Cla97C05G092270 (gene) Watermelon (97103) v2

Overview
NameCla97C05G092270
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionTubby-like F-box protein
LocationCla97Chr05 : 10357107 .. 10360641 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAACCCGCGGCGGCGGCGATTTTGTGCTTCTTGCTACTTTCTGCGGCGGCGGTGGCGGTTTCAGCCGACGCTGCCGACTGCATTGACGGCTGTTTCACCGCTTGTGTCCAGAAAGACAGTGAGTTTTCTTTTTTTTAACATTTCCTTTCTCTAAATTTCTTCGTATCTCACTTCTCAAATTGAGCCCTAATTCCTTTTTCCCCCTAATTTAATCGGCGTTTTAGGCATCTACGATTCTGAAATACTTGCATGGAAAATTATTGGGGTTTTCTTTTTCCTTTTTTTATAGCAATTTCTGAAGTTCCAGCAACTCATTATTGGGACAGAAAATAATTTGTTGTTTTAAAATATTTTAGTTGGTTTAAATACTATATTGTAGCCAGGTTAGCATATTCTACTAAAAATTATCATACACTATATTCCATAAATCTTTACCCCTTTTTATTTTCCTAAAATTTCTTTAGCTTTCGGATTGTTTCCTAGAAAATTTGAAAACAAAGGATTCAATAAAAACATAGTTGCATTTTATGTTTTCGGGTGTATGATTGATGGTAGATGCATAAATTTATGATTGTAAGGTTGATGAAAAAAGGATTATCACACAATGTTATAGCAATTCGAAAACCAAATTGTAAAGCATTGATAAAAATACTAAAAGACAAAACACAAGTCTTTATAACTTAATTCATTGTAATACCCTAGGTTTGGGGCAATGTGCTCAAGAAAGATAATTTCGTTAATATAAAGTAAAATAATTACAATGTTGTATTTATTTGTAAATAAATGACAATTACAGTGATCGCGAAAAACCTAACTTGGTGAATGGTTACTTAGATTTTCCCTAAATGTGAGATTTTCTCTCATAGAAGTTCAGACTCCTTCTTGATGATACTCCTACCTTTTCACCTTCCAATGAAGAACACTTCACTCACAACACTTGAGCTCCTTTAGGTGTGAGAATCTTTCTCAATGATGCGGTAGACAATTCGATAAGATCTAGAGACACATTCAAGATGAATAGTAGCCAAAGCTTCACAATCGCAAAAATTGACACGTAATCTCCTTCTTGAACACCAACACCACAAATGACTCAATACACTTTCAAAAGCGAACAACCCTAAAAGGAGAACAATACTCTCTCAAATATACACGACGGAAAAGAAGAGTCGAACCCAAACCATAGTCACAGAGCCCAGAGAAGGAAAAGATCCGTAGGAACAATTACCTATAATTTTTAAGATAAGGAAAAAATATTCAGTCAGAAATAACAATCATAGAGACATCCCTAGAACAATCGAGGGACAAATAGACAAACATCTCATGAGATAACTGTCGCAACAACTTCAAAAAGTGTAGCTAATATCAAATCTTGAGGATCTCACATTTGAAAAATTAAGAGACCACATACTTTTTATAAAATAGATGAATCATCTATTTTTCTCATTACTAATTGATTTTAAGAGGGGTTGATGGATTTTGGTTAAAAAATAAATGAATCAAAGTCTTAAAAATGTATAGATTTGAAAATGACTTGAAAAAATTGGATATGGTGCAGCGAGGCTGATGCAGCGTTGTGAGGGCAAGTGTAGAATTAAGTGCGGTCCAGGTATTTATTTATTTCTTTATTTATTCGAATCAACTTTTATTATTTAATTCTTCTACATTTTCTCATTTCTTTAATTAAGCATATTTACATTTTTTTCATTTTCTATTCATTTTCCCTTAATTTAATTATTGATGTGATATCAAACTTTATACTTAGGTCTCTTTTATGATTTGAATATCAATTGAAATTTATGAGAATGATAGAATATTAATGGCAGCTGCTACTTCCATTTTTACTTTTTTTTTCTTTTTTCTTTTTTTAATGAATTCTTTGATTGAATCAAATATTTCAATTTTCATATTTTGATGTAGTACTTTTTATTTATTTATTTATTTTTTTTATGATACAAGGAAAAGAAATTACGATTAAAATAGAAAAACTATAGGGAAAAACTAATTTTATAATATCGATTAATTGAGAGGACAAATTTCTTTTTTTAGTACAAGAAGAGTGGAGAATTGAACTATGATTGGAAAAATAGATAAAAGAAGATACTCTTTAAATTTTTGTTTTTTTTCTTTCTTTTTTTAGAATTCGATTACTATGAATTTAAGAGAAAAACAGTTTAAATTTTAAAAATACAAAGTTAATATTAAAATTGTTATCAAGTACAATTAGCGGTAGGAGGATTCCTAACACAGATTTGTCATTAAGTTATAGTTGGTATATGCATAATTTAATTATGCTATCTTTGCAACTAAGCATAGTTCATAAAATAACATATATTTCTTAATTAATTGACATTTTTGTCCTAATAAATTGAATTTGTTATGATCTTGTTTTAGATTCATCTTCCAAACTATATTAATGCTTAAACATCTCTTGTGTCTAATAAATATATGACATTTAGAGTATAATGAATTGATTTAATGTTTAATAAATATATGACATATAAGAGTATAATGAATTGATTTAATGTTTAGTGAGATGATAAATTTTCAATTTTGTTTTCACCACATCCATGATTTTAAGAAAAATATTGAATATGTTAATGATTCAGACACAAAATTTAAATTTAAAGATCTATAAGAAAATTTTTAAAATTCAAAGGCTGAATAGGAAAAATATATATTTTGGGTGATCTGATTTTCATCTTTTATTATTATTATTTTTTTATCTTATTGTCACTATTGTTGTCTTAAATATAGAAGTTTTATCTTTTAATTTTGAGATTTTGATTTGATCATTTTTTGAATAAAAGAGGTTAAAAATTAAATTCGTAAAGGTCAAGTTCTGTTCATTAGTCTTCAGTGTTTCGTTTTATAAACATACTTTCATTGGTTGGTTTCTTTGCTTTTTTTTTAATTATCTTTTAGAGATTTTTAAAAAAATTTCTTGCCAAGTTTTCAAAAAAGTTTGGATAGTCTAAGAAAAGAGTAGATTTTGAAAATGTATTATTGTTTTTTGAATTTAGTTATGTTTCTTAAGACGAAAACAATTGTAAATAAATTGTGAGAAAATAATTAATGATTATTAACGAAGCCTAAAAAGAAAAGAAAAAAGAGGTTCTAAATGTCAGTCTCAATATTTGGAAAGTGTCAATAAAAGGCCACATATATTTTTTTTCAAAAATTATAAATATTAAAATATCATAAAAATGTTTAAATTGATGGATAATCATACCCTTGTTAAATAAGAATAAATGTCTTGTAATTAACAAGAGGTGTAATATTTTATTGAATTCAGTGTTATATTTAGTTGGTTTTTCTTTTCTTTTTACTATTAACACTTAGGGGTTGAAGAGAGTCTTTCTATAATGTGTTCGTCAATAATATATGCTTAAATCAGTTAAGCTATTTAACCAAATTGTATAAAAATAGTCGTAACTTTGTAATGACGTAGCTTGATTCATTAGAAAAATAATACGTTTGATGTAAAAATGTGATTGCAGATAACGAAGTTGATGAAAATCTTACTCGTTGA

