CsGy3G018510 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G018510
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	thionin-like protein
Location	Chr3 : 14665973 .. 14669093 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCGGCGATGGAGAGATCAGCGGTGGCGATTTTGTGTTTATTGTTACTTTCTGCGGTGGTGACGGTTTCAGCGGACGCCGCCGACTGCATTGACGGCTGTTTCACTGCTTGTGTCCAGAAAGACTGTGAGTTTAAACACTTCCTCTTTCGCTTGTAACCTTTTCTTTTTTTTTTTTGTTTAGCCCTATTATTTGTGACTGGATCGGCATTTTAGGGCATCCAGGATTCCGTTTCCTTAATTGCAGCAATTGGTTATTGATTTGAAATTAAATGATTAGATTTCAAAATTAATCTAACAAACTAATTTGAGAATAGTGTTTTTGACTTAAAAATTGATATTGATTTGAAATTGGATTTAATGGAAAAAAGAATGAGATTAAGAAAAAGTTGGTTGGGTTGGGTGTGGTGTGGTGCAGCTAGGGCGATGCAGCGTTGTGAGAGGAAGTGTACAATCAAGTGCGGTCCAGGTATTTCTTTTAACCATCATCTTATTTACATTTTGTTTTTCTTCTTTTTAATTTAAATAATTATGTGATATGAAATTAGATACTTAGACCTCTTTTCTGGCAATCCTATAATACATTAATGCCACCTCCCACTTCCATTTTCATTCTTTTCTTTTCATCCATTTCATATTCTTTCTTATCTAATTATGATCATTATTATTCTCTTAATTCTCAAATAAATAAGCTTATCTTTTTCTTTTTATTTTACAATTTTATCTCATCATCTTTTTAACAAATCTCACCTTATGATATTTCTATTGTTCCGTTTTCATAATGAACCATTTCTTTTCTTTTCATTCATTAACCAGTTAATTGTTTTTAAATTTGATCTTCATAACCTAAAATTTATAGAACCCAAATCAATAATAGTTGAGCAAAGGAAAAGTTTTCACACACACTCAAAAAAACAACCAAAATTGTTATTACATATAAGAGAGATAGGTGTAGTAAAGAATATAATATAATGTTTACCTATATAGGGTACAGTATAAGTGTACAATTTACATGTAGCTTCCAAGACATCAAATTTTCCTACAATATAATTAAGTTGTGGTATTAAGTAACAATTAGTAACAATGCAGGCATGTATCACAACAAATATTAAGAATATATATATCAAAGGAAACTCTAAACTAAAAAAAGTTAAACAACTACAAATGAAGATTATTCCAAAGGTTATGATCTTTGTTAGAATTAGTCCAAATCTAGTTTGGATCTAAGAGTTCACAAATGCTAGGGACAACATGTAAACACTCAAATTTAATTCAAAAAGAATTTAGATCAACGTTATATTACCGTCTAAATCTCGACCAAAAGAACATCCAAGGTGTTTAAATCCTTTTAATATGTGAAATTTTGTTAGGTAATTGATGTAATTTTAGAAATTAATATGAAATTTATTCACTAAAGGAGAAAAAAGATCATAATAATCTCTCTTGCCACGTAATTAATTCAATCAAAGATCACAACTACAAGCAATAAAATGCAACTCTAAACTACATATATATAATTGAAGCTAACTACAAAATTTAACAATTACATTACTATTCAATGAAAGCAAGAATCCTTCACTTTACTAACATTGATGAGTTGCTTGAACTTTGTAATTTCTCATTTGCTCAATTCGTACCAAGTTCGATCAAAATCTAAAGAAAGGAGATAAACACTTCAGTTCAACAAAAGAATTTAAGAATTAAAGTATATAAAAAAAAAGCTTTTATAACATTCAAATTCAGATTAAGAATAAAAAACCTAAACATCTCACGATGGTTTCTCAAAGCAAAAGGCCACAAAAAACCTTTACAATGATTAAGCCCTTCATCGTTAAGTCCTTTTGCTCAAAAAACCATATTTGAATTTAAGCTTTTTGTATAAATTTCAAATATGAACACGAAAGCAAGTAGCATCTGAGGAAAAACTATAAACACACAAACCTAAAATGGAAATAAACAAAATTATCGTGAAAAAGGAAATTACAATTAGAATAAATTTGAAAATCAAGTCATGAAAGTGCACAAAAGAGAAGAAATAATGTACAAATGAAATAGGTAAAGGAAAACAATGGAGGGAGTGGCGGTGGTGGGTGAAGTAGTGTTGAGAGAGGAAGAGGCGGAGCAACCCAAGGTGGGAAGGGGGCTGTGCGAGCAAACGCGTTGGCGTTGTGAGGAAGATGGAGAGTGAAAAATTAGAGTTTAAATAGTAGGAAGGAAATGAGATCTGAAAGTTCTATATAAAATAGGAAAACTCTAAACAAAGGCGTTGGGAGTTTCTCTACAAAAACATTCTTTCTCAATTTACTCCCGACGTACAACGTTCCGGGTTATGGCTAACTTCCAATGCTTGCCATAGCTTGTAAGGAGATATCATTTTTTCTGACTTATTATCTCTTGATGATTGTCTTGTGTGTCGAAAAATTAACTTTTTCTTGTAGTGAGAAGAGTTACCGATGTTGTTGAACTTAGTTATTTATGTTTTTCGTAACCACATTCTAGATTTTAAAATTATATATATTACTTAAATTTTTTTTTTCTAAACCAAGTTAAGTTAAGACCCTTTTAGATTTTACATGTTTGGTAGGACACACCTTTTATCATTATGATTATGATTATTATTAATTATTTTGTTTAACATGTGATAGAAAAATTTGGGAAAATCTGTCTAAAGCCTTTTTAGATTGTATGTGTGTTAGATAGATATAGGTTATCTAGAAATATTTTTAAATTTATTTTTTTAAAGAATTAAAAAGAAAAATTGGAAGAAAACATGTGTTTTTTTTAATGATTTTAATGTGAAATTACATAGAATAATCATATCATCAATCAGTAAGAGGCGTAAATGGGGAGAAACATTCTTTTCCCCTTAGCCTCCTTTAGATAGTATATATTATTGTTATATATAGTTAAATCTATCATATAGTGTATAAAATGTCACTTTTTTTTGTTTTTGTTTGTAAAATTCTGCAACATATTACACAATGTAATTGCAGATAACAAAGTTGAGGAAAATACTGCACGATGAGACAGAAGAACAAAGGGTAAGGGAGTGAATGTTGTGAGAAATCTTACCTTCTTGTGTTGTAATAAAGATAGTTGAGGGAAGATACTTTATGTATGTTA

