CmoCh04G005430 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G005430
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Thionin-like protein
Location	Cmo_Chr04 : 2691552 .. 2694458 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CACTAGTTTTTTCCCCCAAATTAAATTTTATTTATTAATTTTTTTGCCACGTGGCCATTATTTAGCTTGGGACTCCGATAACTTCATTGATAACCATCATTTCTAGTATCGTATGCTCAGAAACAAACGAACCGAAAGATAAGATCTGAAACGGGAGCGGCGATGAAGAAATCTACGGCGGCGACGACGGTGGCGATTCTGTGCTTCATCCTACTCTCTGCGGCAGCGACGACGGTTTCAGCCGACGCCGCAGACTGCATCGACGGCTGCTTCACCGCCTGTGTCCAGAAAGACAGTGAGTATTTTTGATCTTCCGATTTCCTCTCTAAACTTCATCCTTCTTCCAATTGAAACCCTAATTTGTTTCTCTTAGCGATTCTGAAAATCTCTGCGTTTTTCATTTGCATGTAATTTCAGAAATTGGTTTTCGAATCTGTTAAAATTAGGGCTAAATTAACCTAAAAAAAACCCCTAAATTTTATACTTATTTTTATTTATTTAGATTATTAATTAAATAATTATATGACCTAAAAATAAGTAACAAAAAGTATTGTAAAATAAATAAATAAATATAATAAGTAACAAAAAGTTGGCTATGGTGCAGCGAGACTGATGCAGCGTTGTGAGGGCAAGTGCAGGATTAAATGCGGTCCAGGTATTCAAATTAATTTTTATAATTTAATTTAATTTTTAAATTTCCGAACTTTATCTTAATTTAATTTAATTTAATTAAGTTCACCTAATTAAAATACATATATTAGTTTTAAGTAAGAAAAGATTTTTATTTGTTTAAATTAAGAGAAGATTTCATTTATATAACTTTATTAAATGAGATGAAATATGTTTGCAGATACTAAATTTAAAGGCGAAGATATTATGGCTTAAAAGCAACTGAGGAGAGAAATAAATAAGGAAATATAATTATAAATTAACGTTTCTCGTGTCTTAATAATCATTGTCGTGTTTGTAAACTCTAAATTCTCGTCAGGATTGTGTAATGTTTTGTGTTTCTAATTAATATGTTTTTAAGTCTGGTTTGATAACTATCTATTTATTTTTTTAGCGTTCGTATTTTTTTAAAAAAATATATTATTTATTAAATAAAAAATAATATAAAGTAAGCTTTATGTATATATTTTAAAGTTGAATAAATGATTACGAGTCAAATGATTAAATGATTAATATTTAAAATGATAATTAAAATATTATTGGGTATGGATAGTTATATTTTAAAGTATTATTTATATAATATTTTCAAAATTATATTATTTGATTTAAGAAAATTGTTGTGAAATTGAATTAGGTTGAGATAAAGACGTAAAGCAAATAAAATGTGTAAGAAAATGTTATATAATATTTATTTATAATGTATCATTAAATATAATAAATAATAATAATAATAATAATAAATATTTGAGGTTCTCGGAAGTTGCCTGATTTTCCACGGACCAATCGTTGCGTTAGCGTGGCAGCTCCTTTATTATGGTCAAAGTCAAACTCAAACCTAACGGATCAATCATATCAACCCGACCCGACTCTCGAATAACCCGACCCGGTTTATTGGCTGACTTTTCGAATTTAAATTTTTTTAAATATATAAATTAAGAAATGAAATGGTAATTAATGTTTTTTTTTTCAATGGAAATTATGGTTGAATTTTGTGGATTTATCTCCTTTTTTTAACCATAAAAAAAGAAATTCAAAAGGCATTGGGTCACTTTAACAACGCTCTTTTGTAATTTTTTAATTCTATTTTGACGGTTTTGACTTAGAAAAAGGGTAACCACGATGCATTACTATACAAAAGATCGAATGTCTCGAGCTTGATGTAGGTAAAACAATGGAAATGGTATACCTTAGATAAACTCTAGTCTCGAACAACATCCATACAAAAGTCATAGATAAATTCAAGATCCAAGAGTCTCGATCTGAATATTGACTTAGACGTAAGTTTTTCATTCACGTGGTTTAAAGATAAGGTCTCGTGTTTCACTTGATTTTAATTCTAATTATCGTGTTATAATTTTTGAAAAAAAAACATGGATTAAATTTTAAGAAATGAAATTATTAAAAATCAATTAATTATTTATAAATATATATAAATAAATAAATAAAGGGAAAAGGAATAAAATCACATGGGAGAGGGAGGAAGGAAGGAAGCAAGTAATGGAAAGTACAATTGACTTAAGTGAGAGGGACACACAATAGGAACGACCGCAGAGGATCAAACCCTACAATGAACAATTTATTTTCCTCGTCATCAGACAATATAACGAAAAAGTCAAAGGCCCAAATGGTGATGAATCGTTAGTGGGAATTATATTAATTGAAAAAAAATGAGAGAGTTCAAATTCAATTTCCAATAATCACCCAAAACAAAAAGAACAGATTTTTTTGTGAATTTTCCATTGGATATTACTTGAAAAGGGGTGGAAAATGGAATCCAGTGTATCTATTTTGCCCTGGTCCTTGATTGTGAGCTAAATTCAATGACCCTTTGGGGTCCGCTCAAGAGAGAGAAAGATGAGAGAGAAACAGGACTTTTTATTGCTCCAGACGACGACGACGACTCATAAAGAAGGGTCTCATGTAAATGTTCAAATCCAAAGCCTTAATTTCATCTTACCTTCTTTGTGTTTCCATTTCTGGGTTTTGCTTCGATTCAGGTTTGTTCTTCAAAACCCACCTCTGTTCTTCTTTTACTTTCCAAACATTTTCCCAGATTCTCAAACCCTTTCAATTTCCTCCCAAAATGTTGGGGTTCGACTTTTTTAATGATGCCTTGTGCCTGTTTCTTTTAAGGGTTTTCTCTGTTCTAAATGGTTCTTGAAATTTCTCTGTTCCTTGTTCTTTGTTTTACTCGCAGATCTTTCATTGTTTGTTCTTAGTTCAAAGTGTTTGATCTGA

