Csa5G315360 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa5G315360
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Oxygen-evolving enhancer protein 3; contains IPR008797 (Photosystem II PsbQ, oxygen evolving complex), IPR023222 (PsbQ-like domain)
Location	Chr5 : 12770661 .. 12771615 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAAGTCCCCACATTTCTTTACCATCTCAAAGAAGAAGAAAAAAGAGCTATTTTTGGTAATTGTCAATCTCTCTTTAAAATCTCTCCTTTGCTTACGTGGCACATTTCTATCATCTCACATCCATACATACTCACAGAATTTGCATAAAGCTTCACTCTCAGTACTCCAATGGCGAAATTAATCCCAATCTCACTCTCGAACCTCACCAATCGCATCCATTTCTCTTACTCTCCCCTTACAATCTCCTTCCCATCCTTTAATACCACACCCAATTGTTCTAATAACGCCACAAACATAAGCAGAAGGCTAGGGCTAGGATTCATAGCTTTAATGGCGTCGTCAGTAACCGCGATACCGGCAGAAGTGGCGAATGCTTTAGATCTGAAATTGATCGCGCCGGAGCAGAGCTTAGACGAAGCTGAGAGCGGAATCAGAAGGCACGCGGAAGCGCTTTTGCAGGTGAGAAGCTTAATCGAATCGGAAGCTTGGAAGGAAGCTCAGAAACGGCTGAGAAGCACTTCGGCGCTGCTTAAACAAGATCTGTACACTATAATTGAATACAAACCGCCGGCGGAGAGGCCTGCTCTTAGGAAACTCTATTCTCTTCTCTTCAACAATGTTACGCGAGTAAGTGTGTGATTATAATGAAGGCTTCTCATCTTGCATGATTTAAAGTGATGAAATGTTTGAAGAATTTTGTGGTGTGTTCTTGGATTTGATATGGATAATTCTCTTCTGTTTCTAGATGGATTATGCGGCGAGAGATAAAGATGTAGGAGGAGTTTGGGAGTCCTACAAGAAGATGGAAATGGCCATCTCTGATATTTTGTCAAGAATTTAAAAAGATTAGTGAAGGTTTTTTGTTCTGATTAATTCAATCCAATGAAATCGAAAATTTAGTATGGTGTTCTTCAAATCCGAGGATTCTAGTTCTTGATCAATCCAAGTGCGGAA

mRNA sequence

ATGGCGAAATTAATCCCAATCTCACTCTCGAACCTCACCAATCGCATCCATTTCTCTTACTCTCCCCTTACAATCTCCTTCCCATCCTTTAATACCACACCCAATTGTTCTAATAACGCCACAAACATAAGCAGAAGGCTAGGGCTAGGATTCATAGCTTTAATGGCGTCGTCAGTAACCGCGATACCGGCAGAAGTGGCGAATGCTTTAGATCTGAAATTGATCGCGCCGGAGCAGAGCTTAGACGAAGCTGAGAGCGGAATCAGAAGGCACGCGGAAGCGCTTTTGCAGGTGAGAAGCTTAATCGAATCGGAAGCTTGGAAGGAAGCTCAGAAACGGCTGAGAAGCACTTCGGCGCTGCTTAAACAAGATCTGTACACTATAATTGAATACAAACCGCCGGCGGAGAGGCCTGCTCTTAGGAAACTCTATTCTCTTCTCTTCAACAATGTTACGCGAATGGATTATGCGGCGAGAGATAAAGATGTAGGAGGAGTTTGGGAGTCCTACAAGAAGATGGAAATGGCCATCTCTGATATTTTGTCAAGAATTTAA

Coding sequence (CDS)