mRNA sequence

GGCGGCGATGGAGAGATCAGCGGTGGCGATTTTGTGTTTATTGTTACTTTCTGCGGTGGTGACGGTTTCAGCGGACGCCGCCGACTGCATTGACGGCTGTTTCACTGCTTGTGTCCAGAAAGACTCTAGGGCGATGCAGCGTTGTGAGAGGAAGTGTACAATCAAGTGCGGTCCAGATAACAAAGTTGAGGAAAATACTGCACGATGAGACAGAAGAACAAAGGGTAAGGGAGTGAATGTTGTGAGAAATCTTACCTTCTTGTGTTGTAATAAAGATAGTTGAGGGAAGATACTTTATGTATGTTA

Coding sequence (CDS)

ATGGAGAGATCAGCGGTGGCGATTTTGTGTTTATTGTTACTTTCTGCGGTGGTGACGGTTTCAGCGGACGCCGCCGACTGCATTGACGGCTGTTTCACTGCTTGTGTCCAGAAAGACTCTAGGGCGATGCAGCGTTGTGAGAGGAAGTGTACAATCAAGTGCGGTCCAGATAACAAAGTTGAGGAAAATACTGCACGATGA

Protein sequence

MERSAVAILCLLLLSAVVTVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCGPDNKVEENTAR

Homology

[Close]

BLAST of CsGy3G018510 vs. NCBI nr
Match: KGN57551.1 (hypothetical protein Csa_3G209970 [Cucumis sativus])

HSP 1 Score: 129.8 bits (325), Expect = 3.4e-27
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MERSAVAILCLLLLSAVVTVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCGPDNKV 60
          MERSAVAILCLLLLSAVVTVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCGPDNKV
Sbjct: 1  MERSAVAILCLLLLSAVVTVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCGPDNKV 60

Query: 61 EENTAR 67
          EENTAR
Sbjct: 61 EENTAR 66

[Close]

BLAST of CsGy3G018510 vs. NCBI nr
Match: XP_008456107.1 (PREDICTED: uncharacterized protein LOC103496144 isoform X2 [Cucumis melo])

HSP 1 Score: 87.4 bits (215), Expect = 1.9e-14
Identity = 40/47 (85.11%), Postives = 42/47 (89.36%), Query Frame = 0


Query: 19 TVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCGPDNKVEENTA 66
          TVSADAADCID CFTACVQKD+R MQRCE KC IKCGPDNKV+EN A
Sbjct: 24 TVSADAADCIDACFTACVQKDTRVMQRCEGKCRIKCGPDNKVDENIA 70

