Carg08017 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg08017
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_050 : 210256 .. 210944 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCTAAACCCATTCAAGTTTTGAGCTTTATTTCCTCTGCAACCAGAAATTAATGGCTTCCCCAAGCGCCTTTGTTCCTTGGAAGGAGGTAGTCTTCTTCGCTTTGCTTCTTCTGGCTTTCAACGTTTCCGCTAGGGAACTTGTTGGAACCAACATTGTGGCTCGCACTGTCCGTAAGTCTCCTCTTTTTAATAATACCCATCTACCAATGTTGTTTTCACTTTACTTCTTGTTCTTTTTTAATAGATGAGATGACAATAGAGACGAATGTGGGCAGGAGATTGATTGCAAGACAGTTGGATACCTCTTGGGGAGGAAATTATTCTCCTCCTCCCCCTCGTCGTCGTCCTCCTCCGCCTCCTTGTCGTTATACTCCTCGTCCTTCTCTTCCTCGTTCTCGTCCCGGTTCCCGTCCTCTTCCTCCACGCTGATCCTCCAAGGGAAAAAATTTGAATTGTTTGTGTGTTTTATCTTTAATTCCCTTTGTTTTAGCATGTTTAGATTTGGAGGATAAGGATATTTATTTGGAGGATAAGGATATTTACAAGTAAAGTCCTATGAACTTTCTTTTTTCTTTAATGGTGTTGTGTGATTTTGGTCAAGCCATAGGCGCAAGCCCTCTGGAGTTAATGACTCATATCTTTCTAAACAATGTTAGTTCAATTATGAGAGCTCAAACTTTATAGAGT

mRNA sequence

TCTCTAAACCCATTCAAGTTTTGAGCTTTATTTCCTCTGCAACCAGAAATTAATGGCTTCCCCAAGCGCCTTTGTTCCTTGGAAGGAGGTAGTCTTCTTCGCTTTGCTTCTTCTGGCTTTCAACGTTTCCGCTAGGGAACTTGTTGGAACCAACATTGTGGCTCGCACTGTCCATGAGATGACAATAGAGACGAATGTGGGCAGGAGATTGATTGCAAGACAGTTGGATACCTCTTGGGGAGGAAATTATTCTCCTCCTCCCCCTCGTCGTCGTCCTCCTCCGCCTCCTTGTCGTTATACTCCTCGTCCTTCTCTTCCTCGTTCTCGTCCCGGTTCCCGTCCTCTTCCTCCACGCTGATCCTCCAAGGGAAAAAATTTGAATTGTTTGTGTGTTTTATCTTTAATTCCCTTTGTTTTAGCATGTTTAGATTTGGAGGATAAGGATATTTATTTGGAGGATAAGGATATTTACAAGTAAAGTCCTATGAACTTTCTTTTTTCTTTAATGGTGTTGTGTGATTTTGGTCAAGCCATAGGCGCAAGCCCTCTGGAGTTAATGACTCATATCTTTCTAAACAATGTTAGTTCAATTATGAGAGCTCAAACTTTATAGAGT

Coding sequence (CDS)

ATGGCTTCCCCAAGCGCCTTTGTTCCTTGGAAGGAGGTAGTCTTCTTCGCTTTGCTTCTTCTGGCTTTCAACGTTTCCGCTAGGGAACTTGTTGGAACCAACATTGTGGCTCGCACTGTCCATGAGATGACAATAGAGACGAATGTGGGCAGGAGATTGATTGCAAGACAGTTGGATACCTCTTGGGGAGGAAATTATTCTCCTCCTCCCCCTCGTCGTCGTCCTCCTCCGCCTCCTTGTCGTTATACTCCTCGTCCTTCTCTTCCTCGTTCTCGTCCCGGTTCCCGTCCTCTTCCTCCACGCTGA

Protein sequence

MASPSAFVPWKEVVFFALLLLAFNVSARELVGTNIVARTVHEMTIETNVGRRLIARQLDTSWGGNYSPPPPRRRPPPPPCRYTPRPSLPRSRPGSRPLPPR

Homology

[Close]

