Carg18301-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg18301-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	psbQ-like protein 3, chloroplastic
Location	Cucurbita_argyrosperma_scaffold_120 : 573641 .. 574644 (+)
Sequence length	873

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCTTCTCGTTTCTATAAATAGACAGAGATCAGGATGAAGCCTCACTCTGTACTTCAATGGCGGAATTAAGCCCAATCTCAGTCTCGAACCTCAGTAATCGTATCCATTTCTCTTCTTCTTCTCCTCCTATAAACTCCTCCCAATTGTTCAGCATCACCGCCAAGCGTTGTAGCAATTGCAGAAGCATAAGCAGAAGATTAGGTCTGGGATTGATAGCTTTAATGGCGTCGTCGTCTGTAGCCTCGACGCCTGTGAGAATAGCGAATGCTTTGGATCTGAAATTGATAGCGCCGGAGCAGAGCTTCGAGGAGGCGGAGAGCGGAATCAGAGGCCATGCGGAAGCGGTTTTGCAGGTGAGAGGTTTAATTGAATCGGAGTCTTGGAAGGAAGCGCAGAAGCAGTTGAGAACCAGTTCGCCGCTGCTGAAACAGGATCTGTACACTATAATTGAATATAAACCGCCTGCCGAGCGACCTCCTCTCAGGAAACTCTATTCTCTTCTCTTCAACAATGTTACTCGAGTAAGTTTGATTTGATCGTTTGAAGCTTGACAATGCCTTAATGATCTTCTTCAATTCAACTCTTCTGTTCTTCAATTCAACTCTTCTGTTCTTCAATTCAACTCCTGTTCTTCAATTTTGACGATTTGCAGATGGATTATGCAGCGAGAGATAAAGATGCGGAACGAGTTCGGCAGTGCTACGATAACATTGAGATGGCCATTTCTGACATTTTATCCAGAATTTAGAAAGATAAACGAAGGTTCTCGATTCTCCAGCCAATGATCGTAATACTCTTTCCAATCTTTTGTTTTTCGATCTTATAACTTGGCATATAAACACAAAGTATTGGAAATAACATGTAGAATATAATGATGAACGTGCATTGCATACAATTTAGTGCCGAAGTTTGGATCTCAAATAGTGTTATCATCAAATAGATATCACAATCGTCACATTCAAACGTGCATATTCCTGGAGATTGTTCTTTGCAGAAAAAAGAA

mRNA sequence

AGCTTCTCGTTTCTATAAATAGACAGAGATCAGGATGAAGCCTCACTCTGTACTTCAATGGCGGAATTAAGCCCAATCTCAGTCTCGAACCTCAGTAATCGTATCCATTTCTCTTCTTCTTCTCCTCCTATAAACTCCTCCCAATTGTTCAGCATCACCGCCAAGCGTTGTAGCAATTGCAGAAGCATAAGCAGAAGATTAGGTCTGGGATTGATAGCTTTAATGGCGTCGTCGTCTGTAGCCTCGACGCCTGTGAGAATAGCGAATGCTTTGGATCTGAAATTGATAGCGCCGGAGCAGAGCTTCGAGGAGGCGGAGAGCGGAATCAGAGGCCATGCGGAAGCGGTTTTGCAGGTGAGAGGTTTAATTGAATCGGAGTCTTGGAAGGAAGCGCAGAAGCAGTTGAGAACCAGTTCGCCGCTGCTGAAACAGGATCTGTACACTATAATTGAATATAAACCGCCTGCCGAGCGACCTCCTCTCAGGAAACTCTATTCTCTTCTCTTCAACAATGTTACTCGAATGGATTATGCAGCGAGAGATAAAGATGCGGAACGAGTTCGGCAGTGCTACGATAACATTGAGATGGCCATTTCTGACATTTTATCCAGAATTTAGAAAGATAAACGAAGGTTCTCGATTCTCCAGCCAATGATCGTAATACTCTTTCCAATCTTTTGTTTTTCGATCTTATAACTTGGCATATAAACACAAAGTATTGGAAATAACATGTAGAATATAATGATGAACGTGCATTGCATACAATTTAGTGCCGAAGTTTGGATCTCAAATAGTGTTATCATCAAATAGATATCACAATCGTCACATTCAAACGTGCATATTCCTGGAGATTGTTCTTTGCAGAAAAAAGAA