[Close]

BLAST of CsGy3G018510 vs. NCBI nr
Match: XP_016901882.1 (PREDICTED: uncharacterized protein LOC103496144 isoform X1 [Cucumis melo])

HSP 1 Score: 79.7 bits (195), Expect = 4.1e-12
Identity = 40/56 (71.43%), Postives = 42/56 (75.00%), Query Frame = 0


Query: 19 TVSADAADCIDGCFTACVQKD---------SRAMQRCERKCTIKCGPDNKVEENTA 66
          TVSADAADCID CFTACVQKD         +R MQRCE KC IKCGPDNKV+EN A
Sbjct: 24 TVSADAADCIDACFTACVQKDNGWVGCCGAARVMQRCEGKCRIKCGPDNKVDENIA 79

[Close]

BLAST of CsGy3G018510 vs. NCBI nr
Match: KOM54025.1 (hypothetical protein LR48_Vigan09g268400 [Vigna angularis] >BAT86815.1 hypothetical protein VIGAN_05013000 [Vigna angularis var. angularis])

HSP 1 Score: 70.5 bits (171), Expect = 2.5e-09
Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = 0


Query: 5  AVAILCLLLLSAVVTVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCGPDN 59
          A  +L LL+ S + +V  DAADC+DGC TACVQ+DSR  QRCERKC+I+CGP N
Sbjct: 6  AATMLFLLIASQMESVVPDAADCLDGCSTACVQRDSRLTQRCERKCSIRCGPGN 59

[Close]

BLAST of CsGy3G018510 vs. NCBI nr
Match: NP_001351343.1 (uncharacterized protein LOC100305956 precursor [Glycine max])

HSP 1 Score: 69.3 bits (168), Expect = 5.5e-09
Identity = 31/59 (52.54%), Postives = 46/59 (77.97%), Query Frame = 0


Query: 5  AVAILCLLLLSAVVTVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCGPDNKVEEN 64
          A+ ++ LL+ + + +V  DAADC+DGC TACVQ DSR   RC+RKC+I+CGPD+ ++E+
Sbjct: 7  AMMLIFLLISTQMESVEPDAADCLDGCTTACVQSDSRLQARCDRKCSIRCGPDSTIKED 65

[Close]

BLAST of CsGy3G018510 vs. TAIR10
Match: AT1G25275.3 (unknown protein)

HSP 1 Score: 54.3 bits (129), Expect = 3.3e-08
Identity = 27/59 (45.76%), Postives = 38/59 (64.41%), Query Frame = 0


Query: 7  AILCLLLLSAVVTVSADA----ADCIDGCFTACVQKDSRAMQRCERKCTIKCGPDNKVE 62
          A+L ++ L + + + A+A     DC DGC TACVQ+D R   RC+RKC+I+CGP    E
Sbjct: 11 ALLIMMALCSSLNMVAEAQLGPGDCYDGCSTACVQRDPRKTSRCDRKCSIRCGPGKHYE 69

[Close]

BLAST of CsGy3G018510 vs. TrEMBL
Match: tr|A0A0A0LC00|A0A0A0LC00_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G209970 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 2.3e-27
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MERSAVAILCLLLLSAVVTVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCGPDNKV 60
          MERSAVAILCLLLLSAVVTVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCGPDNKV
Sbjct: 1  MERSAVAILCLLLLSAVVTVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCGPDNKV 60

Query: 61 EENTAR 67
          EENTAR
Sbjct: 61 EENTAR 66

[Close]

BLAST of CsGy3G018510 vs. TrEMBL
Match: tr|A0A1S3C2J8|A0A1S3C2J8_CUCME (uncharacterized protein LOC103496144 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496144 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.3e-14
Identity = 40/47 (85.11%), Postives = 42/47 (89.36%), Query Frame = 0


Query: 19 TVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCGPDNKVEENTA 66
          TVSADAADCID CFTACVQKD+R MQRCE KC IKCGPDNKV+EN A
Sbjct: 24 TVSADAADCIDACFTACVQKDTRVMQRCEGKCRIKCGPDNKVDENIA 70

[Close]

BLAST of CsGy3G018510 vs. TrEMBL
Match: tr|A0A1S4E0W4|A0A1S4E0W4_CUCME (uncharacterized protein LOC103496144 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496144 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.7e-12
Identity = 40/56 (71.43%), Postives = 42/56 (75.00%), Query Frame = 0


Query: 19 TVSADAADCIDGCFTACVQKD---------SRAMQRCERKCTIKCGPDNKVEENTA 66
          TVSADAADCID CFTACVQKD         +R MQRCE KC IKCGPDNKV+EN A
Sbjct: 24 TVSADAADCIDACFTACVQKDNGWVGCCGAARVMQRCEGKCRIKCGPDNKVDENIA 79