mRNA sequence

CACTAGTTTTTTCCCCCAAATTAAATTTTATTTATTAATTTTTTTGCCACGTGGCCATTATTTAGCTTGGGACTCCGATAACTTCATTGATAACCATCATTTCTAGTATCGTATGCTCAGAAACAAACGAACCGAAAGATAAGATCTGAAACGGGAGCGGCGATGAAGAAATCTACGGCGGCGACGACGGTGGCGATTCTGTGCTTCATCCTACTCTCTGCGGCAGCGACGACGGTTTCAGCCGACGCCGCAGACTGCATCGACGGCTGCTTCACCGCCTGTGTCCAGAAAGACACGAGACTGATGCAGCGTTGTGAGGGCAAGTGCAGGATTAAATGCGGTCCAGATCTTTCATTGTTTGTTCTTAGTTCAAAGTGTTTGATCTGA

Coding sequence (CDS)

ATGAAGAAATCTACGGCGGCGACGACGGTGGCGATTCTGTGCTTCATCCTACTCTCTGCGGCAGCGACGACGGTTTCAGCCGACGCCGCAGACTGCATCGACGGCTGCTTCACCGCCTGTGTCCAGAAAGACACGAGACTGATGCAGCGTTGTGAGGGCAAGTGCAGGATTAAATGCGGTCCAGATCTTTCATTGTTTGTTCTTAGTTCAAAGTGTTTGATCTGA

Homology

[Close]

BLAST of CmoCh04G005430 vs. TrEMBL
Match: A0A0A0LC00_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G209970 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 7.8e-15
Identity = 44/55 (80.00%), Postives = 47/55 (85.45%), Query Frame = 1


