CSPI03G18670 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G18670
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Tubby-like F-box protein
Location	Chr3 : 14288685 .. 14292186 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTAAATATTTGTAAGCCAAACAAAATAGAGCATTGAATGGGTTCACAGTTTGGGAAAGTGGGTGAGTTATTTTGGAAAGATGAGATCCAAAAGCCTTTTCATTTAATAAGTAGGAGACGTGGCGGGTGGGAATTTCCAAGCTCATTTAACAAAAAAATTGCTTTACCAATTTGCAATACACATATCTATCTCACCCCCACAAAAAAGTAATCAAATAAAAAGTAGATTCTGATCTAAACACAGTGTCTGGCGGCGATGGAGAGATCAGCGGTGGCGATTTTGTGTTTATTGTTACTTTCTGCGGTGGTGACGGTTTCAGCGGACGCCGCCGACTGCATTGACGGCTGTTTCACTGCTTGTGTCCAGAAAGACTGTGAGTTTAAACACTTCCTCTTTCGCTTGTAACCTTTTCTTTTTTTTTTTTGTTTAGCCCTATTATTTGTGACTGGATCGGCATTTTAGGGCATCCAGGATTCCGTTTCCTTAATTGCAGCAATTGGTTATTGATTTGAAATTAAATGATTAGATTTCAAAATTAATCTAACAAACTAATTTGAGAATAGTGTTTTTGACTTAAAAATTGATATTGATTTGAAATTGGATTTAATGGAAAAAAGAATGAGATTAAGAAAAAGTTGGTTGGGTTGGGTGTGGTGTGGTGCAGCTAGGGCGATGCAGCGTTGTGAGAGGAAGTGTACAATCAAGTGCGGTCCAGGTATTTCTTTTAACCATCATCTTATTTACATTTTGTTTTTCTTCTTTTTAATTTAAATAATTATGTGATATGAAATTAGATACTTAGACCTCTTTTCTGGCAATCCTATAATACATTAATGCCACCTCCCACTTCCATTTTCATTCTTTTCTTTTCATCCATTTCATATTCTTTCTTATCTAATTATGATCATTATTATTCTCTTAATTCTCAAATAAATAAGCTTATCTTTTTCTTTTTATTTTACAATTTTATCTCATCATCTTTTTAACAAATCTCACCTTATGATATTTCTATTGTTCCGTTTTCATAATGAACCATTTCTTTTCTTTTCATTCATTAACCAGTTAATTGTTTTTAAATTTGATCTTCATAACCTAAAATTTATAGAACCCAAATCAATAATAGTTGAGCAAAGGAAAAGTTTTCACACACACTCAAAAAAACAACCAAAATTGTTATTACATATAAGAGAGATAGGTGTAGTAAAGAATATAATATAATGTTTACCTATATAGGGTACAGTATAAGTGTACAATTTACATGTAGCTTCCAAGACATCAAATTTTCCTACAATATAATTAAGTTGTGGTATTAAGTAACAATTAGTAACAATGCAGGCATGTATCACAACAAATATTAAGAATATATATATCAAAGGAAACTCTAAACTAAAAAAAGTTAAACAACTACAAATGAAGATTATTCCAAAGGTTATGATCTTTGTTAGAATTAGTCCAAATCTAGTTTGGATCTAAGAGTTCACAAATGCTAGGGACAACATGTAAACACTCAAATTTAATTCAAAAAGAATTTAGATCAACGTTATATTACCGTCTAAATCTCGACCAAAAGAACATCCAAGGTGTTTAAATCCTTTTAATATGTGAAATTTTGTTAGGTAATTGATGTAATTTTAGAAATTAATATGAAATTTATTCACTAAAGGAGAAAAAAGATCATAATAATCTCTCTTGCCACGTAATTAATTCAATCAAAGATCACAACTACAAGCAATAAAATGCAACTCTAAACTACATATATATAATTGAAGCTAACTACAAAATTTAACAATTACATTACTATTCAATGAAAGCAAGAATCCTTCACTTTACTAACATTGATGAGTTGCTTGAACTTTGTAATTTCTCATTTGCTCAATTCGTACCAAGTTCGATCAAAATCTAAAGAAAGGAGATAAACACTTCAGTTCAACAAAAGAATTTAAGAATTAAAGTATATAAAAAAAAAAGCTTTTATAACATTCAAATTCAGATTAAGAATAAAAAACCTAAACATCTCACGATGGTTTCTCAAAGCAAAAGGCCACAAAAAACCTTTACAATGATTAAGCCCTTCATCGTTAAGTCCTTTTGCTCAAAAAACCATATTTGAATTTAAGCTTTTTGTATAAATTTCAAATATGAACACGAAAGCAAGTAGCATCTGAGGAAAAACTATAAACACACAAACCTAAAATGGAAATAAACAAAATTATCGTGAAAAAGGAAATTACAATTAGAATAAATTTGAAAATCAAGTCATGAAAGTGCACAAAAGAGAAGAAATAATGTACAAATGAAATAGGTAAAGGAAAACAATGGAGGGAGTGGCGGTGGTGGGTGAAGTAGTGTTGAGAGAGGAAGAGGCGGAGCAACCCAAGGTGGGAAGGGGGCTGTGCGAGCAAACGCGTTGGCGTTGTGAGGAAGATGGAGAGTGAAAAATTAGAGTTTAAATAGTAGGAAGGAAATGAGATCTGAAAGTTCTATATAAAATAGGAAAACTCTAAACAAAGGCGTTGGGAGTTTCTCTACAAAAACATTCTTTCTCAATTTACTCCCGACGTACAACGTTCCGGGTTATGGCTAACTTCCAATGCTTGCCATAGCTTGTAAGGAGATATCATTTTTTCTGACTTATTATCTCTTGATGATTGTCTTGTGTGTCGAAAAATTAACTTTTTCTTGTAGTGAGAAGAGTTACCGATGTTGTTGAACTTAGTTATTTATGTTTTTCGTAACCACATTCTAGATTTTAAAATTATATATATTACTTAAATTTTTTTTTTCTAAACCAAGTTAAGTTAAGACCCTTTTAGATTTTACATGTTTGGTAGGACACACCTTTTATCATTATGATTATGATTATTATTAATTATTTTGTTTAACATGTGATAGAAAAATTTGGGAAAATCTGTCTAAAGCCTTTTTAGATTGTATGTGTGTTAGATAGATATAGGTTATCTAGAAATATTTTTAAATTTATTTTTTTAAAGAATTAAAAAGAAAAATTGGAAGAAAACATGTGTTTTTTTTAATGATTTTAATGTGAAATTACATAGAATAATCATATCATCAATCAGTAAGAGGCGTAAATGGGGAGAAACATTCTTTTTCCCCTTAGCCTCCTTTAGATAGTATATATTATTGTTATATATAGTTAAATCTATCATATAGTGTATAAAATGTCACTTTTTTTTGTTTTTGTTTGTAAAATTCTGCAACATATTACACAATGTAATTGCAGATAACAAAGTTGAGGAAAATACTGCACGATGAGACAGAAGAACAAAGGGTAAGGGAGTGAATGTTGTGAGAAATCTTACCTTCTTGTGTTGTAATAAAGATAGTTGAGGGAAGATACTTTATGTATGTTATAAACAAATGTTTCCTTCTTCTTCTTCTTCTTCTTTCTTGTTTTAATAACTATGATGTGATGTTTGTGAAAGCTAGACGTAAGCATTCTCTAAATTAGTGCTTTTCTTTGTGGCATATGTGTTTTTTTCT

