CmaCh04G005050 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G005050
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Nodulin MtN21 /EamA-like transporter family protein, putative isoform 1
Location	Cma_Chr04 : 2577188 .. 2578093 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAATCTACGGCGGCGACAACGGTGGCGATCCTGTGCTTCATCCTACTCTCTGCGGCGGCGATGACGGTTTCAGCCGACGCCGCAGACTGCATCGACGGCTGCTTCACCGCCTGTGTCCAGAAAGACAGTGAGTATTTTTCATCTTCCGATTTCCTCTCTAAACTTCTTCCTTCTTCCAATTGAAACCCTAATTTGTTTCTCTTAGTGATTCTGAAAATCTCTGCGTTTTTCCTTTGTATGTAATTTCAGAAATTAGTTTTCGAATCTGTTAAAATTAGGGCTAAATTAACCTAAAAAAAAAACCCTAAATTTTATGGACGGAATATTAGATTCTTATAAAAAAAAATTCATTTAATAATTAAATAAATTATATGACCTAAAAAAAAGTAATAAAATAAATAAATAAAGTAACAAAAAGTTGGCTATGGTGCAGCGAGGCTGATGCAGCGTTGTGAGGGCAAGTGCAGGATTAAATGCGGTCCAGGTATTCAAATTAATTTCTATAATTTAATTTCAGATTTTTTTTAAAATTTCTTTTTTTAAAATTAATTTTAAAAAAGAAATTAGCGAGAGATTAACTAGTTAAATACATATATTAGTCTTATTGTCGTATGTATTATTGGTTATATTCGTTCGTAATTTAGAAACTTTATTAAATGTGTTTGCAGGTACTAAATTTGAAGGCGAAGATATTATTACTTAAAAGCAACTCGTTTCTTAATAATCATTGTCGTGTTTGAATTGTTGTGTGTTTCTATTTAGTATGCTTTAAATTTGGTTTGATAACTATTTGTTTTTTTTTTAGCGTTTATATATTTAACTTTATTAAATGAAAAATAATATAAAGGTAATTAGATTTGTAAGCTTTATGTATTATTATGTATATATTTTAGGGTATGG

mRNA sequence

ATGAAGAAATCTACGGCGGCGACAACGGTGGCGATCCTGTGCTTCATCCTACTCTCTGCGGCGGCGATGACGGTTTCAGCCGACGCCGCAGACTGCATCGACGGCTGCTTCACCGCCTGTGTCCAGAAAGACACGAGGCTGATGCAGCGTTGTGAGGGCAAGTGCAGGATTAAATGCGGTCCAGGTACTAAATTTGAAGGCGAAGATATTATTACTTAAAAGCAACTCGTTTCTTAATAATCATTGTCGTGTTTGAATTGTTGTGTGTTTCTATTTAGTATGCTTTAAATTTGGTTTGATAACTATTTGTTTTTTTTTTAGCGTTTATATATTTAACTTTATTAAATGAAAAATAATATAAAGGTAATTAGATTTGTAAGCTTTATGTATTATTATGTATATATTTTAGGGTATGG

Coding sequence (CDS)

ATGAAGAAATCTACGGCGGCGACAACGGTGGCGATCCTGTGCTTCATCCTACTCTCTGCGGCGGCGATGACGGTTTCAGCCGACGCCGCAGACTGCATCGACGGCTGCTTCACCGCCTGTGTCCAGAAAGACACGAGGCTGATGCAGCGTTGTGAGGGCAAGTGCAGGATTAAATGCGGTCCAGGTACTAAATTTGAAGGCGAAGATATTATTACTTAA

Protein sequence

MKKSTAATTVAILCFILLSAAAMTVSADAADCIDGCFTACVQKDTRLMQRCEGKCRIKCGPGTKFEGEDIIT

Homology

[Close]

BLAST of CmaCh04G005050 vs. TrEMBL
Match: A0A0A0LC00_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G209970 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.0e-15
Identity = 45/59 (76.27%), Postives = 49/59 (83.05%), Query Frame = 1