ATGGCGAAATTAATCCCAATCTCACTCTCGAACCTCACCAATCGCATCCATTTCTCTTACTCTCCCCTTACAATCTCCTTCCCATCCTTTAATACCACACCCAATTGTTCTAATAACGCCACAAACATAAGCAGAAGGCTAGGGCTAGGATTCATAGCTTTAATGGCGTCGTCAGTAACCGCGATACCGGCAGAAGTGGCGAATGCTTTAGATCTGAAATTGATCGCGCCGGAGCAGAGCTTAGACGAAGCTGAGAGCGGAATCAGAAGGCACGCGGAAGCGCTTTTGCAGGTGAGAAGCTTAATCGAATCGGAAGCTTGGAAGGAAGCTCAGAAACGGCTGAGAAGCACTTCGGCGCTGCTTAAACAAGATCTGTACACTATAATTGAATACAAACCGCCGGCGGAGAGGCCTGCTCTTAGGAAACTCTATTCTCTTCTCTTCAACAATGTTACGCGAATGGATTATGCGGCGAGAGATAAAGATGTAGGAGGAGTTTGGGAGTCCTACAAGAAGATGGAAATGGCCATCTCTGATATTTTGTCAAGAATTTAA

Protein sequence

MAKLIPISLSNLTNRIHFSYSPLTISFPSFNTTPNCSNNATNISRRLGLGFIALMASSVTAIPAEVANALDLKLIAPEQSLDEAESGIRRHAEALLQVRSLIESEAWKEAQKRLRSTSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVGGVWESYKKMEMAISDILSRI*

Homology

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BLAST of Csa5G315360 vs. Swiss-Prot
Match: PQL3_ARATH (PsbQ-like protein 3, chloroplastic OS=Arabidopsis thaliana GN=PQL3 PE=2 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.0e-20
Identity = 49/109 (44.95%), Postives = 72/109 (66.06%), Query Frame = 1


Query: 77  PEQSLDEAESGIRRHAEALLQVRSL-IESEAWKEAQKRLRSTSALLKQDLYTIIEYKPPA 136
           PE++++ A+ G+R++AE + +++ + IE + WKE  K LR +++ +KQD Y II+ KPP 
Sbjct: 79  PERTVELAQEGLRKNAENIKRIKEIMIEKKLWKEGGKELRRSASNMKQDFYLIIQAKPPK 138

Query: 137 ERPALRKLYSLLFNNVTRMDYAARDKDVGGVWESYKKMEMAISDILSRI 185
           +RP  R LYS LFN++T+MDYAARD D   V E Y  +   + DI  RI
Sbjct: 139 DRPLFRSLYSSLFNSITKMDYAARDGDETKVLEYYINIVAILDDIFPRI 187

[Close]

BLAST of Csa5G315360 vs. Swiss-Prot
Match: PSBQ1_ARATH (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana GN=PSBQ1 PE=1 SV=3)

HSP 1 Score: 67.0 bits (162), Expect = 2.5e-10
Identity = 45/172 (26.16%), Postives = 84/172 (48.84%), Query Frame = 1


Query: 44  SRRLGLGFIALMASSVTAIPAEVANALDLKLIAP--------------EQSLD------- 103
           SRR  +G +A   +  + + A +A+A+ +K+  P              +Q+ D       
Sbjct: 52  SRRSVIGLVAAGLAGGSFVQAVLADAISIKVGPPPAPSGGLPAGTDNSDQARDFALALKD 111

Query: 104 ----------EAESGIRRHAEALLQVRSLIESEAWKEAQKRLRSTSALLKQDLYTIIEYK 163
                     EA +  +  A+ ++ V+ LI+ +AW   Q  LRS ++ L+ DL TII  K
Sbjct: 112 RFYLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTIISSK 171

Query: 164 PPAERPALRKLYSLLFNNVTRMDYAARDKDVGGVWESYKKMEMAISDILSRI 185
           P  E+ +L+ L + LF+ +  +DYAA+ K      + Y +   A++++L+++
Sbjct: 172 PKDEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 223

[Close]

BLAST of Csa5G315360 vs. Swiss-Prot
Match: PSBQ2_ARATH (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana GN=PSBQ2 PE=1 SV=2)

HSP 1 Score: 64.3 bits (155), Expect = 1.6e-09
Identity = 31/102 (30.39%), Postives = 58/102 (56.86%), Query Frame = 1


Query: 83  EAESGIRRHAEALLQVRSLIESEAWKEAQKRLRSTSALLKQDLYTIIEYKPPAERPALRK 142
           EA +  +  A+ ++ V+S I+ +AW   Q  LR  ++ L+ DL T+I  KP  E+ +L+ 
Sbjct: 128 EAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRLRASYLRYDLNTVISAKPKEEKQSLKD 187

