Lsi05G002000 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G002000
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Nodulin MtN21 /EamA-like transporter family protein, putative isoform 1
Location	chr05 : 2767454 .. 2768449 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAATCTGCGGCGGCGGCGATTTTGTGCTTCTTGCTACTTTCTGCGGCGGCGGTGACGGTTTCAGCCGACGCTGCCGACTGCATCGACGGCTGTTTCACCGCTTGTGTCCAGAAAGACAGTAAGTTTTTTTAAAAGAAAAAATTCCTTTCTCTAAATTTCTTCGTATCTCAATTCTCAAATTGAGCCCTAATTTTTTTAGCCCTAATTGTCACTCGGCGTTTTAGGCATCCACGATTCTGAAAAAACTTCATTAGAGTACAGTGATTTTTCCAGCAATTCATTGTCGGGAAAGAAATTTATTTATTGTTTTATAATATTTTAGTTGGTTTAAATATTATAGAGTATATATTACATGAACTTTAGCATTTTGTTACTTTTGGTCTCTTATGTTCATAACTTTCATTTTTGCAATTTCTCGATAAATTTTGTTTAGTAGATGATTCGAAATATCGTTGCTCAGTATTTTTGTAATTTTAATTTTTTTTTCCTCTTCATTTTTTTAAAATCTTAATACACACTCCACTTAGTGTGTGTATATTGAAAAACGGTTGAAGAAGATTAATGATGTATAAGACATTAAATTGGTAGTTCAAAGAACTTTGTTTAATTTGTAGGACATTTTTTTAAAGTTTAGGACCTATATTTAACATTAAATGTCTAATTTCAATAATTTATTAGATATTTTATTTAATATTTAGGTACCTAATTAATACAAATCTGTAATTACAACTTTAGAATATTATTCTGTATATATAGAGAGAATAATATTTAACTTTTTTTTTTTTTAATATTTAACATTTTTATCCATGTACTATATAAATGAATAAAATAAATGAAAAAATGGTATAGATTTAAAATGACTTAAAAGACCATGAGTAACAAAAAGTTGGTTGTGGTGCAGCGAGGCTGATGCAGCGTTGTGAGGGCAAGTGTAAAATTAAGTGCGGTCCAGGTATTAATTATTTATTGGAATTAACTTTTATAATTTAA

mRNA sequence

ATGGAGAAATCTGCGGCGGCGGCGATTTTGTGCTTCTTGCTACTTTCTGCGGCGGCGGTGACGGTTTCAGCCGACGCTGCCGACTGCATCGACGGCTGTTTCACCGCTTGTGTCCAGAAAGACACGAGGCTGATGCAGCGTTGTGAGGGCAAGTGTAAAATTAAGTGCGGTCCAGGTATTAATTATTTATTGGAATTAACTTTTATAATTTAA

Coding sequence (CDS)

ATGGAGAAATCTGCGGCGGCGGCGATTTTGTGCTTCTTGCTACTTTCTGCGGCGGCGGTGACGGTTTCAGCCGACGCTGCCGACTGCATCGACGGCTGTTTCACCGCTTGTGTCCAGAAAGACACGAGGCTGATGCAGCGTTGTGAGGGCAAGTGTAAAATTAAGTGCGGTCCAGGTATTAATTATTTATTGGAATTAACTTTTATAATTTAA

Protein sequence

MEKSAAAAILCFLLLSAAAVTVSADAADCIDGCFTACVQKDTRLMQRCEGKCKIKCGPGINYLLELTFII

Homology

[Close]

BLAST of Lsi05G002000 vs. TrEMBL
Match: A0A0A0LC00_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G209970 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.9e-15
Identity = 48/58 (82.76%), Postives = 50/58 (86.21%), Query Frame = 1