mRNA sequence

ATGGAGAGATCAGCGGTGGCGATTTTGTGTTTATTGTTACTTTCTGCGGTGGTGACGGTTTCAGCGGACGCCGCCGACTGCATTGACGGCTGTTTCACTGCTTGTGTCCAGAAAGACTCTAGGGCGATGCAGCGTTGTGAGAGGAAGTGTACAATCAAGTGCGGTCCAGATAACAAAGTTGAGGAAAATACTGCACGATGA

Coding sequence (CDS)

ATGGAGAGATCAGCGGTGGCGATTTTGTGTTTATTGTTACTTTCTGCGGTGGTGACGGTTTCAGCGGACGCCGCCGACTGCATTGACGGCTGTTTCACTGCTTGTGTCCAGAAAGACTCTAGGGCGATGCAGCGTTGTGAGAGGAAGTGTACAATCAAGTGCGGTCCAGATAACAAAGTTGAGGAAAATACTGCACGATGA

Homology

[Close]

BLAST of CSPI03G18670 vs. TrEMBL
Match: A0A0A0LC00_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G209970 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 5.6e-28
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 1


Query: 1  MERSAVAILCLLLLSAVVTVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCGPDNKV 60
          MERSAVAILCLLLLSAVVTVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCGPDNKV
Sbjct: 1  MERSAVAILCLLLLSAVVTVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCGPDNKV 60

Query: 61 EENTAR 67
          EENTAR
Sbjct: 61 EENTAR 66

[Close]

BLAST of CSPI03G18670 vs. TrEMBL
Match: A0A0S3S1Z0_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.05G013000 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 6.8e-10
Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = 1


Query: 5  AVAILCLLLLSAVVTVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCGPDN 59
          A  +L LL+ S + +V  DAADC+DGC TACVQ+DSR  QRCERKC+I+CGP N
Sbjct: 6  AATMLFLLIASQMESVVPDAADCLDGCSTACVQRDSRLTQRCERKCSIRCGPGN 59

[Close]

BLAST of CSPI03G18670 vs. TrEMBL
Match: A0A0L9VG55_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan09g268400 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 6.8e-10
Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = 1


Query: 5  AVAILCLLLLSAVVTVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCGPDN 59
          A  +L LL+ S + +V  DAADC+DGC TACVQ+DSR  QRCERKC+I+CGP N
Sbjct: 6  AATMLFLLIASQMESVVPDAADCLDGCSTACVQRDSRLTQRCERKCSIRCGPGN 59

[Close]

BLAST of CSPI03G18670 vs. TrEMBL
Match: V7BV54_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G210400g PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 6.8e-10
Identity = 35/63 (55.56%), Postives = 48/63 (76.19%), Query Frame = 1


Query: 1  MERSAVAILCLLLL-SAVVTVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCGPDNK 60
          M++   A++ LLL+ S + +V  DAADC+DGC T CVQ+DSR   RCERKC+I+CGPD+ 
Sbjct: 1  MKKMMAAMMFLLLIASQMESVVPDAADCLDGCTTGCVQRDSRLQARCERKCSIRCGPDST 60

Query: 61 VEE 63
          V+E
Sbjct: 61 VKE 63

[Close]

BLAST of CSPI03G18670 vs. TrEMBL
Match: C6SY67_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 8.9e-10
Identity = 34/64 (53.12%), Postives = 47/64 (73.44%), Query Frame = 1


Query: 1  MERSAVAILCLLLLSAVV-TVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCGPDNK 60
          M++   A++  LL+S  + +V  DAADC DGC TACVQ DSR   RCERKC+I+CGPD+ 
Sbjct: 1  MKKMVAAMMLFLLISTQMKSVEPDAADCSDGCSTACVQSDSRLQARCERKCSIRCGPDST 60

Query: 61 VEEN 64
          ++E+
Sbjct: 61 IKED 64

[Close]

BLAST of CSPI03G18670 vs. TAIR10
Match: AT1G25275.3 (AT1G25275.3 unknown protein)