Query: 8  TTVAILCFILLSAAAMTVSADAADCIDGCFTACVQKDTRLMQRCEGKCRIKCGPGTKFE 67
          + VAILC +LLSA  +TVSADAADCIDGCFTACVQKD+R MQRCE KC IKCGP  K E
Sbjct: 4  SAVAILCLLLLSAV-VTVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCGPDNKVE 61

[Close]

BLAST of CmaCh04G005050 vs. TrEMBL
Match: A0A151T7U7_CAJCA (Tubby-like F-box protein OS=Cajanus cajan GN=KK1_017695 PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 6.7e-11
Identity = 36/64 (56.25%), Postives = 46/64 (71.88%), Query Frame = 1


Query: 1  MKKSTAATTVAILCFILLSAAAMTVSADAADCIDGCFTACVQKDTRLMQRCEGKCRIKCG 60
          MKK  AA    I+  +++S+   +V  DA DCIDGC TACVQ+D+RL  RCEGKC+IKCG
Sbjct: 1  MKKMVAA----IMLLLVISSQMESVEPDATDCIDGCTTACVQRDSRLQARCEGKCKIKCG 60

Query: 61 PGTK 65
          PG +
Sbjct: 61 PGNQ 60

[Close]

BLAST of CmaCh04G005050 vs. TrEMBL
Match: A0A0S3S1Z0_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.05G013000 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.5e-10
Identity = 36/62 (58.06%), Postives = 46/62 (74.19%), Query Frame = 1


Query: 1  MKKSTAATTVAILCFILLSAAAMTVSADAADCIDGCFTACVQKDTRLMQRCEGKCRIKCG 60
          MKK  AAT    + F+L+++   +V  DAADC+DGC TACVQ+D+RL QRCE KC I+CG
Sbjct: 1  MKKMMAAT----MLFLLIASQMESVVPDAADCLDGCSTACVQRDSRLTQRCERKCSIRCG 58

Query: 61 PG 63
          PG
Sbjct: 61 PG 58

[Close]

BLAST of CmaCh04G005050 vs. TrEMBL
Match: A0A0L9VG55_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan09g268400 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.5e-10
Identity = 36/62 (58.06%), Postives = 46/62 (74.19%), Query Frame = 1


Query: 1  MKKSTAATTVAILCFILLSAAAMTVSADAADCIDGCFTACVQKDTRLMQRCEGKCRIKCG 60
          MKK  AAT    + F+L+++   +V  DAADC+DGC TACVQ+D+RL QRCE KC I+CG
Sbjct: 1  MKKMMAAT----MLFLLIASQMESVVPDAADCLDGCSTACVQRDSRLTQRCERKCSIRCG 58

Query: 61 PG 63
          PG
Sbjct: 61 PG 58

[Close]

BLAST of CmaCh04G005050 vs. TrEMBL
Match: I1KUH4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G183000 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 5.6e-10
Identity = 35/64 (54.69%), Postives = 44/64 (68.75%), Query Frame = 1


Query: 1  MKKSTAATTVAILCFILLSAAAMTVSADAADCIDGCFTACVQKDTRLMQRCEGKCRIKCG 60
          MKK  AA    ++ F+L+S    +V  DAADC+DGC TACVQ D+RL  RCE KC I+CG
Sbjct: 1  MKKMVAA----MMLFLLISTQMKSVEPDAADCLDGCSTACVQSDSRLQARCERKCSIRCG 60

Query: 61 PGTK 65
          PG +
Sbjct: 61 PGNQ 60

[Close]

BLAST of CmaCh04G005050 vs. TAIR10
Match: AT1G25275.3 (AT1G25275.3 unknown protein)

HSP 1 Score: 57.0 bits (136), Expect = 5.6e-09
Identity = 29/68 (42.65%), Postives = 36/68 (52.94%), Query Frame = 1


Query: 1  MKKSTAATTVAILCFILLSAAAMTVSADAA--DCIDGCFTACVQKDTRLMQRCEGKCRIK 60
          MKK        ++   L S+  M   A     DC DGC TACVQ+D R   RC+ KC I+
Sbjct: 2  MKKQVTIVAALLIMMALCSSLNMVAEAQLGPGDCYDGCSTACVQRDPRKTSRCDRKCSIR 61

