Carg08174 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg08174
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Thionin-like protein
Location	Cucurbita_argyrosperma_scaffold_050 : 1130968 .. 1131930 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAATCTACGGCAGCGACGACGGTGGCGATTCTGTGCTTCATCCTACTCTCTGCGGCAGCGACTACGGTTTCAGCCGACGCCGCAGACTGCATCGACGGCTGCTTCACCGCCTGTGTCCAGAAAGACAGTGAGTATTTTTGATCTTCCGATTTCCTCTCTAAACTAAATCCTTCTTCCAATTGAAACCCTAATTTGCTTCTCTTAGCGATTCTGAAAATCTCTGCGTTTTTCATTTGTATGTAATTTCAGAAATTGGTTTTCGAATCTGTTAAAATTAGGGCTAAATTAACCTAAAAGAAAAACCCTAAATTTTATACTTATTTTTATTTATTTAGATTATTATCAAATAATTCATTTAATAATTAAATAATTATATGACCTAAAAATAAGTAACAAAAAGTACTGTAAAATAAATAAATAAATAAATAAATATAATAAGTAACAAAAAGTTGGCTATGGTGCAGCGAGACTGATGCAGCGTTGTGAGGGCAAGTGCAGGATTAAATGCGGTCCAGGTATTCAAATTAATTTTTATAATTTAATTTATTTTTTAAATTTCCGAACTTTATCTTATTTTAATTTAATTTAATTTAATTAACTTCAACTAATTAAAATACATATATTAGTTTTAAGTAAGAAAATATTTTTATTTGTTTAAATTAAGAGAAGATTTTATTTATGTAACTTTATAATTAAAATATGTTTGCAGATACTAAATTTGAAGGCGAAGATATTATTGCTTAAAAGCAACTGAGGAGAGAAATAAATAAGGAAATATAATTATAAATTAATGTTTCTCGTGTCTTAATAATCATTGTCGTGTTTGTAAACTCTAAAATCTCAGTAAGATTGTGTAATGTTTTGTGTTTCTAATTAATATGTTTTTAAGTCTGGTTTGATAACTACTTAATCTTTTAGCGTTCATATTTTTTAAAAAAATATATTAAATTTTTTTAA

mRNA sequence

ATGAAGAAATCTACGGCAGCGACGACGGTGGCGATTCTGTGCTTCATCCTACTCTCTGCGGCAGCGACTACGGTTTCAGCCGACGCCGCAGACTGCATCGACGGCTGCTTCACCGCCTGTGTCCAGAAAGACACGAGACTGATGCAGCGTTGTGAGGGCAAGTGCAGGATTAAATGCGGTCCAGATACTAAATTTGAAGGCGAAGATATTATTGCTTAAAAGCAACTGAGGAGAGAAATAAATAAGGAAATATAATTATAAATTAATGTTTCTCGTGTCTTAATAATCATTGTCGTGTTTGTAAACTCTAAAATCTCAGTAAGATTGTGTAATGTTTTGTGTTTCTAATTAATATGTTTTTAAGTCTGGTTTGATAACTACTTAATCTTTTAGCGTTCATATTTTTTAAAAAAATATATTAAATTTTTTTAA

Coding sequence (CDS)

ATGAAGAAATCTACGGCAGCGACGACGGTGGCGATTCTGTGCTTCATCCTACTCTCTGCGGCAGCGACTACGGTTTCAGCCGACGCCGCAGACTGCATCGACGGCTGCTTCACCGCCTGTGTCCAGAAAGACACGAGACTGATGCAGCGTTGTGAGGGCAAGTGCAGGATTAAATGCGGTCCAGATACTAAATTTGAAGGCGAAGATATTATTGCTTAA

Protein sequence

MKKSTAATTVAILCFILLSAAATTVSADAADCIDGCFTACVQKDTRLMQRCEGKCRIKCGPDTKFEGEDIIA

Homology

[Close]

BLAST of Carg08174 vs. NCBI nr
Match: KGN57551.1 (hypothetical protein Csa_3G209970 [Cucumis sativus])

