ClCG05G009870 (gene) Watermelon (Charleston Gray)

NameClCG05G009870
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr05 : 10943773 .. 10947626 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAACTTGCTTTACCAATTTGTATACGGAGAAACAAGCTAATAGAATAGAAGTACTTGTGATCTGAAACAGGGGCGGCCATGGAGAAACCCGCGGCGGCGGCGATTTTGTGCTTCTTGCTACTTTCTGCGGCGGCGGTGGCGGTTTCAGCCGACGCTGCCGACTGCATTGACGGCTGTTTCACCGCTTGTGTCCAGAAAGACAGTGAGTTTTCTTTTTTTTAACATTTCCTTTCTCTAAATTTCTTCGTATCTCACTTCTCAAATTGAGCCCTAATTCCTTTTTCCCCCTAATTTAATCGGCGTTTTAGGCATCTACGATTCTGAAATACTTGCATGGAAAATTATTGGGGTTTTCTTTTTTCTTTTTTTATAGCAATTTCTGAAGTTCCAGCAACTCATTATTGGGACAGAAAATAATTTGTTGTTTTAAAATATTTTAGTTGGTTTAAATACTATATTGTAGCCAGGTTAGCATATTCTACTAAAAATTATCATACACTATATTCCATAAATCTTTACCCCTTTTTATTTTCCTAAAATTTCTTTAGCTTTCGGATTGTTTCCTAGAAAATTTGAAAACAAAGGATTCAATAAAAACATAGTTGCATTTTATGTTTTCGGGTGTATGATTGATGGTAGATGCATAAATTTATGATTGTAAGGTTGATGAAAAAAGGATTATCACACAATGTTATAGCAATTCGAAAACCAAATTGTAAAGCATTGATAAAAATACTAAAAGACAAAACACAAGTCTTTATAACTTAATTCATTGTAATACCCTAGGTTTGGGGCAATGTGCTCAAGAAAGATAATTTCGTTAATATAAAGTAAAATAATTACAATGTTGTATTTATTTGTAAATAAATGACAATTACAGTGATCGCGAAAAACCTAACTTGGTGAATGGTTACTTAGATTTTCCCTAAATGTGAGATTTTCTCTCATAGAAGTTCAGACTCCTTCTTGATGATACTCCTACCTTTTCACCTTCCAATGAAGAACACTTCACTCACAACACTTGAGCTCCTTTAGGTGTGAGAATCTTTCTCAATGATGCGGTAGACAATTCGATAAGATCTAGAGACACATTCAAGATGAATAGTAGCCAAAGCTTCACAATCGCAAAAATTGACACGTAATCTCCTTCTTGAACACCAACACCACAAATGACTCAATACACTTTCAAAAGCGAACAACCCTAAAAGGAGAACAATACTCTCTCAAATATACACGACGGAAAAGAAGAGTCGAACCCAAACCATAGTCACAGAGCCCAGAGAAGGAAAAGATCCGTAGGAACAATTACCTATAATTTTTAAGATAAGGAAAAAATATTCAGTCAGAAATAACAATCATAGAGACATCCCTAGAACAATCGAGGGACAAATAGACAAACATCTCATGAGATAACTGTCGCAACAACTTCAAAAAGTGTAGCTAATATCAAATCTTGAGGATCTCACATTTGAAAAATTAAGAGACCACATACTTTTTATAAAATAGATGAATCATCTATTTTTCTCATTACTAATTGATTTTAAGAGGGGTTGATGGATTTTGGTTAAAAAATAAATGAATCAAAGTCTTAAAAATGTATAGATTTGAAAATGACTTGAAAAAATTGGATATGGTGCAGCGAGGCTGATGCAGCGTTGTGAGGGCAAGTGTAGAATTAAGTGCGGTCCAGGTATTTATTTATTTCTTTATTTATTCGAATCAACTTTTATTATTTAATTCTTCTACATTTTCTCATTTCTTTAATTAAGCATATTTACATTTTTTTCATTTTCTATTCATTTTCCCTTAATTTAATTATTGATGTGATATCAAACTTTATACTTAGGTCTCTTTTATGATTTGAATATCAATTGAAATTTATGAGAATGATAGAATATTAATGGCAGCTGCTACTTCCATTTTTACTTTTTTTTTCTTTTTTCTTTTTTTAATGAATTCTTTGATTGAATCAAATATTTCAATTTTCATATTTTGATGTAGTACTTTTTATTTATTTATTTATTTTTTTTATGATACAAGGAAAAGAAATTACGATTAAAATAGAAAAACTATAGGGAAAAACTAATTTTATAATATCGATTAATTGAGAGGACAAATTTCTTTTTTTAGTACAAGAAGAGTGGAGAATTGAACTATGATTGGAAAAATAGATAAAAGAAGATACTCTTTAAATTTTTGTTTTTTTTCTTTCTTTTTTTAGAATTCGATTACTATGAATTTAAGAGAAAAACAGTTTAAATTTTAAAAATACAAAGTTAATATTAAAATTGTTATCAAGTACAATTAGCGGTAGGAGGATTCCTAACACAGATTTGTCATTAAGTTATAGTTGGTATATGCATAATTTAATTATGCTATCTTTGCAACTAAGCATAGTTCATAAAATAACATATATTTCTTAATTAATTGACATTTTTGTCCTAATAAATTGAATTTGTTATGATCTTGTTTTAGATTCATCTTCCAAACTATATTAATGCTTAAACATCTCTTGTGTCTAATAAATATATGACATTTAGAGTATAATGAATTGATTTAATGTTTAATAAATATATGACATATAAGAGTATAATGAATTGATTTAATGTTTAGTGAGATGATAAATTTTCAATTTTGTTTTCACCACATCCATGATTTTAAGAAAAATATTGAATATGTTAATGATTCAGACACAAAATTTAAATTTAAAGATCTATAAGAAAATTTTTAAAATTCAAAGGCTGAATAGGAAAAATATATATTTTGGGTGATCTGATTTTCATCTTTTATTATTATTATTTTTTTATCTTATTGTCACTATTGTTGTCTTAAATATAGAAGTTTTATCTTTTAATTTTGAGATTTTGATTTGATCATTTTTTGAATAAAAGAGGTTAAAAATTAAATTCGTAAAGGTCAAGTTCTGTTCATTAGTCTTCAGTGTTTCGTTTTATAAACATACTTTCATTGGTTGGTTTCTTTGCTTTTTTTTTAATTATCTTTTAGAGATTTTTAAAAAAATTTCTTGCCAAGTTTTCAAAAAAGTTTGGATAGTCTAAGAAAAGAGTAGATTTTGAAAATGTATTATTGTTTTTTGAATTTAGTTATGTTTCTTAAGACGAAAACAATTGTAAATAAATTGTGAGAAAATAATTAATGATTATTAACGAAGCCTAAAAAGAAAAGAAAAAAGAGGTTCTAAATGTCAGTCTCAATATTTGGAAAGTGTCAATAAAAGGCCACATATATTTTTTTTCAAAAATTATAAATATTAAAATATCATAAAAATGTTTAAATTGATGGATAATCATACCCTTGTTAAATAAGAATAAATGTCTTGTAATTAACAAGAGGTGTAATATTTTATTGAATTCAGTGTTATATTTAGTTGGTTTTTCTTTTCTTTTTACTATTAACACTTAGGGGTTGAAGAGAGTCTTTCTATAATGTGTTCGTCAATAATATATGCTTAAATCAGTTAAGCTATTTAACCAAATTGTATAAAAATAGTCGTAACTTTGTAATGACGTAGCTTGATTCATTAGAAAAATAATACGTTTGATGTAAAAATGTGATTGCAGATAACGAAGTTGATGAAAATCTTACTCGTTGAGATAGAATAATTAAGGGCATCAATGTTGTGAGAAACTTACCTTCTTCTTCTGTCGAGGAAAAAACATTTTATGTATGCTTCGAATCAAAGCATTTTTTCTTTCTTATATTATTTTCATTGTTTGTGAAATCTAGATGTTGCATGTTATAAAAATGCTTATTTGTGTGGTTATTTATTGTTTTTGTTCCTTTACATTTGAATCAGATTTGACGATATTGCTTCGTATTGAAGGAGATCGAG