mRNA sequence

ATGGAGAAACCCGCGGCGGCGGCGATTTTGTGCTTCTTGCTACTTTCTGCGGCGGCGGTGGCGGTTTCAGCCGACGCTGCCGACTGCATTGACGGCTGTTTCACCGCTTGTGTCCAGAAAGACACGAGGCTGATGCAGCGTTGTGAGGGCAAGTGTAGAATTAAGTGCGGTCCAGATAACGAAGTTGATGAAAATCTTACTCGTTGA

Coding sequence (CDS)

ATGGAGAAACCCGCGGCGGCGGCGATTTTGTGCTTCTTGCTACTTTCTGCGGCGGCGGTGGCGGTTTCAGCCGACGCTGCCGACTGCATTGACGGCTGTTTCACCGCTTGTGTCCAGAAAGACACGAGGCTGATGCAGCGTTGTGAGGGCAAGTGTAGAATTAAGTGCGGTCCAGATAACGAAGTTGATGAAAATCTTACTCGTTGA

Protein sequence

MEKPAAAAILCFLLLSAAAVAVSADAADCIDGCFTACVQKDTRLMQRCEGKCRIKCGPDNEVDENLTR
Homology
[Close]
BLAST of Cla97C05G092270 vs. NCBI nr
Match: KGN57551.1 (hypothetical protein Csa_3G209970 [Cucumis sativus])

HSP 1 Score: 97.8 bits (242), Expect = 1.5e-17
Identity = 50/64 (78.12%), Postives = 54/64 (84.38%), Query Frame = 0 

Query: 5  AAAAILCFLLLSAAAVAVSADAADCIDGCFTACVQKDTRLMQRCEGKCRIKCGPDNEVDE 64
          +A AILC LLLS A V VSADAADCIDGCFTACVQKD+R MQRCE KC IKCGPDN+V+E
Sbjct: 4  SAVAILCLLLLS-AVVTVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCGPDNKVEE 63

Query: 65 NLTR 69
          N  R
Sbjct: 64 NTAR 66

[Close]
BLAST of Cla97C05G092270 vs. NCBI nr
Match: XP_008456107.1 (PREDICTED: uncharacterized protein LOC103496144 isoform X2 [Cucumis melo])

HSP 1 Score: 94.4 bits (233), Expect = 1.6e-16
Identity = 41/45 (91.11%), Postives = 44/45 (97.78%), Query Frame = 0 

Query: 22 VSADAADCIDGCFTACVQKDTRLMQRCEGKCRIKCGPDNEVDENL 67
          VSADAADCID CFTACVQKDTR+MQRCEGKCRIKCGPDN+VDEN+
Sbjct: 25 VSADAADCIDACFTACVQKDTRVMQRCEGKCRIKCGPDNKVDENI 69

[Close]
BLAST of Cla97C05G092270 vs. NCBI nr
Match: XP_016901882.1 (PREDICTED: uncharacterized protein LOC103496144 isoform X1 [Cucumis melo])

HSP 1 Score: 84.7 bits (208), Expect = 1.3e-13
Identity = 40/54 (74.07%), Postives = 43/54 (79.63%), Query Frame = 0 

Query: 22 VSADAADCIDGCFTACVQKD---------TRLMQRCEGKCRIKCGPDNEVDENL 67
          VSADAADCID CFTACVQKD          R+MQRCEGKCRIKCGPDN+VDEN+
Sbjct: 25 VSADAADCIDACFTACVQKDNGWVGCCGAARVMQRCEGKCRIKCGPDNKVDENI 78

[Close]
BLAST of Cla97C05G092270 vs. NCBI nr
Match: NP_001351343.1 (uncharacterized protein LOC100305956 precursor [Glycine max])

HSP 1 Score: 75.1 bits (183), Expect = 1.0e-10
Identity = 35/66 (53.03%), Postives = 47/66 (71.21%), Query Frame = 0 

Query: 1  MEKPAAAAILCFLLLSAAAVAVSADAADCIDGCFTACVQKDTRLMQRCEGKCRIKCGPDN 60
          M+K   A +L FLL+S    +V  DAADC+DGC TACVQ D+RL  RC+ KC I+CGPD+
Sbjct: 1  MKKMVVAMMLIFLLISTQMESVEPDAADCLDGCTTACVQSDSRLQARCDRKCSIRCGPDS 60

Query: 61 EVDENL 67
           + E++
Sbjct: 61 TIKEDM 66

[Close]
BLAST of Cla97C05G092270 vs. NCBI nr
Match: XP_010103864.1 (uncharacterized protein LOC21406914 [Morus notabilis] >EXB97305.1 hypothetical protein L484_024166 [Morus notabilis])

HSP 1 Score: 74.7 bits (182), Expect = 1.3e-10
Identity = 36/66 (54.55%), Postives = 49/66 (74.24%), Query Frame = 0 