Query: 143 LYSLLFNNVTRMDYAARDKDVGGVWESYKKMEMAISDILSRI 185
           L + LF  +  +DYAAR K      + Y +   +++++L+++
Sbjct: 188 LTAKLFQTIDNLDYAARSKSSPDAEKYYSETVSSLNNVLAKL 229

[Close]

BLAST of Csa5G315360 vs. Swiss-Prot
Match: PSBQ1_MAIZE (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Zea mays GN=PSBQ1 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.8e-08
Identity = 29/102 (28.43%), Postives = 58/102 (56.86%), Query Frame = 1


Query: 83  EAESGIRRHAEALLQVRSLIESEAWKEAQKRLRSTSALLKQDLYTIIEYKPPAERPALRK 142
           EA + ++  A+ ++ ++ LI+ +AW   Q  LR  ++ L+ DL T+I  KP  E+ +L++
Sbjct: 115 EAAARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVIASKPKEEKKSLKE 174

Query: 143 LYSLLFNNVTRMDYAARDKDVGGVWESYKKMEMAISDILSRI 185
           L   LF+ +  +D+AA+ K      + +   + A+ D+L+++
Sbjct: 175 LTGKLFSTIDDLDHAAKIKSTPEAEKYFAATKDALGDVLAKL 216

[Close]

BLAST of Csa5G315360 vs. Swiss-Prot
Match: PSBQ2_MAIZE (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Zea mays GN=PSBQ2 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.3e-08
Identity = 29/102 (28.43%), Postives = 58/102 (56.86%), Query Frame = 1


Query: 83  EAESGIRRHAEALLQVRSLIESEAWKEAQKRLRSTSALLKQDLYTIIEYKPPAERPALRK 142
           EA + ++  A+ ++ ++ LI+ +AW   Q  LR  ++ L+ DL T+I  KP  E+ +L++
Sbjct: 111 EAVARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVIASKPKEEKKSLKE 170

Query: 143 LYSLLFNNVTRMDYAARDKDVGGVWESYKKMEMAISDILSRI 185
           L   LF+ +  +D+AA+ K      + +   + A+ D+L+++
Sbjct: 171 LTGKLFSTIDDLDHAAKMKSTPEAEKYFAATKDALGDVLAKL 212

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BLAST of Csa5G315360 vs. TrEMBL
Match: A0A0A0KT23_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G315360 PE=4 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 1.3e-95
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 1


Query: 1   MAKLIPISLSNLTNRIHFSYSPLTISFPSFNTTPNCSNNATNISRRLGLGFIALMASSVT 60
           MAKLIPISLSNLTNRIHFSYSPLTISFPSFNTTPNCSNNATNISRRLGLGFIALMASSVT
Sbjct: 1   MAKLIPISLSNLTNRIHFSYSPLTISFPSFNTTPNCSNNATNISRRLGLGFIALMASSVT 60

Query: 61  AIPAEVANALDLKLIAPEQSLDEAESGIRRHAEALLQVRSLIESEAWKEAQKRLRSTSAL 120
           AIPAEVANALDLKLIAPEQSLDEAESGIRRHAEALLQVRSLIESEAWKEAQKRLRSTSAL
Sbjct: 61  AIPAEVANALDLKLIAPEQSLDEAESGIRRHAEALLQVRSLIESEAWKEAQKRLRSTSAL 120

Query: 121 LKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVGGVWESYKKMEMAISDI 180
           LKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVGGVWESYKKMEMAISDI
Sbjct: 121 LKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVGGVWESYKKMEMAISDI 180

Query: 181 LSRI 185
           LSRI
Sbjct: 181 LSRI 184

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BLAST of Csa5G315360 vs. TrEMBL
Match: A0A061EGX6_THECC (Calcium ion binding protein, putative isoform 1 OS=Theobroma cacao GN=TCM_019126 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 2.3e-39
Identity = 86/144 (59.72%), Postives = 117/144 (81.25%), Query Frame = 1


