Cucsa.244190 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.244190
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Tubby-like F-box protein
Location	scaffold02135 : 26091 .. 29507 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTTATTTTGGAAAGATGAGATCCAAAAGCCTTTTCATTTAATAAGTAGGAGACGTGGCGGGTGGGAATTTCCAAGCTCATTTAACAAAAAAATTGCTTTACCAATTTGCAATACACATATCTATCTCACCCCCACAAAAAAGTAATCAAATAAAAAGTAGATTCTGATCTAAACACAGTGTCTGGCGGCGATGGAGAGATCAGCGGTGGCGATTTTGTGTTTATTGTTACTTTCTGCGGTGGTGACGGTTTCAGCGGACGCCGCCGACTGCATTGACGGCTGTTTCACTGCTTGTGTCCAGAAAGACTGTGAGTTTAAACACTTCCTCTTTCGCTTGTAACCTTTTCTTTTTTTTTTtGTTTAGCCCTATTATTTGTGACTGGATCGGCATTTTAGGGCATCCAGGATTCCGTTTCCTTAATTGCAGCAATTGGTTATTGATTTGAAATTAAATGATTAGATTTCAAAATTAATCTAACAAACTAATTTGAGAATAGTGTTTTTGACTTAAAAATTGATATTGATTTGAAATTGGATTTAATGGAAAAAAGAATGAGATTAAGAAAAAGTTGGTTGGGTTGGGTGTGGTGTGGTGCAGCTAGGGCGATGCAGCGTTGTGAGAGGAAGTGTACAATCAAGTGCGGTCCAGGTATTTCTTTTAACCATCATCTTATTTACATTTTGTTTTTCTTCTTTTtAATTTAAATAATTATGTGATATGAAATTAGATACTTAGACCTCTTTTCTGGCAATCCTATAATACATTAATGCCACCTCCCACTTCCATTTTCATTCTTTTCTTTTCATCCATTTCATATTCTTTCTTATCTAATTATGATCATTATTATTCTCTTAATTCTCAAATAAATAAGCTTATCTTTTTCTTTTTATTTTACAATTTTATCTCATCATCTTTTTAACAAATCTCACCTTATGATATTTCTATTGTTCCGTTTTCATAATGAACCATTTCTTTTCTTTTCATTCATTAACCAGTTAATTGTTTTTAAATTTGATCTTCATAACCTAAAATTTATAGAACCCAAATCAATAATAGTTGAGCAAAGGAAAAGTTTTCACACACACTCAAAAAAaCAACCAAAATTGTTATTACATATAAGAGAGATAGGTGTAGTAAAGAATATAATATAATGTTTACCTATATAGGGTACAGTATAAGTGTACAATTTACATGTAGCTTCCAAGACATCAAATTTTCCTACAATATAATTAAGTTGTGGTATTAAGTAACAATTAGTAACAATGCAGGCATGTATCACAACAAATATTAAGAATATATATATCAAAGGAAACTCTAAACTAAAAAAaGTTAAACAACTACAAATGAAGATTATTCCAAAGGTTATGATCTTTGTTAGAATTAGTCCAAATCTAGTTTGGATCTAAGAGTTCACAAATGCTAGGGACAACATGTAAACACTCAAATTTAATTCAAAAAGAATTTAGATCAACGTTATATTACCGTCTAAATCTCGAC