Coding sequence (CDS)

ATGGCGGAATTAAGCCCAATCTCAGTCTCGAACCTCAGTAATCGTATCCATTTCTCTTCTTCTTCTCCTCCTATAAACTCCTCCCAATTGTTCAGCATCACCGCCAAGCGTTGTAGCAATTGCAGAAGCATAAGCAGAAGATTAGGTCTGGGATTGATAGCTTTAATGGCGTCGTCGTCTGTAGCCTCGACGCCTGTGAGAATAGCGAATGCTTTGGATCTGAAATTGATAGCGCCGGAGCAGAGCTTCGAGGAGGCGGAGAGCGGAATCAGAGGCCATGCGGAAGCGGTTTTGCAGGTGAGAGGTTTAATTGAATCGGAGTCTTGGAAGGAAGCGCAGAAGCAGTTGAGAACCAGTTCGCCGCTGCTGAAACAGGATCTGTACACTATAATTGAATATAAACCGCCTGCCGAGCGACCTCCTCTCAGGAAACTCTATTCTCTTCTCTTCAACAATGTTACTCGAATGGATTATGCAGCGAGAGATAAAGATGCGGAACGAGTTCGGCAGTGCTACGATAACATTGAGATGGCCATTTCTGACATTTTATCCAGAATTTAG

Protein sequence

MAELSPISVSNLSNRIHFSSSSPPINSSQLFSITAKRCSNCRSISRRLGLGLIALMASSSVASTPVRIANALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIESESWKEAQKQLRTSSPLLKQDLYTIIEYKPPAERPPLRKLYSLLFNNVTRMDYAARDKDAERVRQCYDNIEMAISDILSRI

Homology

[Close]

BLAST of Carg18301-RA vs. NCBI nr
Match: XP_022962345.1 (psbQ-like protein 3, chloroplastic isoform X1 [Cucurbita moschata])

HSP 1 Score: 348.6 bits (893), Expect = 1.3e-92
Identity = 185/186 (99.46%), Postives = 185/186 (99.46%), Query Frame = 0


Query: 1   MAELSPISVSNLSNRIHFSSSSPPINSSQLFSITAKRCSNCRSISRRLGLGLIALMASSS 60
           MAELSPISVSNLSNRIHFSSSSPPINSSQLFSITAKRCSNCRSISRRLGLGLIALMASSS
Sbjct: 1   MAELSPISVSNLSNRIHFSSSSPPINSSQLFSITAKRCSNCRSISRRLGLGLIALMASSS 60

Query: 61  VASTPVRIANALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIESESWKEAQKQLRTSS 120
           VASTPVRIANALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIESESWKEAQKQLRTSS
Sbjct: 61  VASTPVRIANALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIESESWKEAQKQLRTSS 120

Query: 121 PLLKQDLYTIIEYKPPAERPPLRKLYSLLFNNVTRMDYAARDKDAERVRQCYDNIEMAIS 180
           PLLKQDLYTIIEYKPPAERPPLRKLYSLLFNNVTRMDYAARDKDAERVRQCYDNI MAIS
Sbjct: 121 PLLKQDLYTIIEYKPPAERPPLRKLYSLLFNNVTRMDYAARDKDAERVRQCYDNIVMAIS 180

Query: 181 DILSRI 187
           DILSRI
Sbjct: 181 DILSRI 186

[Close]

BLAST of Carg18301-RA vs. NCBI nr
Match: XP_023551782.1 (psbQ-like protein 3, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 330.1 bits (845), Expect = 4.9e-87
Identity = 179/190 (94.21%), Postives = 182/190 (95.79%), Query Frame = 0