HSP 1 Score: 54.7 bits (130), Expect = 2.6e-08
Identity = 27/59 (45.76%), Postives = 38/59 (64.41%), Query Frame = 1


Query: 7  AILCLLLLSAVVTVSADA----ADCIDGCFTACVQKDSRAMQRCERKCTIKCGPDNKVE 62
          A+L ++ L + + + A+A     DC DGC TACVQ+D R   RC+RKC+I+CGP    E
Sbjct: 11 ALLIMMALCSSLNMVAEAQLGPGDCYDGCSTACVQRDPRKTSRCDRKCSIRCGPGKHYE 69

[Close]

BLAST of CSPI03G18670 vs. NCBI nr
Match: gi|700202418|gb|KGN57551.1| (hypothetical protein Csa_3G209970 [Cucumis sativus])

HSP 1 Score: 131.0 bits (328), Expect = 8.0e-28
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 1


Query: 1  MERSAVAILCLLLLSAVVTVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCGPDNKV 60
          MERSAVAILCLLLLSAVVTVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCGPDNKV
Sbjct: 1  MERSAVAILCLLLLSAVVTVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCGPDNKV 60

Query: 61 EENTAR 67
          EENTAR
Sbjct: 61 EENTAR 66

[Close]

BLAST of CSPI03G18670 vs. NCBI nr
Match: gi|659112190|ref|XP_008456107.1| (PREDICTED: uncharacterized protein LOC103496144 [Cucumis melo])

HSP 1 Score: 102.4 bits (254), Expect = 3.0e-19
Identity = 56/70 (80.00%), Postives = 59/70 (84.29%), Query Frame = 1


Query: 1  MERSAVA---ILCLLLLSA--VVTVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCG 60
          ME+SA A   ILCLLLLSA  VVTVSADAADCID CFTACVQKD+R MQRCE KC IKCG
Sbjct: 1  MEKSAAAAAAILCLLLLSAEAVVTVSADAADCIDACFTACVQKDTRVMQRCEGKCRIKCG 60

Query: 61 PDNKVEENTA 66
          PDNKV+EN A
Sbjct: 61 PDNKVDENIA 70

[Close]

BLAST of CSPI03G18670 vs. NCBI nr
Match: gi|920712776|gb|KOM54025.1| (hypothetical protein LR48_Vigan09g268400 [Vigna angularis])

HSP 1 Score: 70.9 bits (172), Expect = 9.8e-10
Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = 1


Query: 5  AVAILCLLLLSAVVTVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCGPDN 59
          A  +L LL+ S + +V  DAADC+DGC TACVQ+DSR  QRCERKC+I+CGP N
Sbjct: 6  AATMLFLLIASQMESVVPDAADCLDGCSTACVQRDSRLTQRCERKCSIRCGPGN 59

[Close]

BLAST of CSPI03G18670 vs. NCBI nr
Match: gi|593695917|ref|XP_007148457.1| (hypothetical protein PHAVU_006G210400g [Phaseolus vulgaris])

HSP 1 Score: 70.9 bits (172), Expect = 9.8e-10
Identity = 35/63 (55.56%), Postives = 48/63 (76.19%), Query Frame = 1


Query: 1  MERSAVAILCLLLL-SAVVTVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCGPDNK 60
          M++   A++ LLL+ S + +V  DAADC+DGC T CVQ+DSR   RCERKC+I+CGPD+ 
Sbjct: 1  MKKMMAAMMFLLLIASQMESVVPDAADCLDGCTTGCVQRDSRLQARCERKCSIRCGPDST 60

Query: 61 VEE 63
          V+E
Sbjct: 61 VKE 63

[Close]

BLAST of CSPI03G18670 vs. NCBI nr
Match: gi|255627691|gb|ACU14190.1| (unknown [Glycine max])

HSP 1 Score: 70.5 bits (171), Expect = 1.3e-09
Identity = 34/64 (53.12%), Postives = 47/64 (73.44%), Query Frame = 1