Query: 1  MEKSAAAAILCFLLLSAAAVTVSADAADCIDGCFTACVQKDTRLMQRCEGKCKIKCGP 59
          ME+SA A ILC LLLSA  VTVSADAADCIDGCFTACVQKD+R MQRCE KC IKCGP
Sbjct: 1  MERSAVA-ILCLLLLSAV-VTVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCGP 56

[Close]

BLAST of Lsi05G002000 vs. TrEMBL
Match: A0A151T7U7_CAJCA (Tubby-like F-box protein OS=Cajanus cajan GN=KK1_017695 PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.0e-11
Identity = 36/57 (63.16%), Postives = 43/57 (75.44%), Query Frame = 1


Query: 3  KSAAAAILCFLLLSAAAVTVSADAADCIDGCFTACVQKDTRLMQRCEGKCKIKCGPG 60
          K   AAI+  L++S+   +V  DA DCIDGC TACVQ+D+RL  RCEGKCKIKCGPG
Sbjct: 2  KKMVAAIMLLLVISSQMESVEPDATDCIDGCTTACVQRDSRLQARCEGKCKIKCGPG 58

[Close]

BLAST of Lsi05G002000 vs. TrEMBL
Match: A0A0L9VG55_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan09g268400 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 3.8e-11
Identity = 35/60 (58.33%), Postives = 45/60 (75.00%), Query Frame = 1


Query: 3  KSAAAAILCFLLLSAAAVTVSADAADCIDGCFTACVQKDTRLMQRCEGKCKIKCGPGINY 62
          K   AA + FLL+++   +V  DAADC+DGC TACVQ+D+RL QRCE KC I+CGPG N+
Sbjct: 2  KKMMAATMLFLLIASQMESVVPDAADCLDGCSTACVQRDSRLTQRCERKCSIRCGPGNNH 61

[Close]

BLAST of Lsi05G002000 vs. TrEMBL
Match: A0A0S3S1Z0_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.05G013000 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 3.8e-11
Identity = 35/60 (58.33%), Postives = 45/60 (75.00%), Query Frame = 1


Query: 3  KSAAAAILCFLLLSAAAVTVSADAADCIDGCFTACVQKDTRLMQRCEGKCKIKCGPGINY 62
          K   AA + FLL+++   +V  DAADC+DGC TACVQ+D+RL QRCE KC I+CGPG N+
Sbjct: 2  KKMMAATMLFLLIASQMESVVPDAADCLDGCSTACVQRDSRLTQRCERKCSIRCGPGNNH 61

[Close]

BLAST of Lsi05G002000 vs. TrEMBL
Match: I1MDS8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_15G049600 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.9e-10
Identity = 34/59 (57.63%), Postives = 42/59 (71.19%), Query Frame = 1


Query: 1  MEKSAAAAILCFLLLSAAAVTVSADAADCIDGCFTACVQKDTRLMQRCEGKCKIKCGPG 60
          M+K   A +L FLL+S    +V  DAADC+DGC TACVQ D+RL  RC+ KC I+CGPG
Sbjct: 1  MKKMVVAMMLIFLLISTQMESVEPDAADCLDGCTTACVQSDSRLQARCDRKCSIRCGPG 59

[Close]

BLAST of Lsi05G002000 vs. TAIR10
Match: AT1G25275.3 (AT1G25275.3 unknown protein)

HSP 1 Score: 53.9 bits (128), Expect = 4.6e-08
Identity = 27/59 (45.76%), Postives = 35/59 (59.32%), Query Frame = 1


Query: 6  AAAILCFLLLSAAAVTVSADAA--DCIDGCFTACVQKDTRLMQRCEGKCKIKCGPGINY 63
          AA ++   L S+  +   A     DC DGC TACVQ+D R   RC+ KC I+CGPG +Y
Sbjct: 10 AALLIMMALCSSLNMVAEAQLGPGDCYDGCSTACVQRDPRKTSRCDRKCSIRCGPGKHY 68

[Close]

BLAST of Lsi05G002000 vs. NCBI nr
Match: gi|659112190|ref|XP_008456107.1| (PREDICTED: uncharacterized protein LOC103496144 [Cucumis melo])