Query: 1   MAELSPISVSNLSNRIHFSSSSPPINSSQLFSITAKRCSNC----RSISRRLGLGLIALM 60
           MAELSPISVSNLSNRIHFSSSSPPI S QLFSITAKRCSNC    RSISRRLGLGLIALM
Sbjct: 1   MAELSPISVSNLSNRIHFSSSSPPIISVQLFSITAKRCSNCRSISRSISRRLGLGLIALM 60

Query: 61  ASSSVASTPVRIANALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIESESWKEAQKQL 120
           ASSSVASTPV+IANALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIESESWKEAQKQL
Sbjct: 61  ASSSVASTPVKIANALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIESESWKEAQKQL 120

Query: 121 RTSSPLLKQDLYTIIEYKPPAERPPLRKLYSLLFNNVTRMDYAARDKDAERVRQCYDNIE 180
           R+SSPLLKQDLYTIIEYKPPAERPPLR+LYSLLFNNVTRMDYAARDKDAERV QCYDNI 
Sbjct: 121 RSSSPLLKQDLYTIIEYKPPAERPPLRRLYSLLFNNVTRMDYAARDKDAERVWQCYDNIV 180

Query: 181 MAISDILSRI 187
           MAISDILSRI
Sbjct: 181 MAISDILSRI 190

[Close]

BLAST of Carg18301-RA vs. NCBI nr
Match: XP_022991100.1 (psbQ-like protein 3, chloroplastic isoform X1 [Cucurbita maxima])

HSP 1 Score: 327.0 bits (837), Expect = 4.1e-86
Identity = 176/186 (94.62%), Postives = 179/186 (96.24%), Query Frame = 0


Query: 1   MAELSPISVSNLSNRIHFSSSSPPINSSQLFSITAKRCSNCRSISRRLGLGLIALMASSS 60
           MAELSPISVSNLSNRIHF SSSPPI S QLFSITAKRCSNCRSISRRLGLG +ALMASSS
Sbjct: 1   MAELSPISVSNLSNRIHF-SSSPPIISFQLFSITAKRCSNCRSISRRLGLGFMALMASSS 60

Query: 61  VASTPVRIANALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIESESWKEAQKQLRTSS 120
           VASTPV+I NALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIESESWKEAQKQLR+SS
Sbjct: 61  VASTPVKITNALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIESESWKEAQKQLRSSS 120

Query: 121 PLLKQDLYTIIEYKPPAERPPLRKLYSLLFNNVTRMDYAARDKDAERVRQCYDNIEMAIS 180
           PLLKQDLYTIIEYKPPAERPPLRKLYSLLFNNVTRMDYAARDKDAERV QCYDNI MAIS
Sbjct: 121 PLLKQDLYTIIEYKPPAERPPLRKLYSLLFNNVTRMDYAARDKDAERVWQCYDNIVMAIS 180

Query: 181 DILSRI 187
           DILSRI
Sbjct: 181 DILSRI 185

[Close]

BLAST of Carg18301-RA vs. NCBI nr
Match: XP_022962354.1 (uncharacterized protein LOC111462819 isoform X2 [Cucurbita moschata])

HSP 1 Score: 292.7 bits (748), Expect = 8.6e-76
Identity = 156/163 (95.71%), Postives = 159/163 (97.55%), Query Frame = 0


Query: 1   MAELSPISVSNLSNRIHFSSSSPPINSSQLFSITAKRCSNCRSISRRLGLGLIALMASSS 60
           MAELSPISVSNLSNRIHFSSSSPPINSSQLFSITAKRCSNCRSISRRLGLGLIALMASSS
Sbjct: 1   MAELSPISVSNLSNRIHFSSSSPPINSSQLFSITAKRCSNCRSISRRLGLGLIALMASSS 60

Query: 61  VASTPVRIANALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIESESWKEAQKQLRTSS 120
           VASTPVRIANALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIESESWKEAQKQLRTSS
Sbjct: 61  VASTPVRIANALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIESESWKEAQKQLRTSS 120

