protein, putative isoform 1 [Theobroma cacao])

HSP 1 Score: 180.3 bits (456), Expect = 3.2e-42
Identity = 92/144 (63.89%), Postives = 118/144 (81.94%), Query Frame = 1


Query: 42  SISRRLGLGFMALMASSSVASTPVKITNALDLKLIAPEQSFEEAESGIRGHAEAVLQVRG 101
           ++SRR+G+  +A MA   +          LDL+++APEQ+ EEAESG+  HA+A+LQVR 
Sbjct: 40  NMSRRVGV--IATMAPLLLIREETAC--GLDLRMVAPEQTLEEAESGVENHAKALLQVRD 99

Query: 102 LIESESWKEAQKQLRSSSPLLKQDLYTIIEYKPPAERPPLRKLYSLLFNNVTRMDYAARD 161
           LIES+SW+EAQKQLR SS LLKQD+YTII+ KP +ERPPLRKLYS LFNNVT++DYAARD
Sbjct: 100 LIESKSWREAQKQLRKSSSLLKQDIYTIIQGKPGSERPPLRKLYSNLFNNVTKLDYAARD 159

Query: 162 KDAERVWQCYDNIVMAISDILSRI 186
           +DA RVWQCYDNIV+A++DILS++
Sbjct: 160 EDASRVWQCYDNIVLALNDILSKL 179

[Close]

BLAST of CmaCh04G022550 vs. NCBI nr
Match: gi|703103288|ref|XP_010097690.1| (Oxygen-evolving enhancer protein 3-1 [Morus notabilis])

HSP 1 Score: 170.6 bits (431), Expect = 2.5e-39
Identity = 86/134 (64.18%), Postives = 109/134 (81.34%), Query Frame = 1


Query: 52  MALMASSSVASTPVKITNALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIESESWKEA 111
           M  +ASS   S   K  +ALD++++APEQ+ EEAESG+RGHA  +L+V+GLI+SESW +A
Sbjct: 1   MVSIASSMALSFDGKSASALDMRMVAPEQTVEEAESGVRGHALGLLEVKGLIDSESWGDA 60

Query: 112 QKQLRSSSPLLKQDLYTIIEYKPPAERPPLRKLYSLLFNNVTRMDYAARDKDAERVWQCY 171
           QK LR SS  LK+DLYTII+ +P +ERP LRKLY  LF+NVT++DYAARDKDA RV QCY
Sbjct: 61  QKFLRKSSSYLKRDLYTIIQARPSSERPQLRKLYFDLFSNVTKLDYAARDKDASRVLQCY 120

Query: 172 DNIVMAISDILSRI 186
           DNIV+A++DILSRI
Sbjct: 121 DNIVVALNDILSRI 134

[Close]

BLAST of CmaCh04G022550 vs. NCBI nr
Match: gi|1009110497|ref|XP_015895821.1| (PREDICTED: psbQ-like protein 3, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 167.9 bits (424), Expect = 1.6e-38
Identity = 89/136 (65.44%), Postives = 108/136 (79.41%), Query Frame = 1


Query: 53  ALMASSSVASTPV---KITNALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIESESWK 112
           A++AS  +A   V   ++   LDL+LIAP+QS +EAESGIRGHA A+LQV+ LI+SESW 
Sbjct: 47  AMIASLLLAREAVLKQEVAYGLDLRLIAPDQSIQEAESGIRGHARALLQVKALIDSESWV 106

Query: 113 EAQKQLRSSSPLLKQDLYTIIEYKPPAERPPLRKLYSLLFNNVTRMDYAARDKDAERVWQ 172
           EAQK LR SS LLKQD+YTII+ KP  ERP LRKLYS LFNNV+R+DYAARD D   V +
Sbjct: 107 EAQKALRKSSALLKQDVYTIIQNKPATERPQLRKLYSDLFNNVSRLDYAARDGDESSVLR 166

Query: 173 CYDNIVMAISDILSRI 186
           CY+NIV+A+SDILSRI
Sbjct: 167 CYENIVVALSDILSRI 182

The following BLAST results are available for this feature:

BLAST of CmaCh04G022550 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PQL3_ARATH	6.2e-22	48.62	PsbQ-like protein 3, chloroplastic OS=Arabidopsis thaliana GN=PQL3 PE=2 SV=1	[more]
PSBQ1_ARATH	2.5e-10	32.35	Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana GN=P...	[more]
PSBQ2_ARATH	1.6e-09	29.41	Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana GN=P...	[more]
PSBQ_ORYSI	7.4e-07	25.00	Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. indica ...	[more]
PSBQ_ORYSJ	7.4e-07	25.00	Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. japonic...	[more]