mRNA sequence

AGTTATTTTGGAAAGATGAGATCCAAAAGCCTTTTCATTTAATAAGTAGGAGACGTGGCGGGTGGGAATTTCCAAGCTCATTTAACAAAAAAATTGCTTTACCAATTTGCAATACACATATCTATCTCACCCCCACAAAAAAGTAATCAAATAAAAAGTAGATTCTGATCTAAACACAGTGTCTGGCGGCGATGGAGAGATCAGCGGTGGCGATTTTGTGTTTATTGTTACTTTCTGCGGTGGTGACGGTTTCAGCGGACGCCGCCGACTGCATTGACGGCTGTTTCACTGCTTGTGTCCAGAAAGACTCTAGGGCGATGCAGCGTTGTGAGAGGAAGTGTACAATCAAGTGCGGTCCAGGTATTTCTTTTAACCATCATCTTATTTACATTTTGTTTTTCTTCTTTTTAATTTAAATAATTATGTGATATGAAATTAGATACTTAGACCTCTTTTCTGGCAATCCTATAATACATTAATGCCACCTCCCACTTCCATTTTCATTCTTTTCTTTTCATCCATTTCATATTCTTTCTTATCTAATTATGATCATTATTATTCTCTTAATTCTCAAATAAATAAGCTTATCTTTTTCTTTTTATTTTACAATTTTATCTCATCATCTTTTTAACAAATCTCACCTTATGATATTTCTATTGTTCCGTTTTCATAATGAACCATTTCTTTTCTTTTCATTCATTAACCAGTTAATTGTTTTTAAATTTGATCTTCATAACCTAAAATTTATAGAACCCAAATCAATAATAGTTGAGCAAAGGAAAAGTTTTCACACACACTCAAAAAAACAACCAAAATTGTTATTACATATAAGAGAGATAGGTGTAGTAAAGAATATAATATAATGTTTACCTATATAGGGTACAGTATAAGTGTACAATTTACATGTAGCTTCCAAGACATCAAATTTTCCTACAATATAATTAAGTTGTGGTATTAAGTAACAATTAGTAACAATGCAGGCATGTATCACAACAAATATTAAGAATATATATATCAAAGGAAACTCTAAACTAAAAAAAGTTAAACAACTACAAATGAAGATTATTCCAAAGGTTATGATCTTTGTTAGAATTAGTCCAAATCTAGTTTGGATCTAAGAGTTCACAAATGCTAGGGACAACATGTAAACACTCAAATTTAATTCAAAAAGAATTTAGATCAACGTTATATTACCGTCTAAATCTCGAC

Coding sequence (CDS)

ATGGAGAGATCAGCGGTGGCGATTTTGTGTTTATTGTTACTTTCTGCGGTGGTGACGGTTTCAGCGGACGCCGCCGACTGCATTGACGGCTGTTTCACTGCTTGTGTCCAGAAAGACTCTAGGGCGATGCAGCGTTGTGAGAGGAAGTGTACAATCAAGTGCGGTCCAGGTATTTCTTTTAACCATCATCTTATTTACATTTTGTTTTTCTTCTTTTtAATTTAA

Protein sequence

MERSAVAILCLLLLSAVVTVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCGPGISFNHHLIYILFFFFLI*

Homology

[Close]

BLAST of Cucsa.244190 vs. TrEMBL
Match: A0A0A0LC00_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G209970 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 9.3e-24
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1


Query: 1  MERSAVAILCLLLLSAVVTVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCGP 57
          MERSAVAILCLLLLSAVVTVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCGP
Sbjct: 1  MERSAVAILCLLLLSAVVTVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCGP 56

[Close]

BLAST of Cucsa.244190 vs. TrEMBL
Match: A0A0S3S1Z0_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.05G013000 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.3e-12
Identity = 37/59 (62.71%), Postives = 45/59 (76.27%), Query Frame = 1


Query: 5  AVAILCLLLLSAVVTVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCGPGISFNHH 64
          A  +L LL+ S + +V  DAADC+DGC TACVQ+DSR  QRCERKC+I+CGPG   NHH
Sbjct: 6  AATMLFLLIASQMESVVPDAADCLDGCSTACVQRDSRLTQRCERKCSIRCGPG--NNHH 62

[Close]

BLAST of Cucsa.244190 vs. TrEMBL
Match: A0A0L9VG55_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan09g268400 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.3e-12
Identity = 37/59 (62.71%), Postives = 45/59 (76.27%), Query Frame = 1


Query: 5  AVAILCLLLLSAVVTVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCGPGISFNHH 64
          A  +L LL+ S + +V  DAADC+DGC TACVQ+DSR  QRCERKC+I+CGPG   NHH
Sbjct: 6  AATMLFLLIASQMESVVPDAADCLDGCSTACVQRDSRLTQRCERKCSIRCGPG--NNHH 62

[Close]

BLAST of Cucsa.244190 vs. TrEMBL
Match: A0A0B2RJR7_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_005527 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.8e-11
Identity = 37/76 (48.68%), Postives = 52/76 (68.42%), Query Frame = 1


Query: 1  MERSAVAILCLLLL--SAVVTVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCGPGI 60
          M++  VA++ +LLL  + + +V  DAADC+DGC TACVQ DSR   RC+RKC+I+CGPG 
Sbjct: 1  MKKMVVAMMLILLLISTQMESVEPDAADCLDGCTTACVQSDSRLQARCDRKCSIRCGPGN 60