HSP 1 Score: 98.2 bits (243), Expect = 6.0e-18
Identity = 53/61 (86.89%), Postives = 55/61 (90.16%), Query Frame = 1


Query: 1  MEKSAAAA--ILCFLLLSA-AAVTVSADAADCIDGCFTACVQKDTRLMQRCEGKCKIKCG 59
          MEKSAAAA  ILC LLLSA A VTVSADAADCID CFTACVQKDTR+MQRCEGKC+IKCG
Sbjct: 1  MEKSAAAAAAILCLLLLSAEAVVTVSADAADCIDACFTACVQKDTRVMQRCEGKCRIKCG 60

[Close]

BLAST of Lsi05G002000 vs. NCBI nr
Match: gi|700202418|gb|KGN57551.1| (hypothetical protein Csa_3G209970 [Cucumis sativus])

HSP 1 Score: 89.4 bits (220), Expect = 2.8e-15
Identity = 48/58 (82.76%), Postives = 50/58 (86.21%), Query Frame = 1


Query: 1  MEKSAAAAILCFLLLSAAAVTVSADAADCIDGCFTACVQKDTRLMQRCEGKCKIKCGP 59
          ME+SA A ILC LLLSA  VTVSADAADCIDGCFTACVQKD+R MQRCE KC IKCGP
Sbjct: 1  MERSAVA-ILCLLLLSAV-VTVSADAADCIDGCFTACVQKDSRAMQRCERKCTIKCGP 56

[Close]

BLAST of Lsi05G002000 vs. NCBI nr
Match: gi|1012351941|gb|KYP63130.1| (Tubby-like F-box protein 8 [Cajanus cajan])

HSP 1 Score: 77.0 bits (188), Expect = 1.4e-11
Identity = 36/57 (63.16%), Postives = 43/57 (75.44%), Query Frame = 1


Query: 3  KSAAAAILCFLLLSAAAVTVSADAADCIDGCFTACVQKDTRLMQRCEGKCKIKCGPG 60
          K   AAI+  L++S+   +V  DA DCIDGC TACVQ+D+RL  RCEGKCKIKCGPG
Sbjct: 2  KKMVAAIMLLLVISSQMESVEPDATDCIDGCTTACVQRDSRLQARCEGKCKIKCGPG 58

[Close]

BLAST of Lsi05G002000 vs. NCBI nr
Match: gi|920712776|gb|KOM54025.1| (hypothetical protein LR48_Vigan09g268400 [Vigna angularis])

HSP 1 Score: 75.1 bits (183), Expect = 5.4e-11
Identity = 35/60 (58.33%), Postives = 45/60 (75.00%), Query Frame = 1


Query: 3  KSAAAAILCFLLLSAAAVTVSADAADCIDGCFTACVQKDTRLMQRCEGKCKIKCGPGINY 62
          K   AA + FLL+++   +V  DAADC+DGC TACVQ+D+RL QRCE KC I+CGPG N+
Sbjct: 2  KKMMAATMLFLLIASQMESVVPDAADCLDGCSTACVQRDSRLTQRCERKCSIRCGPGNNH 61

[Close]

BLAST of Lsi05G002000 vs. NCBI nr
Match: gi|947061216|gb|KRH10477.1| (hypothetical protein GLYMA_15G049600 [Glycine max])

HSP 1 Score: 72.8 bits (177), Expect = 2.7e-10
Identity = 34/59 (57.63%), Postives = 42/59 (71.19%), Query Frame = 1


Query: 1  MEKSAAAAILCFLLLSAAAVTVSADAADCIDGCFTACVQKDTRLMQRCEGKCKIKCGPG 60
          M+K   A +L FLL+S    +V  DAADC+DGC TACVQ D+RL  RC+ KC I+CGPG
Sbjct: 1  MKKMVVAMMLIFLLISTQMESVEPDAADCLDGCTTACVQSDSRLQARCDRKCSIRCGPG 59

