ClCG05G007330 (gene) Watermelon (Charleston Gray)

Overview
NameClCG05G007330
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr05 : 7670093 .. 7670577 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTCCCTCAAGATTTTGCTTGTGTTTAAGCTCTTAGTTTTCTTTGCCTTGCTTCTCACTACCTCTCCTATTTCTGCCACTAACAATGCTCCTCCTATTCGTAAGTTGTCTTTTTCCCTTATCGTCTCATGTTTCCTGACTATAACTCTTTTTTTCTATGAGTTTGATGTAAACTTGAATTCAAATAAATTTGTAGTTTGTTATATGTAGTAATTTCATTGTTAAAATAAGAAACTAGCTACACATGAATAAAAATGAAAAAAAAAAAATGTTCATGAAATCACTACTTTTCTGATTTCTCTTCAAATTAAAAGAGTATGTCAACCAAGTTAATGTGGGGTTTTAATTTTGATATTTAGTATGGAATTTCAGGGAAGATGGGTGTGGAGTACAAAAATGTTGGGAAGAATGTGGTGGTAGCAGAACCAAAGAGACCACTTTTTGCTGATGCCCCTTGGGGGGGTGGTTATATCAACCCTTGA

mRNA sequence

ATGGCGTCCCTCAAGATTTTGCTTGTGTTTAAGCTCTTAGTTTTCTTTGCCTTGCTTCTCACTACCTCTCCTATTTCTGCCACTAACAATGCTCCTCCTATTCGGAAGATGGGTGTGGAGTACAAAAATGTTGGGAAGAATGTGGTGGTAGCAGAACCAAAGAGACCACTTTTTGCTGATGCCCCTTGGGGGGGTGGTTATATCAACCCTTGA

Coding sequence (CDS)

ATGGCGTCCCTCAAGATTTTGCTTGTGTTTAAGCTCTTAGTTTTCTTTGCCTTGCTTCTCACTACCTCTCCTATTTCTGCCACTAACAATGCTCCTCCTATTCGGAAGATGGGTGTGGAGTACAAAAATGTTGGGAAGAATGTGGTGGTAGCAGAACCAAAGAGACCACTTTTTGCTGATGCCCCTTGGGGGGGTGGTTATATCAACCCTTGA

Protein sequence

MASLKILLVFKLLVFFALLLTTSPISATNNAPPIRKMGVEYKNVGKNVVVAEPKRPLFADAPWGGGYINP
Homology
[Close]
BLAST of ClCG05G007330 vs. TrEMBL
Match: A0A0A0L8B2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G175600 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 4.3e-07
Identity = 36/71 (50.70%), Postives = 44/71 (61.97%), Query Frame = 1 

Query: 4  LKILLVFKLLVFFALL-LTTSPISATNNAP-----PIRKMGVEYKNVGKNVVVAEPKRPL 63
          +KI L+ KLL F  LL +  + ISATNN P     PIRKM V Y+   K VVV +  +P 
Sbjct: 6  MKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVGYRKGEKAVVVPKVYKPT 65

Query: 64 FADAPWGGGYI 69
           AD PWGGGY+
Sbjct: 66 SADFPWGGGYV 76

[Close]
BLAST of ClCG05G007330 vs. NCBI nr
Match: gi|700202126|gb|KGN57259.1| (hypothetical protein Csa_3G175600 [Cucumis sativus])

HSP 1 Score: 61.6 bits (148), Expect = 6.2e-07
Identity = 36/71 (50.70%), Postives = 44/71 (61.97%), Query Frame = 1 

Query: 4  LKILLVFKLLVFFALL-LTTSPISATNNAP-----PIRKMGVEYKNVGKNVVVAEPKRPL 63
          +KI L+ KLL F  LL +  + ISATNN P     PIRKM V Y+   K VVV +  +P 
Sbjct: 6  MKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVGYRKGEKAVVVPKVYKPT 65

Query: 64 FADAPWGGGYI 69
           AD PWGGGY+
Sbjct: 66 SADFPWGGGYV 76

The following BLAST results are available for this feature:
BLAST of ClCG05G007330 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L8B2_CUCSA4.3e-0750.70Uncharacterized protein OS=Cucumis sativus GN=Csa_3G175600 PE=4 SV=1[more]
BLAST of ClCG05G007330 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202126|gb|KGN57259.1|6.2e-0750.70hypothetical protein Csa_3G175600 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG05G007330.1ClCG05G007330.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG05G007330Cla006275Watermelon (97103) v1wcgwmB286
ClCG05G007330Cla97C05G089080Watermelon (97103) v2wcgwmbB229
ClCG05G007330CmaCh04G003410Cucurbita maxima (Rimu)cmawcgB663
ClCG05G007330CmoCh04G003580Cucurbita moschata (Rifu)cmowcgB664
ClCG05G007330Lsi05G013290Bottle gourd (USVL1VR-Ls)lsiwcgB336
ClCG05G007330Carg08016Silver-seed gourdcarwcgB0372
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG05G007330Wax gourdwcgwgoB426
ClCG05G007330Cucumber (Gy14) v1cgywcgB451
ClCG05G007330Cucurbita maxima (Rimu)cmawcgB296
ClCG05G007330Cucurbita moschata (Rifu)cmowcgB290
ClCG05G007330Wild cucumber (PI 183967)cpiwcgB226
ClCG05G007330Cucumber (Chinese Long) v2cuwcgB222
ClCG05G007330Melon (DHL92) v3.5.1mewcgB427
ClCG05G007330Cucurbita pepo (Zucchini)cpewcgB207
ClCG05G007330Cucurbita pepo (Zucchini)cpewcgB399
ClCG05G007330Cucumber (Gy14) v2cgybwcgB203
ClCG05G007330Melon (DHL92) v3.6.1medwcgB416
ClCG05G007330Silver-seed gourdcarwcgB0847
ClCG05G007330Cucumber (Chinese Long) v3cucwcgB225