Query: 1  MEKPAAAAILCFLLLSAAAVAVSADAADCIDGCFTACVQKDTRLMQRCEGKCRIKCGPDN 60
          M+K   A  +  L LS + +A +A   DCID C+T CVQ++TRLMQRCEGKCRI+CGPD+
Sbjct: 4  MKKTGIAVFVLLLALSYSEIA-TAGPEDCIDSCYTGCVQRNTRLMQRCEGKCRIRCGPDS 63

Query: 61 EVDENL 67
          EV +++
Sbjct: 64 EVKQHV 68

[Close]
BLAST of Cla97C05G092270 vs. TrEMBL
Match: tr|A0A0A0LC00|A0A0A0LC00_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G209970 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 9.8e-18
Identity = 50/64 (78.12%), Postives = 54/64 (84.38%), Query Frame = 0 

Query: 5  AAAAILCFLLLSAAAVAVSADAADCIDGCFTACVQKDTRLMQRCEGKCRIKCGPDNEVDE 64
          +A AILC LLLS A V VSADAADCIDGCFTACVQKD+R MQRCE KC IKCGPDN+V+E
Sbjct: 4  SAVAILCLLLLS-AVVTVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCGPDNKVEE 63

Query: 65 NLTR 69
          N  R
Sbjct: 64 NTAR 66

[Close]
BLAST of Cla97C05G092270 vs. TrEMBL
Match: tr|A0A1S3C2J8|A0A1S3C2J8_CUCME (uncharacterized protein LOC103496144 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496144 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.1e-16
Identity = 41/45 (91.11%), Postives = 44/45 (97.78%), Query Frame = 0 

Query: 22 VSADAADCIDGCFTACVQKDTRLMQRCEGKCRIKCGPDNEVDENL 67
          VSADAADCID CFTACVQKDTR+MQRCEGKCRIKCGPDN+VDEN+
Sbjct: 25 VSADAADCIDACFTACVQKDTRVMQRCEGKCRIKCGPDNKVDENI 69

[Close]
BLAST of Cla97C05G092270 vs. TrEMBL
Match: tr|A0A1S4E0W4|A0A1S4E0W4_CUCME (uncharacterized protein LOC103496144 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496144 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 8.6e-14
Identity = 40/54 (74.07%), Postives = 43/54 (79.63%), Query Frame = 0 

Query: 22 VSADAADCIDGCFTACVQKD---------TRLMQRCEGKCRIKCGPDNEVDENL 67
          VSADAADCID CFTACVQKD          R+MQRCEGKCRIKCGPDN+VDEN+
Sbjct: 25 VSADAADCIDACFTACVQKDNGWVGCCGAARVMQRCEGKCRIKCGPDNKVDENI 78

[Close]
BLAST of Cla97C05G092270 vs. TrEMBL
Match: tr|W9RXP4|W9RXP4_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_024166 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 8.9e-11
Identity = 36/66 (54.55%), Postives = 49/66 (74.24%), Query Frame = 0 

Query: 1  MEKPAAAAILCFLLLSAAAVAVSADAADCIDGCFTACVQKDTRLMQRCEGKCRIKCGPDN 60
          M+K   A  +  L LS + +A +A   DCID C+T CVQ++TRLMQRCEGKCRI+CGPD+
Sbjct: 4  MKKTGIAVFVLLLALSYSEIA-TAGPEDCIDSCYTGCVQRNTRLMQRCEGKCRIRCGPDS 63

Query: 61 EVDENL 67
          EV +++
Sbjct: 64 EVKQHV 68

[Close]
BLAST of Cla97C05G092270 vs. TrEMBL
Match: tr|W9RMA8|W9RMA8_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_024163 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.4e-10
Identity = 36/66 (54.55%), Postives = 48/66 (72.73%), Query Frame = 0 

Query: 1  MEKPAAAAILCFLLLSAAAVAVSADAADCIDGCFTACVQKDTRLMQRCEGKCRIKCGPDN 60
          M+K   A  +  L LS + +A +A   DCID C+T CVQ +TRLMQRCEGKCRI+CGPD+
Sbjct: 1  MKKTGIAVFVLLLALSYSEMA-TAGPEDCIDACYTGCVQGNTRLMQRCEGKCRIRCGPDS 60

