Cla97C05G089080 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C05G089080
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Unknown protein
Location	Cla97Chr05 : 7308978 .. 7309462 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCCCTCAAGATTTTGCTTGTGTTTAAGCTCTTAGTTTTCTTTGCCTTGCTTCTCACTACCTCTCCTATTTCTGCCACTAACAATGCTCCTCCTATTCGTAAGTTGTCTTTTTCCCTTATCGTCTCATGTTTCCTGACTATAACTCTTTTTTTCTATGAGTTTGATGTAAACTTGAATTCAAATAAATTTGTAGTTTGTTATATGTAGTAATTTCATTGTTAAAATAAGAAACTAGCTACACATGAATAAAAATGAAAAAAAAAAAATGTTCATGAAATCACTACTTTTCTGATTTCTCTTCAAATTAAAAGAGTATGTCAACCAAGTTAATGTGGGGTTTTAATTTTGATATTTAGTATGGAATTTCAGGGAAGATGGGTGTGGAGTACAAAAATGTTGGGAAGAATGTGGTGGTAGCAGAACCAAAGAGACCACTTTTTGCTGATGCCCCTTGGGGGGGTGGTTATATCAACCCTTGA

mRNA sequence

ATGGCGTCCCTCAAGATTTTGCTTGTGTTTAAGCTCTTAGTTTTCTTTGCCTTGCTTCTCACTACCTCTCCTATTTCTGCCACTAACAATGCTCCTCCTATTCGGAAGATGGGTGTGGAGTACAAAAATGTTGGGAAGAATGTGGTGGTAGCAGAACCAAAGAGACCACTTTTTGCTGATGCCCCTTGGGGGGGTGGTTATATCAACCCTTGA

Coding sequence (CDS)

ATGGCGTCCCTCAAGATTTTGCTTGTGTTTAAGCTCTTAGTTTTCTTTGCCTTGCTTCTCACTACCTCTCCTATTTCTGCCACTAACAATGCTCCTCCTATTCGGAAGATGGGTGTGGAGTACAAAAATGTTGGGAAGAATGTGGTGGTAGCAGAACCAAAGAGACCACTTTTTGCTGATGCCCCTTGGGGGGGTGGTTATATCAACCCTTGA

Protein sequence

MASLKILLVFKLLVFFALLLTTSPISATNNAPPIRKMGVEYKNVGKNVVVAEPKRPLFADAPWGGGYINP

Homology

[Close]

BLAST of Cla97C05G089080 vs. NCBI nr
Match: KGN57259.1 (hypothetical protein Csa_3G175600 [Cucumis sativus])

HSP 1 Score: 57.8 bits (138), Expect = 1.7e-05
Identity = 36/71 (50.70%), Postives = 44/71 (61.97%), Query Frame = 0


Query: 4  LKILLVFKLLVFFALL-LTTSPISATNN-----APPIRKMGVEYKNVGKNVVVAEPKRPL 63
          +KI L+ KLL F  LL +  + ISATNN      PPIRKM V Y+   K VVV +  +P 
Sbjct: 6  MKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVGYRKGEKAVVVPKVYKPT 65

Query: 64 FADAPWGGGYI 69
           AD PWGGGY+
Sbjct: 66 SADFPWGGGYV 76

[Close]

BLAST of Cla97C05G089080 vs. NCBI nr
Match: XP_022141390.1 (uncharacterized protein LOC111011803 [Momordica charantia])

HSP 1 Score: 52.0 bits (123), Expect = 9.6e-04
Identity = 36/74 (48.65%), Postives = 46/74 (62.16%), Query Frame = 0


Query: 1   MASLKILLVFKLLVFFALLLTTSPISAT----NNAPPIRKMGVEYKNVGKNVVVAEPKRP 60
           MASL+I  V KL  FFALLL  S +SA+    +  P IRK+G+EY++VGK V+ A   + 
Sbjct: 42  MASLRISFVLKLF-FFALLLIASRVSASTPSIHKRPRIRKLGMEYRSVGKAVLRA---KA 101

Query: 61  LFADAPWGGGYINP 71
              D PW GGY  P
Sbjct: 102 ASYDFPWKGGYNPP 111

[Close]

BLAST of Cla97C05G089080 vs. TrEMBL
Match: tr|A0A0A0L8B2|A0A0A0L8B2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175600 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.2e-05
Identity = 36/71 (50.70%), Postives = 44/71 (61.97%), Query Frame = 0


Query: 4  LKILLVFKLLVFFALL-LTTSPISATNN-----APPIRKMGVEYKNVGKNVVVAEPKRPL 63
          +KI L+ KLL F  LL +  + ISATNN      PPIRKM V Y+   K VVV +  +P 
Sbjct: 6  MKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVGYRKGEKAVVVPKVYKPT 65

Query: 64 FADAPWGGGYI 69
           AD PWGGGY+
Sbjct: 66 SADFPWGGGYV 76

The following BLAST results are available for this feature:

BLAST of Cla97C05G089080 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57259.1	1.7e-05	50.70	hypothetical protein Csa_3G175600 [Cucumis sativus]	[more]
XP_022141390.1	9.6e-04	48.65	uncharacterized protein LOC111011803 [Momordica charantia]	[more]

BLAST of Cla97C05G089080 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L8B2\|A0A0A0L8B2_CUCSA	1.2e-05	50.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175600 PE=4 SV=1	[more]

BLAST of Cla97C05G089080 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C05G089080 vs. TAIR10


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C05G089080.1	Cla97C05G089080.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C05G089080	Cla006275	Watermelon (97103) v1	wmwmbB206
Cla97C05G089080	ClCG05G007330	Watermelon (Charleston Gray)	wcgwmbB229
Cla97C05G089080	CmaCh04G003410	Cucurbita maxima (Rimu)	cmawmbB767
Cla97C05G089080	CmoCh04G003580	Cucurbita moschata (Rifu)	cmowmbB739
Cla97C05G089080	Lsi05G013290	Bottle gourd (USVL1VR-Ls)	lsiwmbB334
Cla97C05G089080	Carg08016	Silver-seed gourd	carwmbB0398

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C05G089080	Wax gourd	wgowmbB178
Cla97C05G089080	Silver-seed gourd	carwmbB0910
Cla97C05G089080	Cucumber (Gy14) v2	cgybwmbB196
Cla97C05G089080	Cucumber (Gy14) v1	cgywmbB452
Cla97C05G089080	Cucurbita maxima (Rimu)	cmawmbB346
Cla97C05G089080	Cucurbita moschata (Rifu)	cmowmbB331
Cla97C05G089080	Wild cucumber (PI 183967)	cpiwmbB209
Cla97C05G089080	Cucumber (Chinese Long) v3	cucwmbB206
Cla97C05G089080	Cucumber (Chinese Long) v2	cuwmbB204
Cla97C05G089080	Melon (DHL92) v3.6.1	medwmbB423
Cla97C05G089080	Melon (DHL92) v3.5.1	mewmbB434