CSPI05G13290 (gene) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GCTATTTTTGGTAATTGTCAATCTCTCTTTAAAATCTCTCCTTTGCTTACGTGGCACATTTCTATCATCTCACATCCATACATACTCACAGAGTTTGCATAAAGCTTCACTCTCAGTACTCCAATGGCGAAATTAATCCCAATCTCACTCTCGAACCTCACCAATCGCATCCATTTCTCTTACTCTCCCCTTACAATCTCCTTCCCATCCTTTAATACCACACCCAATTGTTCTAATAACGCCACAAACATAAGCAGAAGGCTAGGGCTAGGATTCATAGCTTTAATGGCGTCGTCAGTAACCGCGATACCGGCAGAAGTGGCGAATGCTTTAGATCTGAAATTGATCGCGCCGGAGCAGAGCTTAGACGAAGCTGAGAGCGGAATCAGAAGGCACGCGGAAGCGCTTTTGCAGGTGAGAAGCTTAATCGAATCGGAAGCTTGGAAGGAAGCTCAGAAACGGCTGAGAAGCACTTCGGCGCTGCTTAAACAAGATCTGTACACTATAATTGAATACAAACCGCCGGCGGAGAGGCCTGCTCTTAGGAAACTCTATTCTCTTCTCTTCAACAATGTTACGCGAGTAAGTGTGTGATTATAATGAAGGCTTCTCATCTTGCATGATTTAAAGTGATGAAATGTTTGAAGAATTTTGTGGTGTGTTCTTGGATTTGATATGGATAATTCTCTTCTGTTTCTAGATGGATTATGCGGCGAGAGATAAAGATGTAGGAGGAGTTTGGGAGTCCTACAAGAAGATGGAAATGGCCATCTCTCATATTTTGTCAAGAATTTAAAAAGATTAGTGAAGGTTTTTTGTTCTGAACAATTCA ATGGCGAAATTAATCCCAATCTCACTCTCGAACCTCACCAATCGCATCCATTTCTCTTACTCTCCCCTTACAATCTCCTTCCCATCCTTTAATACCACACCCAATTGTTCTAATAACGCCACAAACATAAGCAGAAGGCTAGGGCTAGGATTCATAGCTTTAATGGCGTCGTCAGTAACCGCGATACCGGCAGAAGTGGCGAATGCTTTAGATCTGAAATTGATCGCGCCGGAGCAGAGCTTAGACGAAGCTGAGAGCGGAATCAGAAGGCACGCGGAAGCGCTTTTGCAGGTGAGAAGCTTAATCGAATCGGAAGCTTGGAAGGAAGCTCAGAAACGGCTGAGAAGCACTTCGGCGCTGCTTAAACAAGATCTGTACACTATAATTGAATACAAACCGCCGGCGGAGAGGCCTGCTCTTAGGAAACTCTATTCTCTTCTCTTCAACAATGTTACGCGAATGGATTATGCGGCGAGAGATAAAGATGTAGGAGGAGTTTGGGAGTCCTACAAGAAGATGGAAATGGCCATCTCTCATATTTTGTCAAGAATTTAA ATGGCGAAATTAATCCCAATCTCACTCTCGAACCTCACCAATCGCATCCATTTCTCTTACTCTCCCCTTACAATCTCCTTCCCATCCTTTAATACCACACCCAATTGTTCTAATAACGCCACAAACATAAGCAGAAGGCTAGGGCTAGGATTCATAGCTTTAATGGCGTCGTCAGTAACCGCGATACCGGCAGAAGTGGCGAATGCTTTAGATCTGAAATTGATCGCGCCGGAGCAGAGCTTAGACGAAGCTGAGAGCGGAATCAGAAGGCACGCGGAAGCGCTTTTGCAGGTGAGAAGCTTAATCGAATCGGAAGCTTGGAAGGAAGCTCAGAAACGGCTGAGAAGCACTTCGGCGCTGCTTAAACAAGATCTGTACACTATAATTGAATACAAACCGCCGGCGGAGAGGCCTGCTCTTAGGAAACTCTATTCTCTTCTCTTCAACAATGTTACGCGAATGGATTATGCGGCGAGAGATAAAGATGTAGGAGGAGTTTGGGAGTCCTACAAGAAGATGGAAATGGCCATCTCTCATATTTTGTCAAGAATTTAA
BLAST of CSPI05G13290 vs. Swiss-Prot
Match: PQL3_ARATH (PsbQ-like protein 3, chloroplastic OS=Arabidopsis thaliana GN=PQL3 PE=2 SV=1) HSP 1 Score: 97.8 bits (242), Expect = 1.3e-19 Identity = 48/109 (44.04%), Postives = 73/109 (66.97%), Query Frame = 1
BLAST of CSPI05G13290 vs. Swiss-Prot
Match: PSBQ1_ARATH (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana GN=PSBQ1 PE=1 SV=3) HSP 1 Score: 64.3 bits (155), Expect = 1.6e-09 Identity = 45/172 (26.16%), Postives = 84/172 (48.84%), Query Frame = 1
BLAST of CSPI05G13290 vs. Swiss-Prot
Match: PSBQ2_ARATH (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana GN=PSBQ2 PE=1 SV=2) HSP 1 Score: 64.3 bits (155), Expect = 1.6e-09 Identity = 31/102 (30.39%), Postives = 59/102 (57.84%), Query Frame = 1
BLAST of CSPI05G13290 vs. Swiss-Prot
Match: PSBQ1_MAIZE (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Zea mays GN=PSBQ1 PE=2 SV=1) HSP 1 Score: 58.2 bits (139), Expect = 1.1e-07 Identity = 28/102 (27.45%), Postives = 59/102 (57.84%), Query Frame = 1
BLAST of CSPI05G13290 vs. Swiss-Prot
Match: PSBQ2_MAIZE (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Zea mays GN=PSBQ2 PE=3 SV=1) HSP 1 Score: 57.8 bits (138), Expect = 1.5e-07 Identity = 28/102 (27.45%), Postives = 59/102 (57.84%), Query Frame = 1