Query: 1  MERSAVAILCLLLLSAVV-TVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCGPDNK 60
          M++   A++  LL+S  + +V  DAADC DGC TACVQ DSR   RCERKC+I+CGPD+ 
Sbjct: 1  MKKMVAAMMLFLLISTQMKSVEPDAADCSDGCSTACVQSDSRLQARCERKCSIRCGPDST 60

Query: 61 VEEN 64
          ++E+
Sbjct: 61 IKED 64

The following BLAST results are available for this feature:

BLAST of CSPI03G18670 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI03G18670 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LC00_CUCSA	5.6e-28	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G209970 PE=4 SV=1	[more]
A0A0S3S1Z0_PHAAN	6.8e-10	62.96	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.05G013000 PE=...	[more]
A0A0L9VG55_PHAAN	6.8e-10	62.96	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan09g268400 PE=4 SV=1	[more]
V7BV54_PHAVU	6.8e-10	55.56	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G210400g PE=4 SV=1	[more]
C6SY67_SOYBN	8.9e-10	53.13	Putative uncharacterized protein OS=Glycine max PE=2 SV=1	[more]

BLAST of CSPI03G18670 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G25275.3	2.6e-08	45.76	unknown protein	[more]

BLAST of CSPI03G18670 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202418\|gb\|KGN57551.1\|	8.0e-28	100.00	hypothetical protein Csa_3G209970 [Cucumis sativus]	[more]
gi\|659112190\|ref\|XP_008456107.1\|	3.0e-19	80.00	PREDICTED: uncharacterized protein LOC103496144 [Cucumis melo]	[more]
gi\|920712776\|gb\|KOM54025.1\|	9.8e-10	62.96	hypothetical protein LR48_Vigan09g268400 [Vigna angularis]	[more]
gi\|593695917\|ref\|XP_007148457.1\|	9.8e-10	55.56	hypothetical protein PHAVU_006G210400g [Phaseolus vulgaris]	[more]
gi\|255627691\|gb\|ACU14190.1\|	1.3e-09	53.13	unknown [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0080167	response to karrikin
cellular_component	GO:0016020	membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G18670.1	CSPI03G18670.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37183	FAMILY NOT NAMED	coord: 1..64 score: 2.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI03G18670	MELO3C019497	Melon (DHL92) v3.5.1	cpimeB241
CSPI03G18670	ClCG05G009870	Watermelon (Charleston Gray)	cpiwcgB237
CSPI03G18670	Lsi05G002000	Bottle gourd (USVL1VR-Ls)	cpilsiB209
CSPI03G18670	CsaV3_3G018720	Cucumber (Chinese Long) v3	cpicucB144
CSPI03G18670	Cla97C05G092270	Watermelon (97103) v2	cpiwmbB221
CSPI03G18670	Bhi01G001243	Wax gourd	cpiwgoB283
CSPI03G18670	Cucsa.244190	Cucumber (Gy14) v1	cgycpiB366
CSPI03G18670	CmaCh04G005050	Cucurbita maxima (Rimu)	cmacpiB705
CSPI03G18670	CmoCh04G005430	Cucurbita moschata (Rifu)	cmocpiB698
CSPI03G18670	CsGy3G018510	Cucumber (Gy14) v2	cgybcpiB110
CSPI03G18670	Carg08174	Silver-seed gourd	carcpiB0405

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G18670	Cucurbita maxima (Rimu)	cmacpiB326
CSPI03G18670	Cucurbita moschata (Rifu)	cmocpiB315
CSPI03G18670	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G18670	Watermelon (97103) v1	cpiwmB242
CSPI03G18670	Cucurbita pepo (Zucchini)	cpecpiB208
CSPI03G18670	Cucurbita pepo (Zucchini)	cpecpiB388
CSPI03G18670	Melon (DHL92) v3.6.1	cpimedB239
CSPI03G18670	Silver-seed gourd	carcpiB0685