mRNA sequence

AAAACTTGCTTTACCAATTTGTATACGGAGAAACAAGCTAATAGAATAGAAGTACTTGTGATCTGAAACAGGGGCGGCCATGGAGAAACCCGCGGCGGCGGCGATTTTGTGCTTCTTGCTACTTTCTGCGGCGGCGGTGGCGGTTTCAGCCGACGCTGCCGACTGCATTGACGGCTGTTTCACCGCTTGTGTCCAGAAAGACACGAGGCTGATGCAGCGTTGTGAGGGCAAGTGTAGAATTAAGTGCGGTCCAGATAACGAAGTTGATGAAAATCTTACTCGTTGAGATAGAATAATTAAGGGCATCAATGTTGTGAGAAACTTACCTTCTTCTTCTGTCGAGGAAAAAACATTTTATGTATGCTTCGAATCAAAGCATTTTTTCTTTCTTATATTATTTTCATTGTTTGTGAAATCTAGATGTTGCATGTTATAAAAATGCTTATTTGTGTGGTTATTTATTGTTTTTGTTCCTTTACATTTGAATCAGATTTGACGATATTGCTTCGTATTGAAGGAGATCGAG

Coding sequence (CDS)

ATGGAGAAACCCGCGGCGGCGGCGATTTTGTGCTTCTTGCTACTTTCTGCGGCGGCGGTGGCGGTTTCAGCCGACGCTGCCGACTGCATTGACGGCTGTTTCACCGCTTGTGTCCAGAAAGACACGAGGCTGATGCAGCGTTGTGAGGGCAAGTGTAGAATTAAGTGCGGTCCAGATAACGAAGTTGATGAAAATCTTACTCGTTGA

Protein sequence

MEKPAAAAILCFLLLSAAAVAVSADAADCIDGCFTACVQKDTRLMQRCEGKCRIKCGPDNEVDENLTR
BLAST of ClCG05G009870 vs. TrEMBL
Match: A0A0A0LC00_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G209970 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 7.4e-20
Identity = 50/64 (78.12%), Postives = 54/64 (84.38%), Query Frame = 1

Query: 5  AAAAILCFLLLSAAAVAVSADAADCIDGCFTACVQKDTRLMQRCEGKCRIKCGPDNEVDE 64
          +A AILC LLLSA  V VSADAADCIDGCFTACVQKD+R MQRCE KC IKCGPDN+V+E
Sbjct: 4  SAVAILCLLLLSAV-VTVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCGPDNKVEE 63

Query: 65 NLTR 69
          N  R
Sbjct: 64 NTAR 66

BLAST of ClCG05G009870 vs. TrEMBL
Match: A0A151T7U7_CAJCA (Tubby-like F-box protein OS=Cajanus cajan GN=KK1_017695 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 5.1e-13
Identity = 35/59 (59.32%), Postives = 44/59 (74.58%), Query Frame = 1

Query: 3  KPAAAAILCFLLLSAAAVAVSADAADCIDGCFTACVQKDTRLMQRCEGKCRIKCGPDNE 62
          K   AAI+  L++S+   +V  DA DCIDGC TACVQ+D+RL  RCEGKC+IKCGP N+
Sbjct: 2  KKMVAAIMLLLVISSQMESVEPDATDCIDGCTTACVQRDSRLQARCEGKCKIKCGPGNQ 60

BLAST of ClCG05G009870 vs. TrEMBL
Match: W9RXP4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_024166 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 8.8e-13
Identity = 36/66 (54.55%), Postives = 49/66 (74.24%), Query Frame = 1

Query: 1  MEKPAAAAILCFLLLSAAAVAVSADAADCIDGCFTACVQKDTRLMQRCEGKCRIKCGPDN 60
          M+K   A  +  L LS + +A +A   DCID C+T CVQ++TRLMQRCEGKCRI+CGPD+
Sbjct: 4  MKKTGIAVFVLLLALSYSEIA-TAGPEDCIDSCYTGCVQRNTRLMQRCEGKCRIRCGPDS 63

Query: 61 EVDENL 67
          EV +++
Sbjct: 64 EVKQHV 68

BLAST of ClCG05G009870 vs. TrEMBL
Match: C6SY67_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.1e-12
Identity = 35/65 (53.85%), Postives = 46/65 (70.77%), Query Frame = 1

