Cp4.1LG01g02060 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g02060
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG01 : 2629480 .. 2632005 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAGCCTAAAACCATGGAGAAGGAAGGCGTTCCCGTTCCCGTTCTTGTTGTTAAGGAGTCGAAGAAGACCACAACAACCAAGAAGGATGCACGATCAAAGAAGGAGAAGGATGTCAATGTCGAAAGTGAAGAAAAAAAGAGTCAGGATGATAATGAAGCTAACCATAAGAAGGTTGAGGTATACAAAAATTTCATCTTGTTTTAATTTTAATACTAGATTTGAACTGATGACGACACCCATTTTCAATCCTCTGCTCTATCAACGGAGTTATATACGGTCATTTTTGACACATTATCCTTGTTTTAATAGCTATACGTGCTCTAACTTCATCTTCATGTCCATGTCTTTTCTTAGGGTGAAGCAACCAAAGAAGCAATCGAGGACAAAAAGGAGAAGCCTAAAGAAGAAGACCACAAAGAAGACGCGAAGGTTCAAGCAGCATCGCTTGTCGCCACCACTGCCGCACCTGCGCTGGTCGAAGACAAAAATGCCACCGTCGAAGTAGCTGCTGTCGTGCCTAAGGAACTCACCTTCGAAGTAGCGGCTGTCCAGAATAAGAAACCCACCGTCGAGGCACCGGTAGCGGACGGAAAACCCGCCGTCGAGGCACCGGTAACGGCCGGGAAACCCGCCGTCGAGACACCGGTAGCGGCCGAGAAACCGACCGTGGAGGCACCGGTAGAGGCGAAGAAGCCCGCCGTCGAGGCACCGGTGGAGGCAAAGAAGCCCGCCGTCGAGGCACCGGTAGAGGCAAAGAAGCCCGCCGTCGAGGCACCAGTAGAGGCGGAGAAACCCACGATTAAGGTACCAGGAGAGGCAAAGGAACCAAGCGTTGAGGCGGCAGCGGCAGCATCAGCAGCAGTGGCAGCGGAACAAAAACATTAGCAGGAAAAACACAATGAAAATGATTGGAATATGTAACATTTAATTCATTTCATTTTAGAAATTATGAACGGCAATGCCAAATGCTTATAATTCTTTTATTCCATAACTTCCATCCCACTAATTTTTTCCCCCAAATTAAATTAAATTTATTTTATTTTTTGCCACGTGGCCGATATTTAGCCGGGGATTCCAAGAGCTTCATTCATAAACATCATTTCCTGTATCGTATGCGCAGAAACAAACGAACCGAAAGATCAGATCTGAAACAGGGGCGGCGATGAAGAAATCTACGGCGGCGACGGGGGTGGCGATTCTGTGCTTCATCCTACTTTCTGCGGCAGCGATGACGGTTTCAGCCGACGCCGCAGACTGCATCGACGGCTGCTTCACCGCCTGTGTCCAGAAAGACAGTGAGTATTTTTCATCTTCCGATTTCCTCTCTAAAATTCTTCCTTCTTCCAATTGAAACCCTAATTTGTTTCTCTTAGCGATTCTGAAGATCTCTGCGTTTTTCCTTTGTATGTAATTTCAGAAATTAGTTTACGAATCTGTTAAAATTAGGGCTAAATTAACCTAAAAAAAGAACCCTAGATTTTACACTTATTTTTATTTATTTAGATTATTATCAAATAATTCATTTAATAATTAAATAAATTATATGACCTAAAAATAAGTAACAAAAAGTATTGTAAAATAAATAATAAATAAATAAAATAAGTAACAAAAAGTTGGCTATGGTGCAGCGAGGCTGATGCAGCGTTGTGAGGGCAAGTGCAGGATTAAATGCGGTCCAGGTATTCAAATTATTTTTTATAATTTAATTTAATTTTTAAATTTCCTTAACCTTAATGTAAATAGCGGAGTTCAACTAGTTAAATACATATATTAGTTTTATTGTCATAAGGTTAGAGATTAAGATCATCCAATTCCAAGTGTCGGGCTTCCAGTTCCAAATGTCGGGCTTATGATGTTCCACATTGCTTAGGGATCGGGCTTATGATGTTCCACATTGCTTAGGGAGGGGAACAAATCACCATTTATAAGGGTGTGGAAACCTTTTCCTAGCAGACATGTTTTAAAGCCCTAAGGGGAAACTCGAAAGGGAAAGCCCAAAGAAGACAATATCTTTCCCTAGCAAACACGTTTTAAAGCCCTAAGAGGAAGCCCGAAAGGGAGAGCCCAAATAGGACAATATCTGCTAGAAGTGGATCTGGGGCATTACTAACAAACTAAAAGCTAATAGTATGTCTTTTCTTAAGGTTCTGAGCGCCAATCAAACTAATAGTATGTCTTTTCTTAAGGTTGGACATGTTTGAATTTCTTAATCACTCGATTATAAATATTTTTATTTATATAACTTTATTAAATGAGATGAAATGTATTTTCAGGTACTAAATTTGAAGGGGAAGATATTATTACTTAAAAGCAACTGAGAAGAGAAATAAATAAGGAAATATAATTATAAATTAATGTTTCTCGTTTCTTAATAATCATGGTCTGTTTGTAAAACTCTAAATTCTGTGTGTATTGTTCTGTGTTTCTTCTGTGTGTATTGTTCTGTGTTTCTTCTGTGTGTATTGTTCTGTGTTTCTTCTGTGTGTATTGTTTTGTGTTTCTGTTTAGTATGTTTAAGTCTGGTT