HSP 1 Score: 91.3 bits (225), Expect = 1.5e-15
Identity = 46/59 (77.97%), Postives = 49/59 (83.05%), Query Frame = 0


Query: 8  TTVAILCFILLSAAATTVSADAADCIDGCFTACVQKDTRLMQRCEGKCRIKCGPDTKFE 67
          + VAILC +LLS A  TVSADAADCIDGCFTACVQKD+R MQRCE KC IKCGPD K E
Sbjct: 4  SAVAILCLLLLS-AVVTVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCGPDNKVE 61

[Close]

BLAST of Carg08174 vs. NCBI nr
Match: XP_008456107.1 (PREDICTED: uncharacterized protein LOC103496144 isoform X2 [Cucumis melo])

HSP 1 Score: 87.0 bits (214), Expect = 2.8e-14
Identity = 38/43 (88.37%), Postives = 40/43 (93.02%), Query Frame = 0


Query: 24 TVSADAADCIDGCFTACVQKDTRLMQRCEGKCRIKCGPDTKFE 67
          TVSADAADCID CFTACVQKDTR+MQRCEGKCRIKCGPD K +
Sbjct: 24 TVSADAADCIDACFTACVQKDTRVMQRCEGKCRIKCGPDNKVD 66

[Close]

BLAST of Carg08174 vs. NCBI nr
Match: XP_016901882.1 (PREDICTED: uncharacterized protein LOC103496144 isoform X1 [Cucumis melo])

HSP 1 Score: 77.4 bits (189), Expect = 2.2e-11
Identity = 37/52 (71.15%), Postives = 39/52 (75.00%), Query Frame = 0


Query: 24 TVSADAADCIDGCFTACVQKD---------TRLMQRCEGKCRIKCGPDTKFE 67
          TVSADAADCID CFTACVQKD          R+MQRCEGKCRIKCGPD K +
Sbjct: 24 TVSADAADCIDACFTACVQKDNGWVGCCGAARVMQRCEGKCRIKCGPDNKVD 75

[Close]

BLAST of Carg08174 vs. NCBI nr
Match: KOM54025.1 (hypothetical protein LR48_Vigan09g268400 [Vigna angularis] >BAT86815.1 hypothetical protein VIGAN_05013000 [Vigna angularis var. angularis])

HSP 1 Score: 70.1 bits (170), Expect = 3.5e-09
Identity = 35/61 (57.38%), Postives = 45/61 (73.77%), Query Frame = 0


Query: 1  MKKSTAATTVAILCFILLSAAATTVSADAADCIDGCFTACVQKDTRLMQRCEGKCRIKCG 60
          MKK  AAT    + F+L+++   +V  DAADC+DGC TACVQ+D+RL QRCE KC I+CG
Sbjct: 1  MKKMMAAT----MLFLLIASQMESVVPDAADCLDGCSTACVQRDSRLTQRCERKCSIRCG 57

Query: 61 P 62
          P
Sbjct: 61 P 57

[Close]

BLAST of Carg08174 vs. NCBI nr
Match: XP_010103864.1 (uncharacterized protein LOC21406914 [Morus notabilis] >EXB97305.1 hypothetical protein L484_024166 [Morus notabilis])

HSP 1 Score: 68.9 bits (167), Expect = 7.8e-09
Identity = 30/57 (52.63%), Postives = 42/57 (73.68%), Query Frame = 0


Query: 8  TTVAILCFILLSAAATTVSADAADCIDGCFTACVQKDTRLMQRCEGKCRIKCGPDTK 65
          T +A+   +L  + +   +A   DCID C+T CVQ++TRLMQRCEGKCRI+CGPD++
Sbjct: 7  TGIAVFVLLLALSYSEIATAGPEDCIDSCYTGCVQRNTRLMQRCEGKCRIRCGPDSE 63

[Close]

BLAST of Carg08174 vs. TAIR10
Match: AT1G25275.3 (unknown protein)

