CmaCh04G003410 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G003410
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr04 : 1672944 .. 1675790 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGTCCCTGAAGATGATTTCCTTTGTGTTGAAGCTCCTAGTTTGCTTTGCATTGCTTCTGATTGCCTCGCCCATTTCTGCAATGGACAATACTCCTCGTATTCGTAAGACTCTTTTTCTTCACGTGTTCAAGAAGTTCTACATTAAGAATTCTTATAAAATTTCTAGTTATCTAACTCTTAGAACTATTTTCAAAATTTAAGTTAAGTTTTGAAAACTAAAACCAAATAGTTGTCAGATGTAGTCTACATTTAGGAGTAGTGTACATTTAGGAGTAGTGTGTTTGTAACTCTTTCATGCAGGTAGGTTCCCACTATATTAATTGTGTAAGTGAAGTGGGTGCTAAGTGGGTGTTTAGATATCTCAACATGTTAAAGTTGATAGTGGACGGACCTAAAAGCAAGAGTATGGTCGAAGCCATTGATCATGGGTCAATGACGAGCTGAGCTATATATTTCTAGTGGCCAGCCCGTGGCGGCAGAAAACAAACTTGAGTTAAAATAAGAAATATACCCATGAATGGATACATTATCTTACCTTTCTCTTCAAATAAATGCCAATCAAAGTTAACTTTGTTTATGACGAAGTGTGGCTTTAATTACCCCATTTCAGCTCTTACACATGCTACTACGATGGTAGCAGCAGGAATTTTTCTTGTCGCTCGGCTTCTTCCGCTTTTTATAGTAATACCTTACATCTGGTGGTACGGGTTTCAGGTAAGATGGGGATGGAGTACAAGCTTGTTGGAAAGGCTGTGGTGGTAGCAAAACCAGTGAGACAATTGTCTGCTGATTCCCCATGGGGTGGTGGTTATCACATCCCTTAGTTGATGACATTACTTTTCAACTGCTTTCAGCTGTGCCTTTTTCCTTTGTGTTTATAGGCTTTTTGGGAGAATCAATCTTAAATAAAGCTACAAATGTATTTGTACGACTCTTTTCAAATACTTTGGTTTTGCCTCAATGTTCAAGCTCTTCCTTTCTTGATTGGGTATCACTAAGTTTCTTTCGCTTACTTTTTAGTTTAGAGATATGAGGTAACTGGATGGTTGCTTCGGCTAACACAAACTGATAAAGACGAGTGGTAGGTAGCAAACAGTTACAGAGATGGGTTCACTTGGCCTCCAAGTTCCAACCTCGCTTTTGTATTCCACATGGAAACAAATTAAAGTTGCATCCTTCTACATGTGTTGAAGTGGAGATCTATAATCATCGCTGAGCCTTGTAGAATGGGCTTGTAACCAAAGTGGGAAGCTTTAAAGTGCTTGAAGGTTGGTTCTTCTTATTGGGTTGGGTTCTGTGGAAGACGACCACTGGCTGTTATGGGGAAAGTTTAAGCTGCCAAGTCTCATTCATCTTGAGTCTTTGCTCCTGTAAAATTAGCAGCTTTACCGAGTGAAAGAGTGAAATCAGTCTCATGCCAAACATCATAAATCAGATCAGAGTCACCCTATTAAGTCATAAGTCAGAAAAAGAGGAAGGGAAGGAGTGGATTCTCTCTTACTGTATGTGTATGAGTATGATCAACAATCAAGCCATAACAGAAATGATAATCAGGTCTTCCACCAATCATACAAAAGCAGCTTCAGTAGCCTAATATCAGCACAAGTGGGCGTAAGCGTTTACCTTTACCCGTTTAATCAATCCCTGGGATACTAGGTCCACTCTTTAGCACACCATAAGATCGGATATATATTAGGGCTTTAGCCCGAGGGAGAAGGGGTCCCAGATCGATTGTACAGTGTTCTTGCTCTCGAGTATGTCAACCAGTAGTTTTAGGAAATGGGGTTATTTCGAGTAATATTATAGGCTACAAGCCATAGATAGCAACATTGATAGCGTATAACTCGAGTAGGAAAAATTGACAACTAGTCACAACTCCTAAATACATTTTGAGGCATTTAAACCTGACTTTATCAAGCGGTCATACACCCATAAATTATAATAATAAAATAATAAAAAACTAGATAACATGAAAACGAGTAGAAAGAGTTCGAAACAGAATATGTAGCTATATACTACATGTCTTGGACAAACATGATCGTAAATATGTAACCATATGCAACACACCTGGAACAAGTAATGACCGTGACATTAGCCCTTAGATCGGAGGGAACTGTACGAGACTGTGGAGGGCTTTACTGAGCAGCGTCACCTCTGCTCCATTAGATGGAAGGATAGTGTTGACGGGTTCTTTCTAGCCCAATAGTGCCTCGACAGTCACTTTTTATATAAAAGTGAGGTAATTTTATGAACGAAAAGATATCAGCGACCAGACTTCATTGACTAATACAAGTTGATGCCCATTAGCCAAAAGTCTTCTCGATTACCTTTTTCTATGTTTTTTACCTTGAAAGTGCAGCCCTCCCCACATGTCTATTGGGTTAGTTAATATGTATTAATACATCACCAAAATCTCTCTAAACCCATTCAAGTTTTGAGCTTTATTTCCTCTGCAACCAGAAATTAATGGCTTCCCCAAGCGCCTTTGTTCCTTGGAAGGAGGTAGTCTTCTTCGCTTTGCTTCTTCTGGCTTTCAACGTTTCCGCTAGGGAACTTGTTGGAACCAACATTGTGGCTGCACCGTAAGTCTCCTCTTTTTAATAATACCCATCCACCAATGTTGTTTTCACTTTACTTCTTGTTCTTTTTTAATAGGTGAGATGACAATAGAGACGAATGTGGGCAGGAGATTGATTGCAAGACAGTTGGATACCTCTTGGGGAGGAAATTATTCTCCTCCTCCCCCTCGTCGTCCTCCTCCTCCGCCTCCTCCTTGTCGTTATACTCCCCGTCCTTCTCTTCCTCGTTCTCGTCCTGGTTCCCGTCCTCTTCCTCCACGCTGA