Query: 41  TNISRRLGLGFIALMASSVTAIPAEVANALDLKLIAPEQSLDEAESGIRRHAEALLQVRS 100
           +N+SRR+G+  IA MA  +  I  E A  LDL+++APEQ+L+EAESG+  HA+ALLQVR 
Sbjct: 39  SNMSRRVGV--IATMAP-LLLIREETACGLDLRMVAPEQTLEEAESGVENHAKALLQVRD 98

Query: 101 LIESEAWKEAQKRLRSTSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARD 160
           LIES++W+EAQK+LR +S+LLKQD+YTII+ KP +ERP LRKLYS LFNNVT++DYAARD
Sbjct: 99  LIESKSWREAQKQLRKSSSLLKQDIYTIIQGKPGSERPPLRKLYSNLFNNVTKLDYAARD 158

Query: 161 KDVGGVWESYKKMEMAISDILSRI 185
           +D   VW+ Y  + +A++DILS++
Sbjct: 159 EDASRVWQCYDNIVLALNDILSKL 179

[Close]

BLAST of Csa5G315360 vs. TrEMBL
Match: F6HNZ9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0142g00310 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.9e-38
Identity = 89/148 (60.14%), Postives = 112/148 (75.68%), Query Frame = 1


Query: 41  TNISRRLGLGFIALMASSVTAIPA----EVANALDLKLIAPEQSLDEAESGIRRHAEALL 100
           +N +RR+G   IA MA  + A  A    ++AN  D K++AP Q+L+EAESGIR HA ALL
Sbjct: 84  SNFTRRIGA--IATMAKVLLAREAIFNVKIANGFDFKMVAPGQTLEEAESGIRGHALALL 143

Query: 101 QVRSLIESEAWKEAQKRLRSTSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDY 160
           QV++LIESEAWK+ QK LR +S+LLKQD+YTII+ KP + RP LRKLYS LFNNVTR+DY
Sbjct: 144 QVKALIESEAWKDMQKALRKSSSLLKQDIYTIIQSKPGSMRPQLRKLYSNLFNNVTRLDY 203

Query: 161 AARDKDVGGVWESYKKMEMAISDILSRI 185
           AARD D   VWE Y+K+ + + DILSRI
Sbjct: 204 AARDNDATQVWEYYEKIAITLDDILSRI 229

[Close]

BLAST of Csa5G315360 vs. TrEMBL
Match: A5B0Z9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006311 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.9e-38
Identity = 89/148 (60.14%), Postives = 112/148 (75.68%), Query Frame = 1


Query: 41  TNISRRLGLGFIALMASSVTAIPA----EVANALDLKLIAPEQSLDEAESGIRRHAEALL 100
           +N +RR+G   IA MA  + A  A    ++AN  D K++AP Q+L+EAESGIR HA ALL
Sbjct: 39  SNFTRRIGA--IATMAKVLLAREAIFNVKIANGFDFKMVAPGQTLEEAESGIRGHALALL 98

Query: 101 QVRSLIESEAWKEAQKRLRSTSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDY 160
           QV++LIESEAWK+ QK LR +S+LLKQD+YTII+ KP + RP LRKLYS LFNNVTR+DY
Sbjct: 99  QVKALIESEAWKDMQKALRKSSSLLKQDIYTIIQSKPGSMRPQLRKLYSNLFNNVTRLDY 158

Query: 161 AARDKDVGGVWESYKKMEMAISDILSRI 185
           AARD D   VWE Y+K+ + + DILSRI
Sbjct: 159 AARDNDATQVWEYYEKIAITLDDILSRI 184

[Close]

BLAST of Csa5G315360 vs. TrEMBL
Match: A0A067E6V8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030036mg PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.5e-35
Identity = 80/147 (54.42%), Postives = 114/147 (77.55%), Query Frame = 1


Query: 42  NISRRLGLGFIALMASSVTAIPA----EVANALDLKLIAPEQSLDEAESGIRRHAEALLQ 101
           NISRR+G+  IA+ AS++ A  A    ++ANA + +++AP+Q++++AESGIR HA++LL 
Sbjct: 40  NISRRIGV--IAVTASTMLAREAIFREDIANAFEFRMVAPDQTVEQAESGIRYHAQSLLH 99