Query: 61 EVDENL 67
          EV +++
Sbjct: 61 EVKQHV 65

[Close]
BLAST of Cla97C05G092270 vs. TAIR10
Match: AT1G25275.3 (unknown protein)

HSP 1 Score: 47.8 bits (112), Expect = 3.2e-06
Identity = 25/55 (45.45%), Postives = 32/55 (58.18%), Query Frame = 0 

Query: 6  AAAILCFLLLSAAAVAVSAD--AADCIDGCFTACVQKDTRLMQRCEGKCRIKCGP 59
          AA ++   L S+  +   A     DC DGC TACVQ+D R   RC+ KC I+CGP
Sbjct: 10 AALLIMMALCSSLNMVAEAQLGPGDCYDGCSTACVQRDPRKTSRCDRKCSIRCGP 64

The following BLAST results are available for this feature:
BLAST of Cla97C05G092270 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57551.11.5e-1778.13hypothetical protein Csa_3G209970 [Cucumis sativus][more]
XP_008456107.11.6e-1691.11PREDICTED: uncharacterized protein LOC103496144 isoform X2 [Cucumis melo][more]
XP_016901882.11.3e-1374.07PREDICTED: uncharacterized protein LOC103496144 isoform X1 [Cucumis melo][more]
NP_001351343.11.0e-1053.03uncharacterized protein LOC100305956 precursor [Glycine max][more]
XP_010103864.11.3e-1054.55uncharacterized protein LOC21406914 [Morus notabilis] >EXB97305.1 hypothetical p... [more]
BLAST of Cla97C05G092270 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LC00|A0A0A0LC00_CUCSA9.8e-1878.13Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G209970 PE=4 SV=1[more]
tr|A0A1S3C2J8|A0A1S3C2J8_CUCME1.1e-1691.11uncharacterized protein LOC103496144 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A1S4E0W4|A0A1S4E0W4_CUCME8.6e-1474.07uncharacterized protein LOC103496144 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|W9RXP4|W9RXP4_9ROSA8.9e-1154.55Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_024166 PE=4 SV=1[more]
tr|W9RMA8|W9RMA8_9ROSA4.4e-1054.55Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_024163 PE=4 SV=1[more]
BLAST of Cla97C05G092270 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C05G092270 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G25275.33.2e-0645.45unknown protein[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
biological_process GO:0008150 biological_process
biological_process GO:0080167 response to karrikin
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
cellular_component GO:0005575 cellular_component
cellular_component GO:0005576 extracellular region
molecular_function GO:0022857 transmembrane transporter activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C05G092270.1Cla97C05G092270.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37183FAMILY NOT NAMEDcoord: 1..66

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C05G092270MELO3C019497Melon (DHL92) v3.5.1mewmbB434
Cla97C05G092270ClCG05G009870Watermelon (Charleston Gray)wcgwmbB229
Cla97C05G092270CSPI03G18670Wild cucumber (PI 183967)cpiwmbB221
Cla97C05G092270Cucsa.244190Cucumber (Gy14) v1cgywmbB435
Cla97C05G092270CmaCh04G005050Cucurbita maxima (Rimu)cmawmbB763
Cla97C05G092270CmoCh04G005430Cucurbita moschata (Rifu)cmowmbB735
Cla97C05G092270Lsi05G002000Bottle gourd (USVL1VR-Ls)lsiwmbB329
Cla97C05G092270CsGy3G018510Cucumber (Gy14) v2cgybwmbB206
Cla97C05G092270Carg08174Silver-seed gourdcarwmbB0396
Cla97C05G092270CsaV3_3G018720Cucumber (Chinese Long) v3cucwmbB217
Cla97C05G092270Bhi01G001243Wax gourdwgowmbB179
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C05G092270Silver-seed gourdcarwmbB0395
Cla97C05G092270Silver-seed gourdcarwmbB0681
Cla97C05G092270Cucurbita maxima (Rimu)cmawmbB347
Cla97C05G092270Cucurbita moschata (Rifu)cmowmbB332
Cla97C05G092270Cucumber (Chinese Long) v2cuwmbB215
Cla97C05G092270Melon (DHL92) v3.6.1medwmbB424
Cla97C05G092270Watermelon (97103) v1wmwmbB206