mRNA sequence

ATGGTGTCCCTGAAGATGATTTCCTTTGTGTTGAAGCTCCTAGTTTGCTTTGCATTGCTTCTGATTGCCTCGCCCATTTCTGCAATGGACAATACTCCTCGTATTCGTAAGATGGGGATGGAGTACAAGCTTGTTGGAAAGGCTGTGGTGGTAGCAAAACCAGTGAGACAATTGTCTGCTGATTCCCCATGGGGTGGTGGGAACTTGTTGGAACCAACATTGTGGCTGCACCGTGAGATGACAATAGAGACGAATGTGGGCAGGAGATTGATTGCAAGACAGTTGGATACCTCTTGGGGAGGAAATTATTCTCCTCCTCCCCCTCGTCGTCCTCCTCCTCCGCCTCCTCCTTGTCGTTATACTCCCCGTCCTTCTCTTCCTCGTTCTCGTCCTGGTTCCCGTCCTCTTCCTCCACGCTGA

Coding sequence (CDS)

ATGGTGTCCCTGAAGATGATTTCCTTTGTGTTGAAGCTCCTAGTTTGCTTTGCATTGCTTCTGATTGCCTCGCCCATTTCTGCAATGGACAATACTCCTCGTATTCGTAAGATGGGGATGGAGTACAAGCTTGTTGGAAAGGCTGTGGTGGTAGCAAAACCAGTGAGACAATTGTCTGCTGATTCCCCATGGGGTGGTGGGAACTTGTTGGAACCAACATTGTGGCTGCACCGTGAGATGACAATAGAGACGAATGTGGGCAGGAGATTGATTGCAAGACAGTTGGATACCTCTTGGGGAGGAAATTATTCTCCTCCTCCCCCTCGTCGTCCTCCTCCTCCGCCTCCTCCTTGTCGTTATACTCCCCGTCCTTCTCTTCCTCGTTCTCGTCCTGGTTCCCGTCCTCTTCCTCCACGCTGA