Query: 8  TTVAILCFILLSAAATTVSADAADCIDGCFTACVQKDTRLMQRCEGKCRIKCGPD 63
          + VAILC +LLSA  T VSADAADCIDGCFTACVQKD+R MQRCE KC IKCGPD
Sbjct: 4  SAVAILCLLLLSAVVT-VSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCGPD 57

[Close]

BLAST of CmoCh04G005430 vs. TrEMBL
Match: A0A151T7U7_CAJCA (Tubby-like F-box protein OS=Cajanus cajan GN=KK1_017695 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 5.8e-10
Identity = 35/61 (57.38%), Postives = 44/61 (72.13%), Query Frame = 1


Query: 1  MKKSTAATTVAILCFILLSAAATTVSADAADCIDGCFTACVQKDTRLMQRCEGKCRIKCG 60
          MKK  AA    I+  +++S+   +V  DA DCIDGC TACVQ+D+RL  RCEGKC+IKCG
Sbjct: 1  MKKMVAA----IMLLLVISSQMESVEPDATDCIDGCTTACVQRDSRLQARCEGKCKIKCG 57

Query: 61 P 62
          P
Sbjct: 61 P 57

[Close]

BLAST of CmoCh04G005430 vs. TrEMBL
Match: A0A0L9VG55_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan09g268400 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.7e-09
Identity = 35/61 (57.38%), Postives = 45/61 (73.77%), Query Frame = 1


Query: 1  MKKSTAATTVAILCFILLSAAATTVSADAADCIDGCFTACVQKDTRLMQRCEGKCRIKCG 60
          MKK  AAT    + F+L+++   +V  DAADC+DGC TACVQ+D+RL QRCE KC I+CG
Sbjct: 1  MKKMMAAT----MLFLLIASQMESVVPDAADCLDGCSTACVQRDSRLTQRCERKCSIRCG 57

Query: 61 P 62
          P
Sbjct: 61 P 57

[Close]

BLAST of CmoCh04G005430 vs. TrEMBL
Match: A0A0S3S1Z0_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.05G013000 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.7e-09
Identity = 35/61 (57.38%), Postives = 45/61 (73.77%), Query Frame = 1


Query: 1  MKKSTAATTVAILCFILLSAAATTVSADAADCIDGCFTACVQKDTRLMQRCEGKCRIKCG 60
          MKK  AAT    + F+L+++   +V  DAADC+DGC TACVQ+D+RL QRCE KC I+CG
Sbjct: 1  MKKMMAAT----MLFLLIASQMESVVPDAADCLDGCSTACVQRDSRLTQRCERKCSIRCG 57

Query: 61 P 62
          P
Sbjct: 61 P 57

[Close]

BLAST of CmoCh04G005430 vs. TrEMBL
Match: C6SY67_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.9e-09
Identity = 35/65 (53.85%), Postives = 44/65 (67.69%), Query Frame = 1


Query: 1  MKKSTAATTVAILCFILLSAAATTVSADAADCIDGCFTACVQKDTRLMQRCEGKCRIKCG 60
          MKK  AA    ++ F+L+S    +V  DAADC DGC TACVQ D+RL  RCE KC I+CG
Sbjct: 1  MKKMVAA----MMLFLLISTQMKSVEPDAADCSDGCSTACVQSDSRLQARCERKCSIRCG 60

Query: 61 PDLSL 66
          PD ++
Sbjct: 61 PDSTI 61

[Close]

BLAST of CmoCh04G005430 vs. TAIR10
Match: AT1G25275.3 (AT1G25275.3 unknown protein)

HSP 1 Score: 50.4 bits (119), Expect = 5.4e-07
Identity = 29/65 (44.62%), Postives = 38/65 (58.46%), Query Frame = 1


Query: 1  MKKSTAATTVAILCFILLSAAATTVSADA----ADCIDGCFTACVQKDTRLMQRCEGKCR 60
          MKK    T VA L  ++   ++  + A+A     DC DGC TACVQ+D R   RC+ KC 
Sbjct: 2  MKKQV--TIVAALLIMMALCSSLNMVAEAQLGPGDCYDGCSTACVQRDPRKTSRCDRKCS 61