HSP 1 Score: 52.8 bits (125), Expect = 1.0e-07
Identity = 30/70 (42.86%), Postives = 40/70 (57.14%), Query Frame = 0


Query: 1  MKKSTAATTVAILCFILLSAAATTVSADA----ADCIDGCFTACVQKDTRLMQRCEGKCR 60
          MKK    T VA L  ++   ++  + A+A     DC DGC TACVQ+D R   RC+ KC 
Sbjct: 2  MKKQ--VTIVAALLIMMALCSSLNMVAEAQLGPGDCYDGCSTACVQRDPRKTSRCDRKCS 61

Query: 61 IKCGPDTKFE 67
          I+CGP   +E
Sbjct: 62 IRCGPGKHYE 69

[Close]

BLAST of Carg08174 vs. TrEMBL
Match: tr|A0A0A0LC00|A0A0A0LC00_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G209970 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 9.7e-16
Identity = 46/59 (77.97%), Postives = 49/59 (83.05%), Query Frame = 0


Query: 8  TTVAILCFILLSAAATTVSADAADCIDGCFTACVQKDTRLMQRCEGKCRIKCGPDTKFE 67
          + VAILC +LLS A  TVSADAADCIDGCFTACVQKD+R MQRCE KC IKCGPD K E
Sbjct: 4  SAVAILCLLLLS-AVVTVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCGPDNKVE 61

[Close]

BLAST of Carg08174 vs. TrEMBL
Match: tr|A0A1S3C2J8|A0A1S3C2J8_CUCME (uncharacterized protein LOC103496144 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496144 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.8e-14
Identity = 38/43 (88.37%), Postives = 40/43 (93.02%), Query Frame = 0


Query: 24 TVSADAADCIDGCFTACVQKDTRLMQRCEGKCRIKCGPDTKFE 67
          TVSADAADCID CFTACVQKDTR+MQRCEGKCRIKCGPD K +
Sbjct: 24 TVSADAADCIDACFTACVQKDTRVMQRCEGKCRIKCGPDNKVD 66

[Close]

BLAST of Carg08174 vs. TrEMBL
Match: tr|A0A1S4E0W4|A0A1S4E0W4_CUCME (uncharacterized protein LOC103496144 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496144 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.5e-11
Identity = 37/52 (71.15%), Postives = 39/52 (75.00%), Query Frame = 0


Query: 24 TVSADAADCIDGCFTACVQKD---------TRLMQRCEGKCRIKCGPDTKFE 67
          TVSADAADCID CFTACVQKD          R+MQRCEGKCRIKCGPD K +
Sbjct: 24 TVSADAADCIDACFTACVQKDNGWVGCCGAARVMQRCEGKCRIKCGPDNKVD 75

[Close]

BLAST of Carg08174 vs. TrEMBL
Match: tr|A0A0L9VG55|A0A0L9VG55_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan09g268400 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.3e-09
Identity = 35/61 (57.38%), Postives = 45/61 (73.77%), Query Frame = 0


Query: 1  MKKSTAATTVAILCFILLSAAATTVSADAADCIDGCFTACVQKDTRLMQRCEGKCRIKCG 60
          MKK  AAT    + F+L+++   +V  DAADC+DGC TACVQ+D+RL QRCE KC I+CG
Sbjct: 1  MKKMMAAT----MLFLLIASQMESVVPDAADCLDGCSTACVQRDSRLTQRCERKCSIRCG 57

Query: 61 P 62
          P
Sbjct: 61 P 57

[Close]

BLAST of Carg08174 vs. TrEMBL
Match: tr|A0A0S3S1Z0|A0A0S3S1Z0_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.05G013000 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.3e-09
Identity = 35/61 (57.38%), Postives = 45/61 (73.77%), Query Frame = 0


Query: 1  MKKSTAATTVAILCFILLSAAATTVSADAADCIDGCFTACVQKDTRLMQRCEGKCRIKCG 60
          MKK  AAT    + F+L+++   +V  DAADC+DGC TACVQ+D+RL QRCE KC I+CG
Sbjct: 1  MKKMMAAT----MLFLLIASQMESVVPDAADCLDGCSTACVQRDSRLTQRCERKCSIRCG 57