mRNA sequence

CAAGCCTAAAACCATGGAGAAGGAAGGCGTTCCCGTTCCCGTTCTTGTTGTTAAGGAGTCGAAGAAGACCACAACAACCAAGAAGGATGCACGATCAAAGAAGGAGAAGGATGAGAAGCCTAAAGAAGAAGACCACAAAGAAGACGCGAAGGTTCAAGCAGCATCGCTTGTCGCCACCACTGCCGCACCTGCGCTGGTCGAAGACAAAAATGCCACCGTCGAAGTAGCTGCTGTCGTGCCTAAGGAACTCACCTTCGAAGTAGCGGCTGTCCAGAATAAGAAACCCACCGTCGAGGCACCGGTAGCGGACGGAAAACCCGCCGTCGAGGCACCGGTAACGGCCGGGAAACCCGCCGTCGAGACACCGGTAGCGGCCGAGAAACCGACCGTGGAGGCACCGGTAGAGGCGAAGAAGCCCGCCGTCGAGGCACCGGTGGAGGCAAAGAAGCCCGCCGTCGAGGCACCGGTAGAGGCAAAGAAGCCCGCCGTCGAGGCACCAAAACAAACGAACCGAAAGATCAGATCTGAAACAGGGGCGGCGATGAAGAAATCTACGGCGGCGACGGGGGTGGCGATTCTGTGCTTCATCCTACTTTCTGCGGCAGCGATGACGGTTTCAGCCGACGCCGCAGACTGCATCGACGGCTGCTTCACCGCCTGTGTCCAGAAAGACATATGTTTAAGTCTGGTT

Coding sequence (CDS)

ATGGAGAAGGAAGGCGTTCCCGTTCCCGTTCTTGTTGTTAAGGAGTCGAAGAAGACCACAACAACCAAGAAGGATGCACGATCAAAGAAGGAGAAGGATGAGAAGCCTAAAGAAGAAGACCACAAAGAAGACGCGAAGGTTCAAGCAGCATCGCTTGTCGCCACCACTGCCGCACCTGCGCTGGTCGAAGACAAAAATGCCACCGTCGAAGTAGCTGCTGTCGTGCCTAAGGAACTCACCTTCGAAGTAGCGGCTGTCCAGAATAAGAAACCCACCGTCGAGGCACCGGTAGCGGACGGAAAACCCGCCGTCGAGGCACCGGTAACGGCCGGGAAACCCGCCGTCGAGACACCGGTAGCGGCCGAGAAACCGACCGTGGAGGCACCGGTAGAGGCGAAGAAGCCCGCCGTCGAGGCACCGGTGGAGGCAAAGAAGCCCGCCGTCGAGGCACCGGTAGAGGCAAAGAAGCCCGCCGTCGAGGCACCAAAACAAACGAACCGAAAGATCAGATCTGAAACAGGGGCGGCGATGAAGAAATCTACGGCGGCGACGGGGGTGGCGATTCTGTGCTTCATCCTACTTTCTGCGGCAGCGATGACGGTTTCAGCCGACGCCGCAGACTGCATCGACGGCTGCTTCACCGCCTGTGTCCAGAAAGACATATGTTTAAGTCTGGTT