BLAST of Carg08017 vs. NCBI nr
Match: KGN57260.1 (hypothetical protein Csa_3G175610 [Cucumis sativus])

HSP 1 Score: 55.5 bits (132), Expect = 1.3e-04
Identity = 43/91 (47.25%), Postives = 49/91 (53.85%), Query Frame = 0


Query: 6  AFVPWKEV-VFFALLLLAFNVSARELVGTNIVARTVHE--MTIETN--VGRRLIARQLDT 65
          A V WK+V +FF LLLLA+N+SAREL     VART  E  +T E N  + RRL  RQLDT
Sbjct: 7  ASVAWKKVIIFFTLLLLAYNISAREL-----VARTTCEPSLTTEMNDVIDRRLFVRQLDT 66

Query: 66 SWGGXXXXXXXXXXXXXXXCRYTPRPSLPRS 92
          SW G                 Y P P  PRS
Sbjct: 67 SWRG----------------NYFPPPKPPRS 76

[Close]

BLAST of Carg08017 vs. TrEMBL
Match: tr|A0A0A0L5K7|A0A0A0L5K7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175610 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 8.3e-05
Identity = 43/91 (47.25%), Postives = 49/91 (53.85%), Query Frame = 0


Query: 6  AFVPWKEV-VFFALLLLAFNVSARELVGTNIVARTVHE--MTIETN--VGRRLIARQLDT 65
          A V WK+V +FF LLLLA+N+SAREL     VART  E  +T E N  + RRL  RQLDT
Sbjct: 7  ASVAWKKVIIFFTLLLLAYNISAREL-----VARTTCEPSLTTEMNDVIDRRLFVRQLDT 66

Query: 66 SWGGXXXXXXXXXXXXXXXCRYTPRPSLPRS 92
          SW G                 Y P P  PRS
Sbjct: 67 SWRG----------------NYFPPPKPPRS 76

The following BLAST results are available for this feature:

BLAST of Carg08017 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57260.1	1.3e-04	47.25	hypothetical protein Csa_3G175610 [Cucumis sativus]	[more]

BLAST of Carg08017 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg08017 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg08017 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L5K7\|A0A0A0L5K7_CUCSA	8.3e-05	47.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175610 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08017-RA	Carg08017-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..101
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..101

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg08017	Cla006276	Watermelon (97103) v1	carwmB0373
Carg08017	Csa3G175610	Cucumber (Chinese Long) v2	carcuB0401
Carg08017	ClCG05G007320	Watermelon (Charleston Gray)	carwcgB0372
Carg08017	CSPI03G15870	Wild cucumber (PI 183967)	carcpiB0406
Carg08017	CmaCh04G003410	Cucurbita maxima (Rimu)	carcmaB0529
Carg08017	CmoCh04G003590	Cucurbita moschata (Rifu)	carcmoB0514
Carg08017	CmoCh16G002100	Cucurbita moschata (Rifu)	carcmoB0509
Carg08017	Lsi05G013300	Bottle gourd (USVL1VR-Ls)	carlsiB345
Carg08017	Cp4.1LG01g03830	Cucurbita pepo (Zucchini)	carcpeB0527
Carg08017	Cp4.1LG14g05550	Cucurbita pepo (Zucchini)	carcpeB0523
Carg08017	CsGy3G015970	Cucumber (Gy14) v2	carcgybB0381
Carg08017	MELO3C031780.2	Melon (DHL92) v3.6.1	carmedB0385
Carg08017	CsaV3_3G016080	Cucumber (Chinese Long) v3	carcucB0404
Carg08017	Bhi01G000888	Wax gourd	carwgoB0461

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg08017	Carg16743	Silver-seed gourd	carcarB406

The following block(s) are covering this gene:


Gene	Organism	Block
Carg08017	Watermelon (97103) v2	carwmbB0398
Carg08017	Cucumber (Gy14) v1	carcgyB0437
Carg08017	Cucurbita maxima (Rimu)	carcmaB0526
Carg08017	Melon (DHL92) v3.5.1	carmeB0381