Query: 102 VRSLIESEAWKEAQKRLRSTSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYA 161
           V++L+ESE+W E QK LR++SA LKQD+YT+I  KP  ERP LRKLYS LFN VT++DYA
Sbjct: 100 VKALLESESWSEVQKALRASSASLKQDIYTLINNKPATERPQLRKLYSDLFNGVTKLDYA 159

Query: 162 ARDKDVGGVWESYKKMEMAISDILSRI 185
           ARDKDV  V + Y+ + +A+  ILSR+
Sbjct: 160 ARDKDVSRVHQCYENVVVALDSILSRL 184

[Close]

BLAST of Csa5G315360 vs. TAIR10
Match: AT2G01918.1 (AT2G01918.1 PsbQ-like 3)

HSP 1 Score: 100.5 bits (249), Expect = 1.1e-21
Identity = 49/109 (44.95%), Postives = 72/109 (66.06%), Query Frame = 1


Query: 77  PEQSLDEAESGIRRHAEALLQVRSL-IESEAWKEAQKRLRSTSALLKQDLYTIIEYKPPA 136
           PE++++ A+ G+R++AE + +++ + IE + WKE  K LR +++ +KQD Y II+ KPP 
Sbjct: 79  PERTVELAQEGLRKNAENIKRIKEIMIEKKLWKEGGKELRRSASNMKQDFYLIIQAKPPK 138

Query: 137 ERPALRKLYSLLFNNVTRMDYAARDKDVGGVWESYKKMEMAISDILSRI 185
           +RP  R LYS LFN++T+MDYAARD D   V E Y  +   + DI  RI
Sbjct: 139 DRPLFRSLYSSLFNSITKMDYAARDGDETKVLEYYINIVAILDDIFPRI 187

[Close]

BLAST of Csa5G315360 vs. TAIR10
Match: AT4G21280.2 (AT4G21280.2 photosystem II subunit QA)

HSP 1 Score: 67.0 bits (162), Expect = 1.4e-11
Identity = 45/172 (26.16%), Postives = 84/172 (48.84%), Query Frame = 1


Query: 44  SRRLGLGFIALMASSVTAIPAEVANALDLKLIAP--------------EQSLD------- 103
           SRR  +G +A   +  + + A +A+A+ +K+  P              +Q+ D       
Sbjct: 52  SRRSVIGLVAAGLAGGSFVQAVLADAISIKVGPPPAPSGGLPAGTDNSDQARDFALALKD 111

Query: 104 ----------EAESGIRRHAEALLQVRSLIESEAWKEAQKRLRSTSALLKQDLYTIIEYK 163
                     EA +  +  A+ ++ V+ LI+ +AW   Q  LRS ++ L+ DL TII  K
Sbjct: 112 RFYLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTIISSK 171

Query: 164 PPAERPALRKLYSLLFNNVTRMDYAARDKDVGGVWESYKKMEMAISDILSRI 185
           P  E+ +L+ L + LF+ +  +DYAA+ K      + Y +   A++++L+++
Sbjct: 172 PKDEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 223

[Close]

BLAST of Csa5G315360 vs. TAIR10
Match: AT4G05180.1 (AT4G05180.1 photosystem II subunit Q-2)

HSP 1 Score: 64.3 bits (155), Expect = 9.0e-11
Identity = 31/102 (30.39%), Postives = 58/102 (56.86%), Query Frame = 1


Query: 83  EAESGIRRHAEALLQVRSLIESEAWKEAQKRLRSTSALLKQDLYTIIEYKPPAERPALRK 142
           EA +  +  A+ ++ V+S I+ +AW   Q  LR  ++ L+ DL T+I  KP  E+ +L+ 
Sbjct: 128 EAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRLRASYLRYDLNTVISAKPKEEKQSLKD 187

Query: 143 LYSLLFNNVTRMDYAARDKDVGGVWESYKKMEMAISDILSRI 185
           L + LF  +  +DYAAR K      + Y +   +++++L+++
Sbjct: 188 LTAKLFQTIDNLDYAARSKSSPDAEKYYSETVSSLNNVLAKL 229

[Close]

BLAST of Csa5G315360 vs. NCBI nr
Match: gi|449462369|ref|XP_004148913.1| (PREDICTED: psbQ-like protein 3, chloroplastic [Cucumis sativus])