Query: 61 IKCGP 62
          I+CGP
Sbjct: 62 IRCGP 64

[Close]

BLAST of CmoCh04G005430 vs. NCBI nr
Match: gi|659112190|ref|XP_008456107.1| (PREDICTED: uncharacterized protein LOC103496144 [Cucumis melo])

HSP 1 Score: 95.5 bits (236), Expect = 4.1e-17
Identity = 51/63 (80.95%), Postives = 54/63 (85.71%), Query Frame = 1


Query: 1  MKKSTAATTVAILCFILLSA-AATTVSADAADCIDGCFTACVQKDTRLMQRCEGKCRIKC 60
          M+KS AA   AILC +LLSA A  TVSADAADCID CFTACVQKDTR+MQRCEGKCRIKC
Sbjct: 1  MEKSAAAAA-AILCLLLLSAEAVVTVSADAADCIDACFTACVQKDTRVMQRCEGKCRIKC 60

Query: 61 GPD 63
          GPD
Sbjct: 61 GPD 62

[Close]

BLAST of CmoCh04G005430 vs. NCBI nr
Match: gi|700202418|gb|KGN57551.1| (hypothetical protein Csa_3G209970 [Cucumis sativus])

HSP 1 Score: 87.4 bits (215), Expect = 1.1e-14
Identity = 44/55 (80.00%), Postives = 47/55 (85.45%), Query Frame = 1


Query: 8  TTVAILCFILLSAAATTVSADAADCIDGCFTACVQKDTRLMQRCEGKCRIKCGPD 63
          + VAILC +LLSA  T VSADAADCIDGCFTACVQKD+R MQRCE KC IKCGPD
Sbjct: 4  SAVAILCLLLLSAVVT-VSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCGPD 57

[Close]

BLAST of CmoCh04G005430 vs. NCBI nr
Match: gi|1012351941|gb|KYP63130.1| (Tubby-like F-box protein 8 [Cajanus cajan])

HSP 1 Score: 71.2 bits (173), Expect = 8.3e-10
Identity = 35/61 (57.38%), Postives = 44/61 (72.13%), Query Frame = 1


Query: 1  MKKSTAATTVAILCFILLSAAATTVSADAADCIDGCFTACVQKDTRLMQRCEGKCRIKCG 60
          MKK  AA    I+  +++S+   +V  DA DCIDGC TACVQ+D+RL  RCEGKC+IKCG
Sbjct: 1  MKKMVAA----IMLLLVISSQMESVEPDATDCIDGCTTACVQRDSRLQARCEGKCKIKCG 57

Query: 61 P 62
          P
Sbjct: 61 P 57

[Close]

BLAST of CmoCh04G005430 vs. NCBI nr
Match: gi|920712776|gb|KOM54025.1| (hypothetical protein LR48_Vigan09g268400 [Vigna angularis])

HSP 1 Score: 69.7 bits (169), Expect = 2.4e-09
Identity = 35/61 (57.38%), Postives = 45/61 (73.77%), Query Frame = 1


Query: 1  MKKSTAATTVAILCFILLSAAATTVSADAADCIDGCFTACVQKDTRLMQRCEGKCRIKCG 60
          MKK  AAT    + F+L+++   +V  DAADC+DGC TACVQ+D+RL QRCE KC I+CG
Sbjct: 1  MKKMMAAT----MLFLLIASQMESVVPDAADCLDGCSTACVQRDSRLTQRCERKCSIRCG 57

Query: 61 P 62
          P
Sbjct: 61 P 57

[Close]

BLAST of CmoCh04G005430 vs. NCBI nr
Match: gi|255627691|gb|ACU14190.1| (unknown [Glycine max])

HSP 1 Score: 68.9 bits (167), Expect = 4.1e-09
Identity = 35/65 (53.85%), Postives = 44/65 (67.69%), Query Frame = 1