The following BLAST results are available for this feature:

BLAST of Lsi05G002000 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi05G002000 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LC00_CUCSA	1.9e-15	82.76	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G209970 PE=4 SV=1	[more]
A0A151T7U7_CAJCA	1.0e-11	63.16	Tubby-like F-box protein OS=Cajanus cajan GN=KK1_017695 PE=3 SV=1	[more]
A0A0L9VG55_PHAAN	3.8e-11	58.33	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan09g268400 PE=4 SV=1	[more]
A0A0S3S1Z0_PHAAN	3.8e-11	58.33	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.05G013000 PE=...	[more]
I1MDS8_SOYBN	1.9e-10	57.63	Uncharacterized protein OS=Glycine max GN=GLYMA_15G049600 PE=4 SV=1	[more]

BLAST of Lsi05G002000 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G25275.3	4.6e-08	45.76	unknown protein	[more]

BLAST of Lsi05G002000 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659112190\|ref\|XP_008456107.1\|	6.0e-18	86.89	PREDICTED: uncharacterized protein LOC103496144 [Cucumis melo]	[more]
gi\|700202418\|gb\|KGN57551.1\|	2.8e-15	82.76	hypothetical protein Csa_3G209970 [Cucumis sativus]	[more]
gi\|1012351941\|gb\|KYP63130.1\|	1.4e-11	63.16	Tubby-like F-box protein 8 [Cajanus cajan]	[more]
gi\|920712776\|gb\|KOM54025.1\|	5.4e-11	58.33	hypothetical protein LR48_Vigan09g268400 [Vigna angularis]	[more]
gi\|947061216\|gb\|KRH10477.1\|	2.7e-10	57.63	hypothetical protein GLYMA_15G049600 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0080167	response to karrikin
biological_process	GO:0008150	biological_process
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0016020	membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G002000.1	Lsi05G002000.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37183	FAMILY NOT NAMED	coord: 1..59 score: 3.5
None	No IPR available	PANTHER	PTHR37183:SF1	PLANT THIONIN FAMILY PROTEIN	coord: 1..59 score: 3.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi05G002000	CSPI03G18670	Wild cucumber (PI 183967)	cpilsiB209
Lsi05G002000	Cucsa.244190	Cucumber (Gy14) v1	cgylsiB404
Lsi05G002000	CmaCh04G005050	Cucurbita maxima (Rimu)	cmalsiB690
Lsi05G002000	CmoCh04G005430	Cucurbita moschata (Rifu)	cmolsiB683
Lsi05G002000	MELO3C019497	Melon (DHL92) v3.5.1	lsimeB368
Lsi05G002000	ClCG05G009870	Watermelon (Charleston Gray)	lsiwcgB332
Lsi05G002000	Cla97C05G092270	Watermelon (97103) v2	lsiwmbB329
Lsi05G002000	Bhi01G001243	Wax gourd	lsiwgoB431
Lsi05G002000	CsGy3G018510	Cucumber (Gy14) v2	cgyblsiB198
Lsi05G002000	Carg08174	Silver-seed gourd	carlsiB346
Lsi05G002000	CsaV3_3G018720	Cucumber (Chinese Long) v3	cuclsiB230

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G002000	Cucurbita maxima (Rimu)	cmalsiB316
Lsi05G002000	Cucurbita moschata (Rifu)	cmolsiB304
Lsi05G002000	Cucurbita pepo (Zucchini)	cpelsiB177
Lsi05G002000	Cucurbita pepo (Zucchini)	cpelsiB369
Lsi05G002000	Cucumber (Chinese Long) v2	culsiB211
Lsi05G002000	Watermelon (97103) v1	lsiwmB361
Lsi05G002000	Melon (DHL92) v3.6.1	lsimedB384
Lsi05G002000	Silver-seed gourd	carlsiB595