BLAST of CSPI05G13290 vs. TrEMBL
Match: A0A0A0KT23_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G315360 PE=4 SV=1) HSP 1 Score: 349.4 bits (895), Expect = 2.8e-93 Identity = 183/184 (99.46%), Postives = 183/184 (99.46%), Query Frame = 1
BLAST of CSPI05G13290 vs. TrEMBL
Match: A0A061EGX6_THECC (Calcium ion binding protein, putative isoform 1 OS=Theobroma cacao GN=TCM_019126 PE=4 SV=1) HSP 1 Score: 165.2 bits (417), Expect = 7.4e-38 Identity = 85/144 (59.03%), Postives = 116/144 (80.56%), Query Frame = 1
BLAST of CSPI05G13290 vs. TrEMBL
Match: A5B0Z9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006311 PE=4 SV=1) HSP 1 Score: 162.2 bits (409), Expect = 6.2e-37 Identity = 88/148 (59.46%), Postives = 111/148 (75.00%), Query Frame = 1
BLAST of CSPI05G13290 vs. TrEMBL
Match: F6HNZ9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0142g00310 PE=4 SV=1) HSP 1 Score: 162.2 bits (409), Expect = 6.2e-37 Identity = 88/148 (59.46%), Postives = 111/148 (75.00%), Query Frame = 1
BLAST of CSPI05G13290 vs. TrEMBL
Match: A0A067E6V8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030036mg PE=4 SV=1) HSP 1 Score: 155.2 bits (391), Expect = 7.6e-35 Identity = 80/147 (54.42%), Postives = 114/147 (77.55%), Query Frame = 1
BLAST of CSPI05G13290 vs. TAIR10
Match: AT2G01918.1 (AT2G01918.1 PsbQ-like 3) HSP 1 Score: 97.8 bits (242), Expect = 7.3e-21 Identity = 48/109 (44.04%), Postives = 73/109 (66.97%), Query Frame = 1
BLAST of CSPI05G13290 vs. TAIR10
Match: AT4G21280.2 (AT4G21280.2 photosystem II subunit QA) HSP 1 Score: 64.3 bits (155), Expect = 9.0e-11 Identity = 45/172 (26.16%), Postives = 84/172 (48.84%), Query Frame = 1
BLAST of CSPI05G13290 vs. TAIR10
Match: AT4G05180.1 (AT4G05180.1 photosystem II subunit Q-2) HSP 1 Score: 64.3 bits (155), Expect = 9.0e-11 Identity = 31/102 (30.39%), Postives = 59/102 (57.84%), Query Frame = 1
BLAST of CSPI05G13290 vs. NCBI nr
Match: gi|449462369|ref|XP_004148913.1| (PREDICTED: psbQ-like protein 3, chloroplastic [Cucumis sativus]) HSP 1 Score: 349.4 bits (895), Expect = 4.0e-93 Identity = 183/184 (99.46%), Postives = 183/184 (99.46%), Query Frame = 1
BLAST of CSPI05G13290 vs. NCBI nr
Match: gi|659126329|ref|XP_008463126.1| (PREDICTED: psbQ-like protein 3, chloroplastic [Cucumis melo]) HSP 1 Score: 321.6 bits (823), Expect = 8.8e-85 Identity = 172/184 (93.48%), Postives = 174/184 (94.57%), Query Frame = 1
BLAST of CSPI05G13290 vs. NCBI nr
Match: gi|590651808|ref|XP_007032986.1| (Calcium ion binding protein, putative isoform 1 [Theobroma cacao]) HSP 1 Score: 165.2 bits (417), Expect = 1.1e-37 Identity = 85/144 (59.03%), Postives = 116/144 (80.56%), Query Frame = 1
BLAST of CSPI05G13290 vs. NCBI nr
Match: gi|147853522|emb|CAN78534.1| (hypothetical protein VITISV_006311 [Vitis vinifera]) HSP 1 Score: 162.2 bits (409), Expect = 9.0e-37 Identity = 88/148 (59.46%), Postives = 111/148 (75.00%), Query Frame = 1
BLAST of CSPI05G13290 vs. NCBI nr
Match: gi|225446877|ref|XP_002283897.1| (PREDICTED: psbQ-like protein 3, chloroplastic [Vitis vinifera]) HSP 1 Score: 162.2 bits (409), Expect = 9.0e-37 Identity = 88/148 (59.46%), Postives = 111/148 (75.00%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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