Query: 1  MKKSTAATTVAILCFILLSAAATTVSADAADCIDGCFTACVQKDTRLMQRCEGKCRIKCG 60
          MKK  AA    ++ F+L+S    +V  DAADC DGC TACVQ D+RL  RCE KC I+CG
Sbjct: 1  MKKMVAA----MMLFLLISTQMKSVEPDAADCSDGCSTACVQSDSRLQARCERKCSIRCG 60

Query: 61 PDLSL 66
          PD ++
Sbjct: 61 PDSTI 61

The following BLAST results are available for this feature:

BLAST of CmoCh04G005430 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G005430 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LC00_CUCSA	7.8e-15	80.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G209970 PE=4 SV=1	[more]
A0A151T7U7_CAJCA	5.8e-10	57.38	Tubby-like F-box protein OS=Cajanus cajan GN=KK1_017695 PE=3 SV=1	[more]
A0A0L9VG55_PHAAN	1.7e-09	57.38	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan09g268400 PE=4 SV=1	[more]
A0A0S3S1Z0_PHAAN	1.7e-09	57.38	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.05G013000 PE=...	[more]
C6SY67_SOYBN	2.9e-09	53.85	Putative uncharacterized protein OS=Glycine max PE=2 SV=1	[more]

BLAST of CmoCh04G005430 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G25275.3	5.4e-07	44.62	unknown protein	[more]

BLAST of CmoCh04G005430 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659112190\|ref\|XP_008456107.1\|	4.1e-17	80.95	PREDICTED: uncharacterized protein LOC103496144 [Cucumis melo]	[more]
gi\|700202418\|gb\|KGN57551.1\|	1.1e-14	80.00	hypothetical protein Csa_3G209970 [Cucumis sativus]	[more]
gi\|1012351941\|gb\|KYP63130.1\|	8.3e-10	57.38	Tubby-like F-box protein 8 [Cajanus cajan]	[more]
gi\|920712776\|gb\|KOM54025.1\|	2.4e-09	57.38	hypothetical protein LR48_Vigan09g268400 [Vigna angularis]	[more]
gi\|255627691\|gb\|ACU14190.1\|	4.1e-09	53.85	unknown [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0080167	response to karrikin
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G005430.1	CmoCh04G005430.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37183	FAMILY NOT NAMED	coord: 1..62 score: 3.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G005430	Cucsa.244190	Cucumber (Gy14) v1	cgycmoB0687
CmoCh04G005430	CmaCh04G005050	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G005430	MELO3C019497	Melon (DHL92) v3.5.1	cmomeB683
CmoCh04G005430	ClCG05G009870	Watermelon (Charleston Gray)	cmowcgB660
CmoCh04G005430	CSPI03G18670	Wild cucumber (PI 183967)	cmocpiB698
CmoCh04G005430	Lsi05G002000	Bottle gourd (USVL1VR-Ls)	cmolsiB683
CmoCh04G005430	CsaV3_3G018720	Cucumber (Chinese Long) v3	cmocucB0814
CmoCh04G005430	Cla97C05G092270	Watermelon (97103) v2	cmowmbB735
CmoCh04G005430	Bhi01G001243	Wax gourd	cmowgoB0849
CmoCh04G005430	CsGy3G018510	Cucumber (Gy14) v2	cgybcmoB386
CmoCh04G005430	Carg08174	Silver-seed gourd	carcmoB0514

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G005430	Silver-seed gourd	carcmoB0899
CmoCh04G005430	Cucurbita moschata (Rifu)	cmocmoB286
CmoCh04G005430	Cucurbita maxima (Rimu)	cmacmoB338
CmoCh04G005430	Cucumber (Chinese Long) v2	cmocuB687
CmoCh04G005430	Melon (DHL92) v3.5.1	cmomeB682
CmoCh04G005430	Watermelon (Charleston Gray)	cmowcgB658
CmoCh04G005430	Watermelon (97103) v1	cmowmB697
CmoCh04G005430	Watermelon (97103) v1	cmowmB699
CmoCh04G005430	Cucurbita pepo (Zucchini)	cmocpeB668
CmoCh04G005430	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G005430	Melon (DHL92) v3.6.1	cmomedB774