Query: 61 CGPGTKFE 67
          CGPG  +E
Sbjct: 62 CGPGKHYE 69

[Close]

BLAST of CmaCh04G005050 vs. NCBI nr
Match: gi|659112190|ref|XP_008456107.1| (PREDICTED: uncharacterized protein LOC103496144 [Cucumis melo])

HSP 1 Score: 96.7 bits (239), Expect = 1.8e-17
Identity = 51/67 (76.12%), Postives = 56/67 (83.58%), Query Frame = 1


Query: 1  MKKSTAATTVAILCFILLSA-AAMTVSADAADCIDGCFTACVQKDTRLMQRCEGKCRIKC 60
          M+KS AA   AILC +LLSA A +TVSADAADCID CFTACVQKDTR+MQRCEGKCRIKC
Sbjct: 1  MEKSAAAAA-AILCLLLLSAEAVVTVSADAADCIDACFTACVQKDTRVMQRCEGKCRIKC 60

Query: 61 GPGTKFE 67
          GP  K +
Sbjct: 61 GPDNKVD 66

[Close]

BLAST of CmaCh04G005050 vs. NCBI nr
Match: gi|700202418|gb|KGN57551.1| (hypothetical protein Csa_3G209970 [Cucumis sativus])

HSP 1 Score: 89.4 bits (220), Expect = 2.9e-15
Identity = 45/59 (76.27%), Postives = 49/59 (83.05%), Query Frame = 1


Query: 8  TTVAILCFILLSAAAMTVSADAADCIDGCFTACVQKDTRLMQRCEGKCRIKCGPGTKFE 67
          + VAILC +LLSA  +TVSADAADCIDGCFTACVQKD+R MQRCE KC IKCGP  K E
Sbjct: 4  SAVAILCLLLLSAV-VTVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCGPDNKVE 61

[Close]

BLAST of CmaCh04G005050 vs. NCBI nr
Match: gi|1012351941|gb|KYP63130.1| (Tubby-like F-box protein 8 [Cajanus cajan])

HSP 1 Score: 74.3 bits (181), Expect = 9.6e-11
Identity = 36/64 (56.25%), Postives = 46/64 (71.88%), Query Frame = 1


Query: 1  MKKSTAATTVAILCFILLSAAAMTVSADAADCIDGCFTACVQKDTRLMQRCEGKCRIKCG 60
          MKK  AA    I+  +++S+   +V  DA DCIDGC TACVQ+D+RL  RCEGKC+IKCG
Sbjct: 1  MKKMVAA----IMLLLVISSQMESVEPDATDCIDGCTTACVQRDSRLQARCEGKCKIKCG 60

Query: 61 PGTK 65
          PG +
Sbjct: 61 PGNQ 60

[Close]

BLAST of CmaCh04G005050 vs. NCBI nr
Match: gi|920712776|gb|KOM54025.1| (hypothetical protein LR48_Vigan09g268400 [Vigna angularis])

HSP 1 Score: 72.4 bits (176), Expect = 3.6e-10
Identity = 36/62 (58.06%), Postives = 46/62 (74.19%), Query Frame = 1


Query: 1  MKKSTAATTVAILCFILLSAAAMTVSADAADCIDGCFTACVQKDTRLMQRCEGKCRIKCG 60
          MKK  AAT    + F+L+++   +V  DAADC+DGC TACVQ+D+RL QRCE KC I+CG
Sbjct: 1  MKKMMAAT----MLFLLIASQMESVVPDAADCLDGCSTACVQRDSRLTQRCERKCSIRCG 58

Query: 61 PG 63
          PG
Sbjct: 61 PG 58

[Close]

BLAST of CmaCh04G005050 vs. NCBI nr
Match: gi|734390421|gb|KHN26709.1| (hypothetical protein glysoja_011301 [Glycine soja])

HSP 1 Score: 71.2 bits (173), Expect = 8.1e-10
Identity = 35/64 (54.69%), Postives = 44/64 (68.75%), Query Frame = 1