HSP 1 Score: 357.1 bits (915), Expect = 1.9e-95
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 1


Query: 1   MAKLIPISLSNLTNRIHFSYSPLTISFPSFNTTPNCSNNATNISRRLGLGFIALMASSVT 60
           MAKLIPISLSNLTNRIHFSYSPLTISFPSFNTTPNCSNNATNISRRLGLGFIALMASSVT
Sbjct: 1   MAKLIPISLSNLTNRIHFSYSPLTISFPSFNTTPNCSNNATNISRRLGLGFIALMASSVT 60

Query: 61  AIPAEVANALDLKLIAPEQSLDEAESGIRRHAEALLQVRSLIESEAWKEAQKRLRSTSAL 120
           AIPAEVANALDLKLIAPEQSLDEAESGIRRHAEALLQVRSLIESEAWKEAQKRLRSTSAL
Sbjct: 61  AIPAEVANALDLKLIAPEQSLDEAESGIRRHAEALLQVRSLIESEAWKEAQKRLRSTSAL 120

Query: 121 LKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVGGVWESYKKMEMAISDI 180
           LKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVGGVWESYKKMEMAISDI
Sbjct: 121 LKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVGGVWESYKKMEMAISDI 180

Query: 181 LSRI 185
           LSRI
Sbjct: 181 LSRI 184

[Close]

BLAST of Csa5G315360 vs. NCBI nr
Match: gi|659126329|ref|XP_008463126.1| (PREDICTED: psbQ-like protein 3, chloroplastic [Cucumis melo])

HSP 1 Score: 329.3 bits (843), Expect = 4.2e-87
Identity = 173/184 (94.02%), Postives = 175/184 (95.11%), Query Frame = 1


Query: 1   MAKLIPISLSNLTNRIHFSYSPLTISFPSFNTTPNCSNNATNISRRLGLGFIALMASSVT 60
           MAKLIPISLSNLTNRIHFS SPLTISF SFNTTPNCS NA NISRRLGLGFIALMASSVT
Sbjct: 1   MAKLIPISLSNLTNRIHFSSSPLTISFQSFNTTPNCSKNAKNISRRLGLGFIALMASSVT 60

Query: 61  AIPAEVANALDLKLIAPEQSLDEAESGIRRHAEALLQVRSLIESEAWKEAQKRLRSTSAL 120
           AIPAEVANAL+LKLIAPEQSLDEAE GIR HAEALLQVRSL+ESEAWKEAQKRLRSTSAL
Sbjct: 61  AIPAEVANALNLKLIAPEQSLDEAERGIRGHAEALLQVRSLMESEAWKEAQKRLRSTSAL 120

Query: 121 LKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVGGVWESYKKMEMAISDI 180
           LKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKD GGV E YKKMEMAISDI
Sbjct: 121 LKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDAGGVRECYKKMEMAISDI 180

Query: 181 LSRI 185
           LSRI
Sbjct: 181 LSRI 184

[Close]

BLAST of Csa5G315360 vs. NCBI nr
Match: gi|590651808|ref|XP_007032986.1| (Calcium ion binding protein, putative isoform 1 [Theobroma cacao])

HSP 1 Score: 170.2 bits (430), Expect = 3.3e-39
Identity = 86/144 (59.72%), Postives = 117/144 (81.25%), Query Frame = 1


Query: 41  TNISRRLGLGFIALMASSVTAIPAEVANALDLKLIAPEQSLDEAESGIRRHAEALLQVRS 100
           +N+SRR+G+  IA MA  +  I  E A  LDL+++APEQ+L+EAESG+  HA+ALLQVR 
Sbjct: 39  SNMSRRVGV--IATMAP-LLLIREETACGLDLRMVAPEQTLEEAESGVENHAKALLQVRD 98

Query: 101 LIESEAWKEAQKRLRSTSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARD 160
           LIES++W+EAQK+LR +S+LLKQD+YTII+ KP +ERP LRKLYS LFNNVT++DYAARD
Sbjct: 99  LIESKSWREAQKQLRKSSSLLKQDIYTIIQGKPGSERPPLRKLYSNLFNNVTKLDYAARD 158