Query: 121 PLLKQDLYTIIEYKPPAERPPLRKLYSLLFNNVTRMDYAARDK 164
           PLLKQDLYTIIEYKPPAERPPLRKLYSLLFNNVTR +   R++
Sbjct: 121 PLLKQDLYTIIEYKPPAERPPLRKLYSLLFNNVTRREIKMRNE 163

[Close]

BLAST of Carg18301-RA vs. NCBI nr
Match: XP_022991101.1 (uncharacterized protein LOC111487796 isoform X2 [Cucurbita maxima])

HSP 1 Score: 274.2 bits (700), Expect = 3.2e-70
Identity = 148/163 (90.80%), Postives = 154/163 (94.48%), Query Frame = 0


Query: 1   MAELSPISVSNLSNRIHFSSSSPPINSSQLFSITAKRCSNCRSISRRLGLGLIALMASSS 60
           MAELSPISVSNLSNRIHF SSSPPI S QLFSITAKRCSNCRSISRRLGLG +ALMASSS
Sbjct: 1   MAELSPISVSNLSNRIHF-SSSPPIISFQLFSITAKRCSNCRSISRRLGLGFMALMASSS 60

Query: 61  VASTPVRIANALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIESESWKEAQKQLRTSS 120
           VASTPV+I NALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIESESWKEAQKQLR+SS
Sbjct: 61  VASTPVKITNALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIESESWKEAQKQLRSSS 120

Query: 121 PLLKQDLYTIIEYKPPAERPPLRKLYSLLFNNVTRMDYAARDK 164
           PLLKQDLYTIIEYKPPAERPPLRKLYSLLFNNVTR +   R++
Sbjct: 121 PLLKQDLYTIIEYKPPAERPPLRKLYSLLFNNVTRREIKMRNE 162

[Close]

BLAST of Carg18301-RA vs. TAIR10
Match: AT2G01918.1 (PsbQ-like 3)

HSP 1 Score: 102.4 bits (254), Expect = 3.0e-22
Identity = 52/109 (47.71%), Postives = 74/109 (67.89%), Query Frame = 0


Query: 79  PEQSFEEAESGIRGHAEAVLQVRG-LIESESWKEAQKQLRTSSPLLKQDLYTIIEYKPPA 138
           PE++ E A+ G+R +AE + +++  +IE + WKE  K+LR S+  +KQD Y II+ KPP 
Sbjct: 79  PERTVELAQEGLRKNAENIKRIKEIMIEKKLWKEGGKELRRSASNMKQDFYLIIQAKPPK 138

Query: 139 ERPPLRKLYSLLFNNVTRMDYAARDKDAERVRQCYDNIEMAISDILSRI 187
           +RP  R LYS LFN++T+MDYAARD D  +V + Y NI   + DI  RI
Sbjct: 139 DRPLFRSLYSSLFNSITKMDYAARDGDETKVLEYYINIVAILDDIFPRI 187

[Close]

BLAST of Carg18301-RA vs. TAIR10
Match: AT3G01440.1 (PsbQ-like 1)

HSP 1 Score: 44.3 bits (103), Expect = 9.6e-05
Identity = 23/97 (23.71%), Postives = 49/97 (50.52%), Query Frame = 0


Query: 90  IRGHAEAVLQVRGLIESESWKEAQKQLRTSSPLLKQDLYTIIEYKPPAERPPLRKLYSLL 149
           ++ +A  +L +  LI  ++    +K LR  S  L  D   +I      ++ PL  L + L
Sbjct: 123 VKKNAFDLLAMEDLIGPDTLNYVKKYLRLKSTFLFYDFDNLISAAASEDKQPLTDLANRL 182

Query: 150 FNNVTRMDYAARDKDAERVRQCYDNIEMAISDILSRI 187
           F+N  +++ AA+ K+      CY + +  + ++++R+
Sbjct: 183 FDNFEKLEDAAKTKNLAETESCYKDTKFLLQEVMTRM 219

[Close]