Query: 61 P 62
          P
Sbjct: 61 P 57

The following BLAST results are available for this feature:

BLAST of Carg08174 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57551.1	1.5e-15	77.97	hypothetical protein Csa_3G209970 [Cucumis sativus]	[more]
XP_008456107.1	2.8e-14	88.37	PREDICTED: uncharacterized protein LOC103496144 isoform X2 [Cucumis melo]	[more]
XP_016901882.1	2.2e-11	71.15	PREDICTED: uncharacterized protein LOC103496144 isoform X1 [Cucumis melo]	[more]
KOM54025.1	3.5e-09	57.38	hypothetical protein LR48_Vigan09g268400 [Vigna angularis] >BAT86815.1 hypotheti...	[more]
XP_010103864.1	7.8e-09	52.63	uncharacterized protein LOC21406914 [Morus notabilis] >EXB97305.1 hypothetical p...	[more]

BLAST of Carg08174 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G25275.3	1.0e-07	42.86	unknown protein	[more]

BLAST of Carg08174 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg08174 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LC00\|A0A0A0LC00_CUCSA	9.7e-16	77.97	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G209970 PE=4 SV=1	[more]
tr\|A0A1S3C2J8\|A0A1S3C2J8_CUCME	1.8e-14	88.37	uncharacterized protein LOC103496144 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S4E0W4\|A0A1S4E0W4_CUCME	1.5e-11	71.15	uncharacterized protein LOC103496144 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0L9VG55\|A0A0L9VG55_PHAAN	2.3e-09	57.38	Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan09g268400 PE...	[more]
tr\|A0A0S3S1Z0\|A0A0S3S1Z0_PHAAN	2.3e-09	57.38	Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.05G...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08174-RA	Carg08174-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37183	FAMILY NOT NAMED	coord: 1..68

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg08174	MELO3C019497	Melon (DHL92) v3.5.1	carmeB0380
Carg08174	ClCG05G009870	Watermelon (Charleston Gray)	carwcgB0370
Carg08174	CSPI03G18670	Wild cucumber (PI 183967)	carcpiB0405
Carg08174	Cucsa.244190	Cucumber (Gy14) v1	carcgyB0436
Carg08174	CmaCh04G005050	Cucurbita maxima (Rimu)	carcmaB0529
Carg08174	CmoCh04G005430	Cucurbita moschata (Rifu)	carcmoB0514
Carg08174	Lsi05G002000	Bottle gourd (USVL1VR-Ls)	carlsiB346
Carg08174	Cp4.1LG01g02060	Cucurbita pepo (Zucchini)	carcpeB0527
Carg08174	CsGy3G018510	Cucumber (Gy14) v2	carcgybB0380
Carg08174	MELO3C019497.2	Melon (DHL92) v3.6.1	carmedB0384
Carg08174	CsaV3_3G018720	Cucumber (Chinese Long) v3	carcucB0403
Carg08174	Cla97C05G092270	Watermelon (97103) v2	carwmbB0396
Carg08174	Bhi01G001243	Wax gourd	carwgoB0459

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg08174	Silver-seed gourd	carcarB403
Carg08174	Cucurbita maxima (Rimu)	carcmaB0526
Carg08174	Cucurbita moschata (Rifu)	carcmoB0509
Carg08174	Cucurbita pepo (Zucchini)	carcpeB0523
Carg08174	Cucumber (Chinese Long) v2	carcuB0400
Carg08174	Melon (DHL92) v3.5.1	carmeB0379
Carg08174	Watermelon (Charleston Gray)	carwcgB0369
Carg08174	Watermelon (97103) v1	carwmB0370
Carg08174	Watermelon (97103) v1	carwmB0371
Carg08174	Watermelon (97103) v2	carwmbB0395
Carg08174	Wax gourd	carwgoB0458