Protein sequence

MVSLKMISFVLKLLVCFALLLIASPISAMDNTPRIRKMGMEYKLVGKAVVVAKPVRQLSADSPWGGGNLLEPTLWLHREMTIETNVGRRLIARQLDTSWGGNYSPPPPRRPPPPPPPCRYTPRPSLPRSRPGSRPLPPR
Homology
[Close]
BLAST of CmaCh04G003410 vs. TrEMBL
Match: A0A0A0LB11_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G175620 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.9e-06
Identity = 38/57 (66.67%), Postives = 41/57 (71.93%), Query Frame = 1 

Query: 78  REMT-IETN--VGRRLIARQLDTSWGGNYSPPPPRRPPPPPPPCRYTPRPSLPRSRP 132
           REM  +ETN  +GR+L ARQLDTSW GNYSPPPP R PPPPPP R  PRP     RP
Sbjct: 29  REMVAVETNWEMGRKLTARQLDTSWKGNYSPPPPNR-PPPPPPYRQLPRPRPCYRRP 84

[Close]
BLAST of CmaCh04G003410 vs. NCBI nr
Match: gi|700202128|gb|KGN57261.1| (hypothetical protein Csa_3G175620 [Cucumis sativus])

HSP 1 Score: 60.5 bits (145), Expect = 2.8e-06
Identity = 38/57 (66.67%), Postives = 41/57 (71.93%), Query Frame = 1 

Query: 78  REMT-IETN--VGRRLIARQLDTSWGGNYSPPPPRRPPPPPPPCRYTPRPSLPRSRP 132
           REM  +ETN  +GR+L ARQLDTSW GNYSPPPP R PPPPPP R  PRP     RP
Sbjct: 29  REMVAVETNWEMGRKLTARQLDTSWKGNYSPPPPNR-PPPPPPYRQLPRPRPCYRRP 84

The following BLAST results are available for this feature:
BLAST of CmaCh04G003410 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh04G003410 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LB11_CUCSA1.9e-0666.67Uncharacterized protein OS=Cucumis sativus GN=Csa_3G175620 PE=4 SV=1[more]
BLAST of CmaCh04G003410 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh04G003410 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202128|gb|KGN57261.1|2.8e-0666.67hypothetical protein Csa_3G175620 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G003410.1CmaCh04G003410.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh04G003410Cla006275Watermelon (97103) v1cmawmB707
CmaCh04G003410ClCG05G007330Watermelon (Charleston Gray)cmawcgB663
CmaCh04G003410CmoCh04G003580Cucurbita moschata (Rifu)cmacmoB728
CmaCh04G003410Cla97C05G089080Watermelon (97103) v2cmawmbB767
CmaCh04G003410Carg08017Silver-seed gourdcarcmaB0529
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh04G003410Wax gourdcmawgoB0856
CmaCh04G003410Cucurbita maxima (Rimu)cmacmaB351
CmaCh04G003410Cucumber (Gy14) v1cgycmaB0722
CmaCh04G003410Cucurbita moschata (Rifu)cmacmoB701
CmaCh04G003410Wild cucumber (PI 183967)cmacpiB712
CmaCh04G003410Cucumber (Chinese Long) v2cmacuB703
CmaCh04G003410Melon (DHL92) v3.5.1cmameB692
CmaCh04G003410Cucurbita pepo (Zucchini)cmacpeB715
CmaCh04G003410Cucurbita pepo (Zucchini)cmacpeB720
CmaCh04G003410Bottle gourd (USVL1VR-Ls)cmalsiB688
CmaCh04G003410Cucumber (Gy14) v2cgybcmaB417
CmaCh04G003410Melon (DHL92) v3.6.1cmamedB779
CmaCh04G003410Silver-seed gourdcarcmaB1209
CmaCh04G003410Cucumber (Chinese Long) v3cmacucB0838