BLAST of Carg18301-RA vs. Swiss-Prot
Match: sp|Q2V4B2|PQL3_ARATH (PsbQ-like protein 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PQL3 PE=2 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 5.4e-21
Identity = 52/109 (47.71%), Postives = 74/109 (67.89%), Query Frame = 0


Query: 79  PEQSFEEAESGIRGHAEAVLQVRG-LIESESWKEAQKQLRTSSPLLKQDLYTIIEYKPPA 138
           PE++ E A+ G+R +AE + +++  +IE + WKE  K+LR S+  +KQD Y II+ KPP 
Sbjct: 79  PERTVELAQEGLRKNAENIKRIKEIMIEKKLWKEGGKELRRSASNMKQDFYLIIQAKPPK 138

Query: 139 ERPPLRKLYSLLFNNVTRMDYAARDKDAERVRQCYDNIEMAISDILSRI 187
           +RP  R LYS LFN++T+MDYAARD D  +V + Y NI   + DI  RI
Sbjct: 139 DRPLFRSLYSSLFNSITKMDYAARDGDETKVLEYYINIVAILDDIFPRI 187

[Close]

BLAST of Carg18301-RA vs. TrEMBL
Match: tr|A0A1S3CIJ1|A0A1S3CIJ1_CUCME (psbQ-like protein 3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501351 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 1.5e-63
Identity = 139/186 (74.73%), Postives = 157/186 (84.41%), Query Frame = 0


Query: 1   MAELSPISVSNLSNRIHFSSSSPPINSSQLFSITAKRCSNCRSISRRLGLGLIALMASSS 60
           MA+L PIS+SNL+NRIHF SSSP   S Q F+ T     N ++ISRRLGLG IALMA SS
Sbjct: 1   MAKLIPISLSNLTNRIHF-SSSPLTISFQSFNTTPNCSKNAKNISRRLGLGFIALMA-SS 60

Query: 61  VASTPVRIANALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIESESWKEAQKQLRTSS 120
           V + P  +ANAL+LKLIAPEQS +EAE GIRGHAEA+LQVR L+ESE+WKEAQK+LR++S
Sbjct: 61  VTAIPAEVANALNLKLIAPEQSLDEAERGIRGHAEALLQVRSLMESEAWKEAQKRLRSTS 120

Query: 121 PLLKQDLYTIIEYKPPAERPPLRKLYSLLFNNVTRMDYAARDKDAERVRQCYDNIEMAIS 180
            LLKQDLYTIIEYKPPAERP LRKLYSLLFNNVTRMDYAARDKDA  VR+CY  +EMAIS
Sbjct: 121 ALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDAGGVRECYKKMEMAIS 180

Query: 181 DILSRI 187
           DILSRI
Sbjct: 181 DILSRI 184

[Close]

BLAST of Carg18301-RA vs. TrEMBL
Match: tr|A0A0A0KT23|A0A0A0KT23_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G315360 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 5.7e-60
Identity = 136/186 (73.12%), Postives = 152/186 (81.72%), Query Frame = 0


Query: 1   MAELSPISVSNLSNRIHFSSSSPPINSSQLFSITAKRCSNCRSISRRLGLGLIALMASSS 60
           MA+L PIS+SNL+NRIHF S SP   S   F+ T    +N  +ISRRLGLG IALMA SS
Sbjct: 1   MAKLIPISLSNLTNRIHF-SYSPLTISFPSFNTTPNCSNNATNISRRLGLGFIALMA-SS 60

Query: 61  VASTPVRIANALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIESESWKEAQKQLRTSS 120
           V + P  +ANALDLKLIAPEQS +EAESGIR HAEA+LQVR LIESE+WKEAQK+LR++S
Sbjct: 61  VTAIPAEVANALDLKLIAPEQSLDEAESGIRRHAEALLQVRSLIESEAWKEAQKRLRSTS 120

Query: 121 PLLKQDLYTIIEYKPPAERPPLRKLYSLLFNNVTRMDYAARDKDAERVRQCYDNIEMAIS 180
            LLKQDLYTIIEYKPPAERP LRKLYSLLFNNVTRMDYAARDKD   V + Y  +EMAIS
Sbjct: 121 ALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVGGVWESYKKMEMAIS 180

Query: 181 DILSRI 187
           DILSRI
Sbjct: 181 DILSRI 184

[Close]

BLAST of Carg18301-RA vs. TrEMBL
Match: tr|A0A061EGX6|A0A061EGX6_THECC (Calcium ion binding protein, putative isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_019126 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 5.0e-40
Identity = 92/144 (63.89%), Postives = 117/144 (81.25%), Query Frame = 0


Query: 43  SISRRLGLGLIALMASSSVASTPVRIANALDLKLIAPEQSFEEAESGIRGHAEAVLQVRG 102
           ++SRR  +G+IA MA   +       A  LDL+++APEQ+ EEAESG+  HA+A+LQVR 
Sbjct: 40  NMSRR--VGVIATMAPLLLIRE--ETACGLDLRMVAPEQTLEEAESGVENHAKALLQVRD 99

Query: 103 LIESESWKEAQKQLRTSSPLLKQDLYTIIEYKPPAERPPLRKLYSLLFNNVTRMDYAARD 162
           LIES+SW+EAQKQLR SS LLKQD+YTII+ KP +ERPPLRKLYS LFNNVT++DYAARD
Sbjct: 100 LIESKSWREAQKQLRKSSSLLKQDIYTIIQGKPGSERPPLRKLYSNLFNNVTKLDYAARD 159

Query: 163 KDAERVRQCYDNIEMAISDILSRI 187
           +DA RV QCYDNI +A++DILS++
Sbjct: 160 EDASRVWQCYDNIVLALNDILSKL 179

[Close]

BLAST of Carg18301-RA vs. TrEMBL
Match: tr|A0A2P5EPT1|A0A2P5EPT1_9ROSA (Oxygen-evolving enhancer protein OS=Trema orientalis OX=63057 GN=TorRG33x02_166630 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 7.3e-39
Identity = 86/140 (61.43%), Postives = 110/140 (78.57%), Query Frame = 0


Query: 47  RLGLGLIALMASSSVASTPVRIANALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIES 106
           R G  ++  +A+S V +   ++AN LD++L+AP+Q+ EEA+SGIRGHA A+LQV+  I+S
Sbjct: 43  RRGFVVMVAIAASLVLNFDGKLANGLDMELVAPDQTLEEAQSGIRGHALALLQVKAFIDS 102

Query: 107 ESWKEAQKQLRTSSPLLKQDLYTIIEYKPPAERPPLRKLYSLLFNNVTRMDYAARDKDAE 166
           ESW EAQK LR SS  +KQD YTII+ +P +ERP LRKLY  LFNNVT++DYAARDKDA 
Sbjct: 103 ESWGEAQKALRRSSAYVKQDFYTIIQGRPASERPQLRKLYFDLFNNVTKLDYAARDKDAS 162

Query: 167 RVRQCYDNIEMAISDILSRI 187
           RV QCYDNI M I+DILSR+
Sbjct: 163 RVLQCYDNIVMTINDILSRV 182

[Close]

BLAST of Carg18301-RA vs. TrEMBL
Match: tr|A0A2P5C6M3|A0A2P5C6M3_PARAD (Oxygen-evolving enhancer protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_178950 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 3.6e-38
Identity = 86/140 (61.43%), Postives = 109/140 (77.86%), Query Frame = 0


Query: 47  RLGLGLIALMASSSVASTPVRIANALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIES 106
           R G  ++  +A+S V +   ++AN LDL+L+AP+Q+ EEA+SGIRGHA A+LQV+  I+S
Sbjct: 43  RRGFVVMVAIAASLVLNFNGKLANGLDLELVAPDQTLEEAQSGIRGHALALLQVKAFIDS 102

Query: 107 ESWKEAQKQLRTSSPLLKQDLYTIIEYKPPAERPPLRKLYSLLFNNVTRMDYAARDKDAE 166
           ESW EAQK LR SS  +KQD YTII+ +P +ERP LRKLY  LFNNVT++DYAARDKDA 
Sbjct: 103 ESWGEAQKALRRSSAYVKQDFYTIIQGRPASERPQLRKLYFDLFNNVTKLDYAARDKDAS 162