Query: 1  MKKSTAATTVAILCFILLSAAAMTVSADAADCIDGCFTACVQKDTRLMQRCEGKCRIKCG 60
          MKK  AA    ++ F+L+S    +V  DAADC+DGC TACVQ D+RL  RCE KC I+CG
Sbjct: 1  MKKMVAA----MMLFLLISTQMKSVEPDAADCLDGCSTACVQSDSRLQARCERKCSIRCG 60

Query: 61 PGTK 65
          PG +
Sbjct: 61 PGNQ 60

The following BLAST results are available for this feature:

BLAST of CmaCh04G005050 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh04G005050 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LC00_CUCSA	2.0e-15	76.27	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G209970 PE=4 SV=1	[more]
A0A151T7U7_CAJCA	6.7e-11	56.25	Tubby-like F-box protein OS=Cajanus cajan GN=KK1_017695 PE=3 SV=1	[more]
A0A0S3S1Z0_PHAAN	2.5e-10	58.06	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.05G013000 PE=...	[more]
A0A0L9VG55_PHAAN	2.5e-10	58.06	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan09g268400 PE=4 SV=1	[more]
I1KUH4_SOYBN	5.6e-10	54.69	Uncharacterized protein OS=Glycine max GN=GLYMA_08G183000 PE=4 SV=1	[more]

BLAST of CmaCh04G005050 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G25275.3	5.6e-09	42.65	unknown protein	[more]

BLAST of CmaCh04G005050 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659112190\|ref\|XP_008456107.1\|	1.8e-17	76.12	PREDICTED: uncharacterized protein LOC103496144 [Cucumis melo]	[more]
gi\|700202418\|gb\|KGN57551.1\|	2.9e-15	76.27	hypothetical protein Csa_3G209970 [Cucumis sativus]	[more]
gi\|1012351941\|gb\|KYP63130.1\|	9.6e-11	56.25	Tubby-like F-box protein 8 [Cajanus cajan]	[more]
gi\|920712776\|gb\|KOM54025.1\|	3.6e-10	58.06	hypothetical protein LR48_Vigan09g268400 [Vigna angularis]	[more]
gi\|734390421\|gb\|KHN26709.1\|	8.1e-10	54.69	hypothetical protein glysoja_011301 [Glycine soja]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0080167	response to karrikin
cellular_component	GO:0016020	membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G005050.1	CmaCh04G005050.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37183	FAMILY NOT NAMED	coord: 1..72 score: 1.8
None	No IPR available	PANTHER	PTHR37183:SF1	PLANT THIONIN FAMILY PROTEIN	coord: 1..72 score: 1.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G005050	Cucsa.244190	Cucumber (Gy14) v1	cgycmaB0687
CmaCh04G005050	MELO3C019497	Melon (DHL92) v3.5.1	cmameB691
CmaCh04G005050	ClCG05G009870	Watermelon (Charleston Gray)	cmawcgB659
CmaCh04G005050	CSPI03G18670	Wild cucumber (PI 183967)	cmacpiB705
CmaCh04G005050	CmoCh04G005430	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G005050	Lsi05G002000	Bottle gourd (USVL1VR-Ls)	cmalsiB690
CmaCh04G005050	CsaV3_3G018720	Cucumber (Chinese Long) v3	cmacucB0829
CmaCh04G005050	Cla97C05G092270	Watermelon (97103) v2	cmawmbB763
CmaCh04G005050	Bhi01G001243	Wax gourd	cmawgoB0852
CmaCh04G005050	CsGy3G018510	Cucumber (Gy14) v2	cgybcmaB410
CmaCh04G005050	Carg08174	Silver-seed gourd	carcmaB0529

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G005050	Cucurbita maxima (Rimu)	cmacmaB351
CmaCh04G005050	Cucurbita moschata (Rifu)	cmacmoB701
CmaCh04G005050	Cucumber (Chinese Long) v2	cmacuB697
CmaCh04G005050	Watermelon (97103) v1	cmawmB703
CmaCh04G005050	Cucurbita pepo (Zucchini)	cmacpeB715
CmaCh04G005050	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G005050	Melon (DHL92) v3.6.1	cmamedB777
CmaCh04G005050	Silver-seed gourd	carcmaB0925