Protein sequence

MEKEGVPVPVLVVKESKKTTTTKKDARSKKEKDEKPKEEDHKEDAKVQAASLVATTAAPALVEDKNATVEVAAVVPKELTFEVAAVQNKKPTVEAPVADGKPAVEAPVTAGKPAVETPVAAEKPTVEAPVEAKKPAVEAPVEAKKPAVEAPVEAKKPAVEAPKQTNRKIRSETGAAMKKSTAATGVAILCFILLSAAAMTVSADAADCIDGCFTACVQKDICLSLV
Homology
[Close]
BLAST of Cp4.1LG01g02060 vs. TrEMBL
Match: B4R7C7_DROSI (GD17435 OS=Drosophila simulans GN=Dsim\GD17435 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.3e-07
Identity = 44/97 (45.36%), Postives = 51/97 (52.58%), Query Frame = 1 

Query: 89  KKPTVEAPVADGKPAVEAPVTAGKPAVETPVAAEKPTVEAPVEAKKPAVEAPVEAKKPAV 148
           +KP  EAP    KPA EAP T  KPA E P   EKP  EAP   +KP  EAP   +KP  
Sbjct: 102 EKPATEAPGTTEKPATEAPGTTEKPATEAPGTTEKPVTEAPGTTEKPVTEAPGTTEKPVT 161

Query: 149 EAPVEAKKPAVEAPKQTNRKIRSETGAAMKKSTAATG 186
           EAP   +KPA +AP  T +      G   K +T A G
Sbjct: 162 EAPGTTEKPATDAPGTTEKPATDAPGTTEKPATDAPG 198

[Close]
BLAST of Cp4.1LG01g02060 vs. TrEMBL
Match: A0A0P6CKR7_9CRUS (Zinc finger CCHC domain-containing protein OS=Daphnia magna PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.3e-06
Identity = 36/79 (45.57%), Postives = 46/79 (58.23%), Query Frame = 1 

Query: 86  VQNKKPTVEAPVADGKPAVEAPVTAGKPAVETPVAAEKPTVEAPVEAKKPAVEAPVEAKK 145
           +Q K P  E P     PA E P+ A  PA ETP+  + P  E P++AK PA E P++AK 
Sbjct: 412 IQAKTPAKETPTQAKTPAKEPPIQAKPPAKETPIQVKTPAKETPIQAKTPAKENPIQAKN 471

Query: 146 PAVEAPVEAKKPAVEAPKQ 165
           PA E P++ K PA E P Q
Sbjct: 472 PAKETPIQPKTPAKETPNQ 490

[Close]
BLAST of Cp4.1LG01g02060 vs. TrEMBL
Match: A0A0N8APR7_9CRUS (Zinc finger CCHC domain-containing protein OS=Daphnia magna PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 7.0e-06
Identity = 39/90 (43.33%), Postives = 48/90 (53.33%), Query Frame = 1 

Query: 87  QNKKPTVEAPVADGKPAVEAPVTAGKPAVETPVAAEKPTVEAPVEAKKPAVEAPVEAKKP 146
           Q K P  E P     PA E P  A  PA ETP  A+ P  E P++AK PA E P++AK P
Sbjct: 375 QAKTPAKETPTHAKTPAKETPTHAKTPAKETPTHAKTPAKETPIQAKTPAKETPIQAKTP 434

Query: 147 AVEAPVEAKKPAVEAPKQTNRKIRSETGAA 177
           A E P++AK PA E P Q    ++     A
Sbjct: 435 AKETPIQAKTPAKETPIQAKTPVKGTPSQA 464

[Close]
BLAST of Cp4.1LG01g02060 vs. TrEMBL
Match: A0A0P5LQM6_9CRUS (Putative Zinc finger CCHC domain-containing protein (Fragment) OS=Daphnia magna PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 7.0e-06
Identity = 39/90 (43.33%), Postives = 48/90 (53.33%), Query Frame = 1 

Query: 87  QNKKPTVEAPVADGKPAVEAPVTAGKPAVETPVAAEKPTVEAPVEAKKPAVEAPVEAKKP 146
           Q K P  E P     PA E P  A  PA ETP  A+ P  E P++AK PA E P++AK P
Sbjct: 375 QAKTPAKETPTHAKTPAKETPTHAKTPAKETPTHAKTPAKETPIQAKTPAKETPIQAKTP 434

Query: 147 AVEAPVEAKKPAVEAPKQTNRKIRSETGAA 177
           A E P++AK PA E P Q    ++     A
Sbjct: 435 AKETPIQAKTPAKETPIQAKTPVKGTPSQA 464

[Close]
BLAST of Cp4.1LG01g02060 vs. TrEMBL
Match: A0A0P5Q699_9CRUS (Putative Zinc finger CCHC domain-containing protein OS=Daphnia magna PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 7.0e-06
Identity = 39/90 (43.33%), Postives = 48/90 (53.33%), Query Frame = 1 