Query: 161 KDVGGVWESYKKMEMAISDILSRI 185
           +D   VW+ Y  + +A++DILS++
Sbjct: 159 EDASRVWQCYDNIVLALNDILSKL 179

[Close]

BLAST of Csa5G315360 vs. NCBI nr
Match: gi|147853522|emb|CAN78534.1| (hypothetical protein VITISV_006311 [Vitis vinifera])

HSP 1 Score: 167.2 bits (422), Expect = 2.8e-38
Identity = 89/148 (60.14%), Postives = 112/148 (75.68%), Query Frame = 1


Query: 41  TNISRRLGLGFIALMASSVTAIPA----EVANALDLKLIAPEQSLDEAESGIRRHAEALL 100
           +N +RR+G   IA MA  + A  A    ++AN  D K++AP Q+L+EAESGIR HA ALL
Sbjct: 39  SNFTRRIGA--IATMAKVLLAREAIFNVKIANGFDFKMVAPGQTLEEAESGIRGHALALL 98

Query: 101 QVRSLIESEAWKEAQKRLRSTSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDY 160
           QV++LIESEAWK+ QK LR +S+LLKQD+YTII+ KP + RP LRKLYS LFNNVTR+DY
Sbjct: 99  QVKALIESEAWKDMQKALRKSSSLLKQDIYTIIQSKPGSMRPQLRKLYSNLFNNVTRLDY 158

Query: 161 AARDKDVGGVWESYKKMEMAISDILSRI 185
           AARD D   VWE Y+K+ + + DILSRI
Sbjct: 159 AARDNDATQVWEYYEKIAITLDDILSRI 184

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BLAST of Csa5G315360 vs. NCBI nr
Match: gi|225446877|ref|XP_002283897.1| (PREDICTED: psbQ-like protein 3, chloroplastic [Vitis vinifera])

HSP 1 Score: 167.2 bits (422), Expect = 2.8e-38
Identity = 89/148 (60.14%), Postives = 112/148 (75.68%), Query Frame = 1


Query: 41  TNISRRLGLGFIALMASSVTAIPA----EVANALDLKLIAPEQSLDEAESGIRRHAEALL 100
           +N +RR+G   IA MA  + A  A    ++AN  D K++AP Q+L+EAESGIR HA ALL
Sbjct: 39  SNFTRRIGA--IATMAKVLLAREAIFNVKIANGFDFKMVAPGQTLEEAESGIRGHALALL 98

Query: 101 QVRSLIESEAWKEAQKRLRSTSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDY 160
           QV++LIESEAWK+ QK LR +S+LLKQD+YTII+ KP + RP LRKLYS LFNNVTR+DY
Sbjct: 99  QVKALIESEAWKDMQKALRKSSSLLKQDIYTIIQSKPGSMRPQLRKLYSNLFNNVTRLDY 158

Query: 161 AARDKDVGGVWESYKKMEMAISDILSRI 185
           AARD D   VWE Y+K+ + + DILSRI
Sbjct: 159 AARDNDATQVWEYYEKIAITLDDILSRI 184

The following BLAST results are available for this feature:

BLAST of Csa5G315360 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PQL3_ARATH	2.0e-20	44.95	PsbQ-like protein 3, chloroplastic OS=Arabidopsis thaliana GN=PQL3 PE=2 SV=1	[more]
PSBQ1_ARATH	2.5e-10	26.16	Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana GN=P...	[more]
PSBQ2_ARATH	1.6e-09	30.39	Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana GN=P...	[more]
PSBQ1_MAIZE	1.8e-08	28.43	Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Zea mays GN=PSBQ1 PE=2 SV...	[more]
PSBQ2_MAIZE	2.3e-08	28.43	Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Zea mays GN=PSBQ2 PE=3 SV...	[more]

BLAST of Csa5G315360 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KT23_CUCSA	1.3e-95	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G315360 PE=4 SV=1	[more]
A0A061EGX6_THECC	2.3e-39	59.72	Calcium ion binding protein, putative isoform 1 OS=Theobroma cacao GN=TCM_019126...	[more]
F6HNZ9_VITVI	1.9e-38	60.14	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0142g00310 PE=4 SV=...	[more]
A5B0Z9_VITVI	1.9e-38	60.14	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006311 PE=4 SV=1	[more]
A0A067E6V8_CITSI	1.5e-35	54.42	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030036mg PE=4 SV=1	[more]