[Close]

BLAST of CsGy3G018510 vs. TrEMBL
Match: tr|A0A0L9VG55|A0A0L9VG55_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan09g268400 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.6e-09
Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = 0


Query: 5  AVAILCLLLLSAVVTVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCGPDN 59
          A  +L LL+ S + +V  DAADC+DGC TACVQ+DSR  QRCERKC+I+CGP N
Sbjct: 6  AATMLFLLIASQMESVVPDAADCLDGCSTACVQRDSRLTQRCERKCSIRCGPGN 59

[Close]

BLAST of CsGy3G018510 vs. TrEMBL
Match: tr|A0A0S3S1Z0|A0A0S3S1Z0_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.05G013000 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.6e-09
Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = 0


Query: 5  AVAILCLLLLSAVVTVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCGPDN 59
          A  +L LL+ S + +V  DAADC+DGC TACVQ+DSR  QRCERKC+I+CGP N
Sbjct: 6  AATMLFLLIASQMESVVPDAADCLDGCSTACVQRDSRLTQRCERKCSIRCGPGN 59

The following BLAST results are available for this feature:

BLAST of CsGy3G018510 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57551.1	3.4e-27	100.00	hypothetical protein Csa_3G209970 [Cucumis sativus]	[more]
XP_008456107.1	1.9e-14	85.11	PREDICTED: uncharacterized protein LOC103496144 isoform X2 [Cucumis melo]	[more]
XP_016901882.1	4.1e-12	71.43	PREDICTED: uncharacterized protein LOC103496144 isoform X1 [Cucumis melo]	[more]
KOM54025.1	2.5e-09	62.96	hypothetical protein LR48_Vigan09g268400 [Vigna angularis] >BAT86815.1 hypotheti...	[more]
NP_001351343.1	5.5e-09	52.54	uncharacterized protein LOC100305956 precursor [Glycine max]	[more]

BLAST of CsGy3G018510 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G25275.3	3.3e-08	45.76	unknown protein	[more]

BLAST of CsGy3G018510 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy3G018510 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LC00\|A0A0A0LC00_CUCSA	2.3e-27	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G209970 PE=4 SV=1	[more]
tr\|A0A1S3C2J8\|A0A1S3C2J8_CUCME	1.3e-14	85.11	uncharacterized protein LOC103496144 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S4E0W4\|A0A1S4E0W4_CUCME	2.7e-12	71.43	uncharacterized protein LOC103496144 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0L9VG55\|A0A0L9VG55_PHAAN	1.6e-09	62.96	Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan09g268400 PE...	[more]
tr\|A0A0S3S1Z0\|A0A0S3S1Z0_PHAAN	1.6e-09	62.96	Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.05G...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0080167	response to karrikin
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G018510.1	CsGy3G018510.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37183	FAMILY NOT NAMED	coord: 5..64

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy3G018510	MELO3C019497	Melon (DHL92) v3.5.1	cgybmeB210
CsGy3G018510	ClCG05G009870	Watermelon (Charleston Gray)	cgybwcgB214
CsGy3G018510	CSPI03G18670	Wild cucumber (PI 183967)	cgybcpiB110
CsGy3G018510	CmaCh04G005050	Cucurbita maxima (Rimu)	cgybcmaB410
CsGy3G018510	CmoCh04G005430	Cucurbita moschata (Rifu)	cgybcmoB386
CsGy3G018510	Lsi05G002000	Bottle gourd (USVL1VR-Ls)	cgyblsiB198
CsGy3G018510	CsaV3_3G018720	Cucumber (Chinese Long) v3	cgybcucB117
CsGy3G018510	Cla97C05G092270	Watermelon (97103) v2	cgybwmbB206
CsGy3G018510	Bhi01G001243	Wax gourd	cgybwgoB271
CsGy3G018510	Carg08174	Silver-seed gourd	carcgybB0380

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy3G018510	Silver-seed gourd	carcgybB0650
CsGy3G018510	Cucurbita maxima (Rimu)	cgybcmaB332
CsGy3G018510	Cucurbita moschata (Rifu)	cgybcmoB301
CsGy3G018510	Cucurbita pepo (Zucchini)	cgybcpeB317
CsGy3G018510	Cucurbita pepo (Zucchini)	cgybcpeB362
CsGy3G018510	Cucumber (Chinese Long) v2	cgybcuB109
CsGy3G018510	Melon (DHL92) v3.6.1	cgybmedB215
CsGy3G018510	Watermelon (97103) v1	cgybwmB229