BLAST of CmaCh04G022550 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KT23_CUCSA	1.4e-65	74.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G315360 PE=4 SV=1	[more]
A0A061EGX6_THECC	2.2e-42	63.89	Calcium ion binding protein, putative isoform 1 OS=Theobroma cacao GN=TCM_019126...	[more]
W9RDE2_9ROSA	1.8e-39	64.18	Oxygen-evolving enhancer protein 3-1 OS=Morus notabilis GN=L484_023830 PE=4 SV=1	[more]
A5B0Z9_VITVI	1.9e-38	60.00	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006311 PE=4 SV=1	[more]
F6HNZ9_VITVI	1.9e-38	60.00	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0142g00310 PE=4 SV=...	[more]

BLAST of CmaCh04G022550 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G01918.1	3.5e-23	48.62	PsbQ-like 3	[more]
AT4G21280.2	1.4e-11	32.35	photosystem II subunit QA	[more]
AT4G05180.1	9.0e-11	29.41	photosystem II subunit Q-2	[more]

BLAST of CmaCh04G022550 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659126329\|ref\|XP_008463126.1\|	1.8e-66	75.14	PREDICTED: psbQ-like protein 3, chloroplastic [Cucumis melo]	[more]
gi\|449462369\|ref\|XP_004148913.1\|	2.0e-65	74.59	PREDICTED: psbQ-like protein 3, chloroplastic [Cucumis sativus]	[more]
gi\|590651808\|ref\|XP_007032986.1\|	3.2e-42	63.89	Calcium ion binding protein, putative isoform 1 [Theobroma cacao]	[more]
gi\|703103288\|ref\|XP_010097690.1\|	2.5e-39	64.18	Oxygen-evolving enhancer protein 3-1 [Morus notabilis]	[more]
gi\|1009110497\|ref\|XP_015895821.1\|	1.6e-38	65.44	PREDICTED: psbQ-like protein 3, chloroplastic [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008797	PSII_PsbQ
IPR023222	PsbQ-like_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0009523	photosystem II
GO:0009654	photosystem II oxygen evolving complex
GO:0019898	extrinsic component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009767	photosynthetic electron transport chain
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G022550.1	CmaCh04G022550.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008797	Oxygen-evolving enhancer protein 3	PFAM	PF05757	PsbQ	coord: 79..184 score: 9.6
IPR023222	PsbQ-like domain	GENE3D	G3DSA:1.20.120.290		coord: 71..185 score: 1.9
IPR023222	PsbQ-like domain	unknown	SSF101112	Oxygen-evolving enhancer protein 3,	coord: 78..185 score: 1.24
None	No IPR available	PANTHER	PTHR33399	FAMILY NOT NAMED	coord: 67..185 score: 4.2
None	No IPR available	PANTHER	PTHR33399:SF6	SUBFAMILY NOT NAMED	coord: 67..185 score: 4.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G022550	Cucsa.173440	Cucumber (Gy14) v1	cgycmaB0491
CmaCh04G022550	Cla009103	Watermelon (97103) v1	cmawmB711
CmaCh04G022550	Csa5G315360	Cucumber (Chinese Long) v2	cmacuB731
CmaCh04G022550	MELO3C025069	Melon (DHL92) v3.5.1	cmameB635
CmaCh04G022550	ClCG01G008280	Watermelon (Charleston Gray)	cmawcgB634
CmaCh04G022550	CSPI05G13290	Wild cucumber (PI 183967)	cmacpiB761
CmaCh04G022550	CmoCh04G023590	Cucurbita moschata (Rifu)	cmacmoB729
CmaCh04G022550	Lsi09G008750	Bottle gourd (USVL1VR-Ls)	cmalsiB622
CmaCh04G022550	Cp4.1LG01g19590	Cucurbita pepo (Zucchini)	cmacpeB721
CmaCh04G022550	MELO3C025069.2	Melon (DHL92) v3.6.1	cmamedB721
CmaCh04G022550	CsaV3_5G020220	Cucumber (Chinese Long) v3	cmacucB0868
CmaCh04G022550	Cla97C01G008630	Watermelon (97103) v2	cmawmbB705
CmaCh04G022550	CsGy5G013320	Cucumber (Gy14) v2	cgybcmaB654
CmaCh04G022550	Carg18301	Silver-seed gourd	carcmaB0738

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G022550	Cucurbita pepo (Zucchini)	cmacpeB705
CmaCh04G022550	Silver-seed gourd	carcmaB1150
CmaCh04G022550	Wax gourd	cmawgoB0827
CmaCh04G022550	Cucurbita maxima (Rimu)	cmacmaB325
CmaCh04G022550	Cucurbita moschata (Rifu)	cmacmoB693
CmaCh04G022550	Wild cucumber (PI 183967)	cmacpiB746