Query: 3  KPAAAAILCFLLLSAAAVAVSADAADCIDGCFTACVQKDTRLMQRCEGKCRIKCGPDNEV 62
          K   AA++ FLL+S    +V  DAADC DGC TACVQ D+RL  RCE KC I+CGPD+ +
Sbjct: 2  KKMVAAMMLFLLISTQMKSVEPDAADCSDGCSTACVQSDSRLQARCERKCSIRCGPDSTI 61

Query: 63 DENLT 68
           E+++
Sbjct: 62 KEDMS 66

BLAST of ClCG05G009870 vs. TrEMBL
Match: W9RMA8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_024163 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 4.4e-12
Identity = 36/66 (54.55%), Postives = 48/66 (72.73%), Query Frame = 1

Query: 1  MEKPAAAAILCFLLLSAAAVAVSADAADCIDGCFTACVQKDTRLMQRCEGKCRIKCGPDN 60
          M+K   A  +  L LS + +A +A   DCID C+T CVQ +TRLMQRCEGKCRI+CGPD+
Sbjct: 1  MKKTGIAVFVLLLALSYSEMA-TAGPEDCIDACYTGCVQGNTRLMQRCEGKCRIRCGPDS 60

Query: 61 EVDENL 67
          EV +++
Sbjct: 61 EVKQHV 65

BLAST of ClCG05G009870 vs. TAIR10
Match: AT1G25275.3 (AT1G25275.3 unknown protein)

HSP 1 Score: 54.3 bits (129), Expect = 3.4e-08
Identity = 25/55 (45.45%), Postives = 30/55 (54.55%), Query Frame = 1

Query: 6  AAAILCFLLLSAAAVAVSADAA--DCIDGCFTACVQKDTRLMQRCEGKCRIKCGP 59
          AA ++   L S+  +   A     DC DGC TACVQ+D R   RC+ KC I+CGP
Sbjct: 10 AALLIMMALCSSLNMVAEAQLGPGDCYDGCSTACVQRDPRKTSRCDRKCSIRCGP 64

BLAST of ClCG05G009870 vs. NCBI nr
Match: gi|659112190|ref|XP_008456107.1| (PREDICTED: uncharacterized protein LOC103496144 [Cucumis melo])

HSP 1 Score: 114.8 bits (286), Expect = 6.0e-23
Identity = 58/69 (84.06%), Postives = 61/69 (88.41%), Query Frame = 1

Query: 1  MEKPAAAA--ILCFLLLSA-AAVAVSADAADCIDGCFTACVQKDTRLMQRCEGKCRIKCG 60
          MEK AAAA  ILC LLLSA A V VSADAADCID CFTACVQKDTR+MQRCEGKCRIKCG
Sbjct: 1  MEKSAAAAAAILCLLLLSAEAVVTVSADAADCIDACFTACVQKDTRVMQRCEGKCRIKCG 60

Query: 61 PDNEVDENL 67
          PDN+VDEN+
Sbjct: 61 PDNKVDENI 69

BLAST of ClCG05G009870 vs. NCBI nr
Match: gi|700202418|gb|KGN57551.1| (hypothetical protein Csa_3G209970 [Cucumis sativus])

HSP 1 Score: 104.0 bits (258), Expect = 1.1e-19
Identity = 50/64 (78.12%), Postives = 54/64 (84.38%), Query Frame = 1

Query: 5  AAAAILCFLLLSAAAVAVSADAADCIDGCFTACVQKDTRLMQRCEGKCRIKCGPDNEVDE 64
          +A AILC LLLSA  V VSADAADCIDGCFTACVQKD+R MQRCE KC IKCGPDN+V+E
Sbjct: 4  SAVAILCLLLLSAV-VTVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCGPDNKVEE 63

Query: 65 NLTR 69
          N  R
Sbjct: 64 NTAR 66

BLAST of ClCG05G009870 vs. NCBI nr
Match: gi|1012351941|gb|KYP63130.1| (Tubby-like F-box protein 8 [Cajanus cajan])

HSP 1 Score: 81.3 bits (199), Expect = 7.4e-13
Identity = 35/59 (59.32%), Postives = 44/59 (74.58%), Query Frame = 1

