CSPI03G15870 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI03G15870
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr3 : 11891505 .. 11892270 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTGAAGCCCTCCCACTTGGTTTATTGGGTTAATTAAATTAGTTAATAAATACTCACAATCACCAAACTTCCTCTAATTCTACCCTAACTCATCCTCCTTTGTAAGCCTTTTACAATCACAAACTAATGGCTACAGCAACAATAGCTTCGGTTGCTTGGAAGAAAGTTATTATCTTCTTTACTTTGCTTCTTCTTGCTTACAACATTTCGGCGAGAGAACTTGTTGCTCGCACCACCTGTAAGTCTTTTTCTCTTTCCATAATACCCTTATGATAATATTAGTATCTCAGCTTAAACTTTTGAGTTTGATTGGTGATTTAACTGATTCCGCCAGAAACTCTTTTACGTCTCTTGTTTTTGGTTAATAGGTGAGCCATCGTTGACGACAGAGATGAATGATGTAATAGACCGGAGATTATTTGTTCGGCAATTGGATACCTCTTGGAGAGGAAATTATTTTCCTCCTCCTAAACCGCCAAGGTCTTGATTTGAACATGAGATGTTAATTTTATTTTTAATTACCCTTCCTTGATCTCTGTTTTGGGGACGAGGATCTACCACAAGTTGTATGAATAGTTATTTTCCCTTGTAAGGATGTGGCCATTTAATGGCGTTGTGTGTGATTGTGGTGGAGTTTAACTACAGCCACAAATACTTTTTAATGTTAAATTCAGTAGTCGTAATGTAATAAACAGTTAACCCAAAGTTTAATAACATACTTTTGATTTATTGATCCTTTATAATGTGTGATACAGCGTACAATTTCG

mRNA sequence

ATGGCTACAGCAACAATAGCTTCGGTTGCTTGGAAGAAAGTTATTATCTTCTTTACTTTGCTTCTTCTTGCTTACAACATTTCGGCGAGAGAACTTGTTGCTCGCACCACCTGTGAGCCATCGTTGACGACAGAGATGAATGATGTAATAGACCGGAGATTATTTGTTCGGCAATTGGATACCTCTTGGAGAGGAAATTATTTTCCTCCTCCTAAACCGCCAAGGTCTTGA

Coding sequence (CDS)

ATGGCTACAGCAACAATAGCTTCGGTTGCTTGGAAGAAAGTTATTATCTTCTTTACTTTGCTTCTTCTTGCTTACAACATTTCGGCGAGAGAACTTGTTGCTCGCACCACCTGTGAGCCATCGTTGACGACAGAGATGAATGATGTAATAGACCGGAGATTATTTGTTCGGCAATTGGATACCTCTTGGAGAGGAAATTATTTTCCTCCTCCTAAACCGCCAAGGTCTTGA
Homology
[Close]
BLAST of CSPI03G15870 vs. TrEMBL
Match: A0A0A0L5K7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G175610 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 1.2e-34
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1 

Query: 1  MATATIASVAWKKVIIFFTLLLLAYNISARELVARTTCEPSLTTEMNDVIDRRLFVRQLD 60
          MATATIASVAWKKVIIFFTLLLLAYNISARELVARTTCEPSLTTEMNDVIDRRLFVRQLD
Sbjct: 1  MATATIASVAWKKVIIFFTLLLLAYNISARELVARTTCEPSLTTEMNDVIDRRLFVRQLD 60

Query: 61 TSWRGNYFPPPKPPRS 77
          TSWRGNYFPPPKPPRS
Sbjct: 61 TSWRGNYFPPPKPPRS 76

[Close]
BLAST of CSPI03G15870 vs. NCBI nr
Match: gi|700202127|gb|KGN57260.1| (hypothetical protein Csa_3G175610 [Cucumis sativus])

HSP 1 Score: 153.3 bits (386), Expect = 1.7e-34
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1 

Query: 1  MATATIASVAWKKVIIFFTLLLLAYNISARELVARTTCEPSLTTEMNDVIDRRLFVRQLD 60
          MATATIASVAWKKVIIFFTLLLLAYNISARELVARTTCEPSLTTEMNDVIDRRLFVRQLD
Sbjct: 1  MATATIASVAWKKVIIFFTLLLLAYNISARELVARTTCEPSLTTEMNDVIDRRLFVRQLD 60

Query: 61 TSWRGNYFPPPKPPRS 77
          TSWRGNYFPPPKPPRS
Sbjct: 61 TSWRGNYFPPPKPPRS 76

The following BLAST results are available for this feature:
BLAST of CSPI03G15870 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI03G15870 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L5K7_CUCSA1.2e-34100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G175610 PE=4 SV=1[more]
BLAST of CSPI03G15870 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI03G15870 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202127|gb|KGN57260.1|1.7e-34100.00hypothetical protein Csa_3G175610 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G15870.1CSPI03G15870.1mRNA