Query: 167 RVRQCYDNIEMAISDILSRI 187
           RV QCY NI M I+DILSR+
Sbjct: 163 RVLQCYHNIVMTINDILSRV 182

The following BLAST results are available for this feature:

BLAST of Carg18301-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022962345.1	1.3e-92	99.46	psbQ-like protein 3, chloroplastic isoform X1 [Cucurbita moschata]	[more]
XP_023551782.1	4.9e-87	94.21	psbQ-like protein 3, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022991100.1	4.1e-86	94.62	psbQ-like protein 3, chloroplastic isoform X1 [Cucurbita maxima]	[more]
XP_022962354.1	8.6e-76	95.71	uncharacterized protein LOC111462819 isoform X2 [Cucurbita moschata]	[more]
XP_022991101.1	3.2e-70	90.80	uncharacterized protein LOC111487796 isoform X2 [Cucurbita maxima]	[more]

BLAST of Carg18301-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT2G01918.1	3.0e-22	47.71	PsbQ-like 3	[more]
AT3G01440.1	9.6e-05	23.71	PsbQ-like 1	[more]

BLAST of Carg18301-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q2V4B2\|PQL3_ARATH	5.4e-21	47.71	PsbQ-like protein 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PQL3 PE=2 ...	[more]

BLAST of Carg18301-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CIJ1\|A0A1S3CIJ1_CUCME	1.5e-63	74.73	psbQ-like protein 3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501351 PE=4 ...	[more]
tr\|A0A0A0KT23\|A0A0A0KT23_CUCSA	5.7e-60	73.12	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G315360 PE=4 SV=1	[more]
tr\|A0A061EGX6\|A0A061EGX6_THECC	5.0e-40	63.89	Calcium ion binding protein, putative isoform 1 OS=Theobroma cacao OX=3641 GN=TC...	[more]
tr\|A0A2P5EPT1\|A0A2P5EPT1_9ROSA	7.3e-39	61.43	Oxygen-evolving enhancer protein OS=Trema orientalis OX=63057 GN=TorRG33x02_1666...	[more]
tr\|A0A2P5C6M3\|A0A2P5C6M3_PARAD	3.6e-38	61.43	Oxygen-evolving enhancer protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

Vocabulary: **Cellular Component**
Term	Definition
GO:0009523	photosystem II
GO:0009654	photosystem II oxygen evolving complex
GO:0019898	extrinsic component of membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR023222	PsbQ-like_dom_sf
IPR008797	PSII_PsbQ

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0009654	photosystem II oxygen evolving complex
molecular_function	GO:0005509	calcium ion binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg18301	Carg18301	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg18301-RA	Carg18301-RA-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg18301-RA.exon.1	Carg18301-RA.exon.1	exon
Carg18301-RA.exon.2	Carg18301-RA.exon.2	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg18301-RA.five_prime_UTR.1	Carg18301-RA.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg18301-RA.CDS.1	Carg18301-RA.CDS.1	CDS
Carg18301-RA.CDS.2	Carg18301-RA.CDS.2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg18301-RA.three_prime_UTR.1	Carg18301-RA.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:1.20.120.290		coord: 58..186 e-value: 5.7E-32 score: 112.8
None	No IPR available	PANTHER	PTHR33399:SF6	PSBQ-LIKE PROTEIN 3, CHLOROPLASTIC	coord: 20..186
IPR008797	Oxygen-evolving enhancer protein 3	PFAM	PF05757	PsbQ	coord: 80..185 e-value: 1.3E-18 score: 67.3
IPR008797	Oxygen-evolving enhancer protein 3	PANTHER	PTHR33399	FAMILY NOT NAMED	coord: 20..186
IPR023222	PsbQ-like domain superfamily	SUPERFAMILY	SSF101112	Oxygen-evolving enhancer protein 3,	coord: 79..186