Query: 3  KPAAAAILCFLLLSAAAVAVSADAADCIDGCFTACVQKDTRLMQRCEGKCRIKCGPDNE 62
          K   AAI+  L++S+   +V  DA DCIDGC TACVQ+D+RL  RCEGKC+IKCGP N+
Sbjct: 2  KKMVAAIMLLLVISSQMESVEPDATDCIDGCTTACVQRDSRLQARCEGKCKIKCGPGNQ 60

BLAST of ClCG05G009870 vs. NCBI nr
Match: gi|703127567|ref|XP_010103864.1| (hypothetical protein L484_024166 [Morus notabilis])

HSP 1 Score: 80.5 bits (197), Expect = 1.3e-12
Identity = 36/66 (54.55%), Postives = 49/66 (74.24%), Query Frame = 1

Query: 1  MEKPAAAAILCFLLLSAAAVAVSADAADCIDGCFTACVQKDTRLMQRCEGKCRIKCGPDN 60
          M+K   A  +  L LS + +A +A   DCID C+T CVQ++TRLMQRCEGKCRI+CGPD+
Sbjct: 4  MKKTGIAVFVLLLALSYSEIA-TAGPEDCIDSCYTGCVQRNTRLMQRCEGKCRIRCGPDS 63

Query: 61 EVDENL 67
          EV +++
Sbjct: 64 EVKQHV 68

BLAST of ClCG05G009870 vs. NCBI nr
Match: gi|255627691|gb|ACU14190.1| (unknown [Glycine max])

HSP 1 Score: 80.1 bits (196), Expect = 1.6e-12
Identity = 35/65 (53.85%), Postives = 46/65 (70.77%), Query Frame = 1

Query: 3  KPAAAAILCFLLLSAAAVAVSADAADCIDGCFTACVQKDTRLMQRCEGKCRIKCGPDNEV 62
          K   AA++ FLL+S    +V  DAADC DGC TACVQ D+RL  RCE KC I+CGPD+ +
Sbjct: 2  KKMVAAMMLFLLISTQMKSVEPDAADCSDGCSTACVQSDSRLQARCERKCSIRCGPDSTI 61

Query: 63 DENLT 68
           E+++
Sbjct: 62 KEDMS 66

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LC00_CUCSA7.4e-2078.13Uncharacterized protein OS=Cucumis sativus GN=Csa_3G209970 PE=4 SV=1[more]
A0A151T7U7_CAJCA5.1e-1359.32Tubby-like F-box protein OS=Cajanus cajan GN=KK1_017695 PE=3 SV=1[more]
W9RXP4_9ROSA8.8e-1354.55Uncharacterized protein OS=Morus notabilis GN=L484_024166 PE=4 SV=1[more]
C6SY67_SOYBN1.1e-1253.85Putative uncharacterized protein OS=Glycine max PE=2 SV=1[more]
W9RMA8_9ROSA4.4e-1254.55Uncharacterized protein OS=Morus notabilis GN=L484_024163 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G25275.33.4e-0845.45 unknown protein[more]
Match NameE-valueIdentityDescription
gi|659112190|ref|XP_008456107.1|6.0e-2384.06PREDICTED: uncharacterized protein LOC103496144 [Cucumis melo][more]
gi|700202418|gb|KGN57551.1|1.1e-1978.13hypothetical protein Csa_3G209970 [Cucumis sativus][more]
gi|1012351941|gb|KYP63130.1|7.4e-1359.32Tubby-like F-box protein 8 [Cajanus cajan][more]
gi|703127567|ref|XP_010103864.1|1.3e-1254.55hypothetical protein L484_024166 [Morus notabilis][more]
gi|255627691|gb|ACU14190.1|1.6e-1253.85unknown [Glycine max][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
biological_process GO:0008150 biological_process
biological_process GO:0080167 response to karrikin
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
cellular_component GO:0005575 cellular_component
cellular_component GO:0005576 extracellular region
molecular_function GO:0022857 transmembrane transporter activity
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG05G009870.1ClCG05G009870.1mRNA


Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37183FAMILY NOT NAMEDcoord: 1..66
score: 4.1
NoneNo IPR availablePANTHERPTHR37183:SF1PLANT THIONIN FAMILY PROTEINcoord: 1..66
score: 4.1