BLAST of Csa5G315360 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G01918.1	1.1e-21	44.95	PsbQ-like 3	[more]
AT4G21280.2	1.4e-11	26.16	photosystem II subunit QA	[more]
AT4G05180.1	9.0e-11	30.39	photosystem II subunit Q-2	[more]

BLAST of Csa5G315360 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449462369\|ref\|XP_004148913.1\|	1.9e-95	100.00	PREDICTED: psbQ-like protein 3, chloroplastic [Cucumis sativus]	[more]
gi\|659126329\|ref\|XP_008463126.1\|	4.2e-87	94.02	PREDICTED: psbQ-like protein 3, chloroplastic [Cucumis melo]	[more]
gi\|590651808\|ref\|XP_007032986.1\|	3.3e-39	59.72	Calcium ion binding protein, putative isoform 1 [Theobroma cacao]	[more]
gi\|147853522\|emb\|CAN78534.1\|	2.8e-38	60.14	hypothetical protein VITISV_006311 [Vitis vinifera]	[more]
gi\|225446877\|ref\|XP_002283897.1\|	2.8e-38	60.14	PREDICTED: psbQ-like protein 3, chloroplastic [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008797	PSII_PsbQ
IPR023222	PsbQ-like_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0009523	photosystem II
GO:0009654	photosystem II oxygen evolving complex
GO:0019898	extrinsic component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009767	photosynthetic electron transport chain
biological_process	GO:0015979	photosynthesis
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0005515	protein binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU114482	cucumber EST collection version 3.0	transcribed_cluster
CU167277	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa5G315360.1	Csa5G315360.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU167277	CU167277	transcribed_cluster
CU114482	CU114482	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008797	Oxygen-evolving enhancer protein 3	PFAM	PF05757	PsbQ	coord: 77..183 score: 5.9
IPR023222	PsbQ-like domain	GENE3D	G3DSA:1.20.120.290		coord: 69..184 score: 1.1
IPR023222	PsbQ-like domain	unknown	SSF101112	Oxygen-evolving enhancer protein 3,	coord: 77..184 score: 6.54
None	No IPR available	PANTHER	PTHR33399	FAMILY NOT NAMED	coord: 1..184 score: 4.1
None	No IPR available	PANTHER	PTHR33399:SF6	SUBFAMILY NOT NAMED	coord: 1..184 score: 4.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa5G315360	Cla009103	Watermelon (97103) v1	cuwmB412
Csa5G315360	MELO3C025069	Melon (DHL92) v3.5.1	cumeB365
Csa5G315360	ClCG01G008280	Watermelon (Charleston Gray)	cuwcgB367
Csa5G315360	Lsi09G008750	Bottle gourd (USVL1VR-Ls)	culsiB325
Csa5G315360	MELO3C025069.2	Melon (DHL92) v3.6.1	cumedB344
Csa5G315360	Cla97C01G008630	Watermelon (97103) v2	cuwmbB339
Csa5G315360	BhiUN384G53	Wax gourd	cuwgoB486
Csa5G315360	CSPI05G13290	Wild cucumber (PI 183967)	cpicuB255
Csa5G315360	Cucsa.173440	Cucumber (Gy14) v1	cgycuB264
Csa5G315360	CmaCh04G022550	Cucurbita maxima (Rimu)	cmacuB731
Csa5G315360	CmoCh04G023590	Cucurbita moschata (Rifu)	cmocuB722
Csa5G315360	Cp4.1LG01g19590	Cucurbita pepo (Zucchini)	cpecuB423
Csa5G315360	CsGy5G013320	Cucumber (Gy14) v2	cgybcuB223
Csa5G315360	Carg18301	Silver-seed gourd	carcuB0557

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa5G315360	Cucurbita maxima (Rimu)	cmacuB304
Csa5G315360	Cucurbita moschata (Rifu)	cmocuB292
Csa5G315360	Cucurbita pepo (Zucchini)	cpecuB180
Csa5G315360	Silver-seed gourd	carcuB0844
Csa5G315360	Wax gourd	cuwgoB441