Query: 61 SFNHHLIYILFFFFLI 75
            N       +FFF++
Sbjct: 61 QPNPK-----YFFFIL 71

[Close]

BLAST of Cucsa.244190 vs. TrEMBL
Match: I1MDS8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_15G049600 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 5.3e-11
Identity = 34/70 (48.57%), Postives = 48/70 (68.57%), Query Frame = 1


Query: 5  AVAILCLLLLSAVVTVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCGPGISFNHHL 64
          A+ ++ LL+ + + +V  DAADC+DGC TACVQ DSR   RC+RKC+I+CGPG   N   
Sbjct: 7  AMMLIFLLISTQMESVEPDAADCLDGCTTACVQSDSRLQARCDRKCSIRCGPGNQPNPK- 66

Query: 65 IYILFFFFLI 75
              +FFF++
Sbjct: 67 ----YFFFIL 71

[Close]

BLAST of Cucsa.244190 vs. TAIR10
Match: AT1G25275.3 (AT1G25275.3 unknown protein)

HSP 1 Score: 62.0 bits (149), Expect = 1.8e-10
Identity = 27/55 (49.09%), Postives = 38/55 (69.09%), Query Frame = 1


Query: 7  AILCLLLLSAVVTVSADA----ADCIDGCFTACVQKDSRAMQRCERKCTIKCGPG 58
          A+L ++ L + + + A+A     DC DGC TACVQ+D R   RC+RKC+I+CGPG
Sbjct: 11 ALLIMMALCSSLNMVAEAQLGPGDCYDGCSTACVQRDPRKTSRCDRKCSIRCGPG 65

[Close]

BLAST of Cucsa.244190 vs. NCBI nr
Match: gi|700202418|gb|KGN57551.1| (hypothetical protein Csa_3G209970 [Cucumis sativus])

HSP 1 Score: 117.1 bits (292), Expect = 1.3e-23
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1


Query: 1  MERSAVAILCLLLLSAVVTVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCGP 57
          MERSAVAILCLLLLSAVVTVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCGP
Sbjct: 1  MERSAVAILCLLLLSAVVTVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCGP 56

[Close]

BLAST of Cucsa.244190 vs. NCBI nr
Match: gi|659112190|ref|XP_008456107.1| (PREDICTED: uncharacterized protein LOC103496144 [Cucumis melo])

HSP 1 Score: 94.0 bits (232), Expect = 1.2e-16
Identity = 49/61 (80.33%), Postives = 51/61 (83.61%), Query Frame = 1


Query: 1  MERSAVA---ILCLLLLSA--VVTVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCG 57
          ME+SA A   ILCLLLLSA  VVTVSADAADCID CFTACVQKD+R MQRCE KC IKCG
Sbjct: 1  MEKSAAAAAAILCLLLLSAEAVVTVSADAADCIDACFTACVQKDTRVMQRCEGKCRIKCG 60

[Close]

BLAST of Cucsa.244190 vs. NCBI nr
Match: gi|920712776|gb|KOM54025.1| (hypothetical protein LR48_Vigan09g268400 [Vigna angularis])

HSP 1 Score: 80.1 bits (196), Expect = 1.8e-12
Identity = 37/59 (62.71%), Postives = 45/59 (76.27%), Query Frame = 1


Query: 5  AVAILCLLLLSAVVTVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCGPGISFNHH 64
          A  +L LL+ S + +V  DAADC+DGC TACVQ+DSR  QRCERKC+I+CGPG   NHH
Sbjct: 6  AATMLFLLIASQMESVVPDAADCLDGCSTACVQRDSRLTQRCERKCSIRCGPG--NNHH 62

[Close]

BLAST of Cucsa.244190 vs. NCBI nr
Match: gi|734405683|gb|KHN33485.1| (hypothetical protein glysoja_005527 [Glycine soja])

HSP 1 Score: 76.3 bits (186), Expect = 2.6e-11
Identity = 37/76 (48.68%), Postives = 52/76 (68.42%), Query Frame = 1