Query: 87  QNKKPTVEAPVADGKPAVEAPVTAGKPAVETPVAAEKPTVEAPVEAKKPAVEAPVEAKKP 146
           Q K P  E P     PA E P  A  PA ETP  A+ P  E P++AK PA E P++AK P
Sbjct: 380 QAKTPAKETPTHAKTPAKETPTHAKTPAKETPTHAKTPAKETPIQAKTPAKETPIQAKTP 439

Query: 147 AVEAPVEAKKPAVEAPKQTNRKIRSETGAA 177
           A E P++AK PA E P Q    ++     A
Sbjct: 440 AKETPIQAKTPAKETPIQAKTPVKGTPSQA 469

[Close]
BLAST of Cp4.1LG01g02060 vs. NCBI nr
Match: gi|195567677|ref|XP_002107385.1| (uncharacterized protein Dsimw501_GD17435 [Drosophila simulans])

HSP 1 Score: 65.1 bits (157), Expect = 1.8e-07
Identity = 44/97 (45.36%), Postives = 51/97 (52.58%), Query Frame = 1 

Query: 89  KKPTVEAPVADGKPAVEAPVTAGKPAVETPVAAEKPTVEAPVEAKKPAVEAPVEAKKPAV 148
           +KP  EAP    KPA EAP T  KPA E P   EKP  EAP   +KP  EAP   +KP  
Sbjct: 102 EKPATEAPGTTEKPATEAPGTTEKPATEAPGTTEKPVTEAPGTTEKPVTEAPGTTEKPVT 161

Query: 149 EAPVEAKKPAVEAPKQTNRKIRSETGAAMKKSTAATG 186
           EAP   +KPA +AP  T +      G   K +T A G
Sbjct: 162 EAPGTTEKPATDAPGTTEKPATDAPGTTEKPATDAPG 198

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g02060 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g02060 vs. TrEMBL
Match NameE-valueIdentityDescription
B4R7C7_DROSI1.3e-0745.36GD17435 OS=Drosophila simulans GN=Dsim\GD17435 PE=4 SV=1[more]
A0A0P6CKR7_9CRUS5.3e-0645.57Zinc finger CCHC domain-containing protein OS=Daphnia magna PE=4 SV=1[more]
A0A0N8APR7_9CRUS7.0e-0643.33Zinc finger CCHC domain-containing protein OS=Daphnia magna PE=4 SV=1[more]
A0A0P5LQM6_9CRUS7.0e-0643.33Putative Zinc finger CCHC domain-containing protein (Fragment) OS=Daphnia magna ... [more]
A0A0P5Q699_9CRUS7.0e-0643.33Putative Zinc finger CCHC domain-containing protein OS=Daphnia magna PE=4 SV=1[more]
BLAST of Cp4.1LG01g02060 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g02060 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|195567677|ref|XP_002107385.1|1.8e-0745.36uncharacterized protein Dsimw501_GD17435 [Drosophila simulans][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g02060.1Cp4.1LG01g02060.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g02060CmaCh04G005060Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g02060CmoCh04G005440Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g02060CsaV3_3G018720Cucumber (Chinese Long) v3cpecucB0484
Cp4.1LG01g02060Carg08174Silver-seed gourdcarcpeB0527
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g02060Silver-seed gourdcarcpeB0927
Cp4.1LG01g02060Wax gourdcpewgoB0516
Cp4.1LG01g02060Wax gourdcpewgoB0517
Cp4.1LG01g02060Cucurbita pepo (Zucchini)cpecpeB234
Cp4.1LG01g02060Cucurbita maxima (Rimu)cmacpeB351
Cp4.1LG01g02060Cucurbita moschata (Rifu)cmocpeB311
Cp4.1LG01g02060Wild cucumber (PI 183967)cpecpiB388
Cp4.1LG01g02060Cucumber (Chinese Long) v2cpecuB389
Cp4.1LG01g02060Bottle gourd (USVL1VR-Ls)cpelsiB369
Cp4.1LG01g02060Watermelon (Charleston Gray)cpewcgB392
Cp4.1LG01g02060Watermelon (Charleston Gray)cpewcgB394
Cp4.1LG01g02060Watermelon (97103) v1cpewmB431
Cp4.1LG01g02060Watermelon (97103) v1cpewmB433
Cp4.1LG01g02060Melon (DHL92) v3.5.1cpemeB411
Cp4.1LG01g02060Melon (DHL92) v3.5.1cpemeB412
Cp4.1LG01g02060Cucumber (Gy14) v2cgybcpeB362
Cp4.1LG01g02060Melon (DHL92) v3.6.1cpemedB481