Query: 1  MERSAVAILCLLLL--SAVVTVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCGPGI 60
          M++  VA++ +LLL  + + +V  DAADC+DGC TACVQ DSR   RC+RKC+I+CGPG 
Sbjct: 1  MKKMVVAMMLILLLISTQMESVEPDAADCLDGCTTACVQSDSRLQARCDRKCSIRCGPGN 60

Query: 61 SFNHHLIYILFFFFLI 75
            N       +FFF++
Sbjct: 61 QPNPK-----YFFFIL 71

[Close]

BLAST of Cucsa.244190 vs. NCBI nr
Match: gi|947061216|gb|KRH10477.1| (hypothetical protein GLYMA_15G049600 [Glycine max])

HSP 1 Score: 74.7 bits (182), Expect = 7.6e-11
Identity = 34/70 (48.57%), Postives = 48/70 (68.57%), Query Frame = 1


Query: 5  AVAILCLLLLSAVVTVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCGPGISFNHHL 64
          A+ ++ LL+ + + +V  DAADC+DGC TACVQ DSR   RC+RKC+I+CGPG   N   
Sbjct: 7  AMMLIFLLISTQMESVEPDAADCLDGCTTACVQSDSRLQARCDRKCSIRCGPGNQPNPK- 66

Query: 65 IYILFFFFLI 75
              +FFF++
Sbjct: 67 ----YFFFIL 71

The following BLAST results are available for this feature:

BLAST of Cucsa.244190 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LC00_CUCSA	9.3e-24	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G209970 PE=4 SV=1	[more]
A0A0S3S1Z0_PHAAN	1.3e-12	62.71	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.05G013000 PE=...	[more]
A0A0L9VG55_PHAAN	1.3e-12	62.71	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan09g268400 PE=4 SV=1	[more]
A0A0B2RJR7_GLYSO	1.8e-11	48.68	Uncharacterized protein OS=Glycine soja GN=glysoja_005527 PE=4 SV=1	[more]
I1MDS8_SOYBN	5.3e-11	48.57	Uncharacterized protein OS=Glycine max GN=GLYMA_15G049600 PE=4 SV=1	[more]

BLAST of Cucsa.244190 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G25275.3	1.8e-10	49.09	unknown protein	[more]

BLAST of Cucsa.244190 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202418\|gb\|KGN57551.1\|	1.3e-23	100.00	hypothetical protein Csa_3G209970 [Cucumis sativus]	[more]
gi\|659112190\|ref\|XP_008456107.1\|	1.2e-16	80.33	PREDICTED: uncharacterized protein LOC103496144 [Cucumis melo]	[more]
gi\|920712776\|gb\|KOM54025.1\|	1.8e-12	62.71	hypothetical protein LR48_Vigan09g268400 [Vigna angularis]	[more]
gi\|734405683\|gb\|KHN33485.1\|	2.6e-11	48.68	hypothetical protein glysoja_005527 [Glycine soja]	[more]
gi\|947061216\|gb\|KRH10477.1\|	7.6e-11	48.57	hypothetical protein GLYMA_15G049600 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016020	membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.244190.1	Cucsa.244190.1	mRNA
Cucsa.244190.2	Cucsa.244190.2	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37183	FAMILY NOT NAMED	coord: 1..64 score: 2.6
None	No IPR available	PANTHER	PTHR37183:SF1	PLANT THIONIN FAMILY PROTEIN	coord: 1..64 score: 2.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.244190	MELO3C019497	Melon (DHL92) v3.5.1	cgymeB417
Cucsa.244190	ClCG05G009870	Watermelon (Charleston Gray)	cgywcgB433
Cucsa.244190	CSPI03G18670	Wild cucumber (PI 183967)	cgycpiB366
Cucsa.244190	CmaCh04G005050	Cucurbita maxima (Rimu)	cgycmaB0687
Cucsa.244190	CmoCh04G005430	Cucurbita moschata (Rifu)	cgycmoB0687
Cucsa.244190	Lsi05G002000	Bottle gourd (USVL1VR-Ls)	cgylsiB404
Cucsa.244190	CsaV3_3G018720	Cucumber (Chinese Long) v3	cgycucB369
Cucsa.244190	Cla97C05G092270	Watermelon (97103) v2	cgywmbB435
Cucsa.244190	Bhi01G001243	Wax gourd	cgywgoB493
Cucsa.244190	Carg08174	Silver-seed gourd	carcgyB0436

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None