Cla006276 (gene) Watermelon (97103) v1

Overview
NameCla006276
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr5 : 7336946 .. 7337285 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCAACAACTTTGGTTGCTTGGGAGAAGGTTATCTTCTTTGCTTTGCTTCTTCTTGCTTTCAATGTTTCGGCGAGAGAATTCGTCGCTTGCACAGCCCGTAAGTCTTTCTTTTTCCATGATATCTTTCTAACAATATTGTTTTATAAATTTACTACAACCTATAACGTCGGAAGTATCAATTTAAACTTTTGAGTTGATAGGCGAGTCGTTGTTGGTGACGAAGACGAATGGTGTGATGGGCAGGAGATTAATTGTTCGACAGCTGGATATCCCTAGGAAAGGAAATTATTCTCCTCCTCCTCCTCGTCGTCATCCTCCTCCCTACTCCTACTAA

mRNA sequence

ATGGCTTCAACAACTTTGGTTGCTTGGGAGAAGGTTATCTTCTTTGCTTTGCTTCTTCTTGCTTTCAATGTTTCGGCGAGAGAATTCGTCGCTTGCACAGCCCGCGAGTCGTTGTTGGTGACGAAGACGAATGGTGTGATGGGCAGGAGATTAATTGTTCGACAGCTGGATATCCCTAGGAAAGGAAATTATTCTCCTCCTCCTCCTCGTCGTCATCCTCCTCCCTACTCCTACTAA

Coding sequence (CDS)

ATGGCTTCAACAACTTTGGTTGCTTGGGAGAAGGTTATCTTCTTTGCTTTGCTTCTTCTTGCTTTCAATGTTTCGGCGAGAGAATTCGTCGCTTGCACAGCCCGCGAGTCGTTGTTGGTGACGAAGACGAATGGTGTGATGGGCAGGAGATTAATTGTTCGACAGCTGGATATCCCTAGGAAAGGAAATTATTCTCCTCCTCCTCCTCGTCGTCATCCTCCTCCCTACTCCTACTAA

Protein sequence

MASTTLVAWEKVIFFALLLLAFNVSAREFVACTARESLLVTKTNGVMGRRLIVRQLDIPRKGNYSPPPPRRHPPPYSY
Homology
[Close]
BLAST of Cla006276 vs. TrEMBL
Match: A0A0A0L5K7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G175610 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.5e-11
Identity = 43/71 (60.56%), Postives = 51/71 (71.83%), Query Frame = 1 

Query: 1  MASTTL--VAWEKVI-FFALLLLAFNVSAREFVACTARESLLVTKTNGVMGRRLIVRQLD 60
          MA+ T+  VAW+KVI FF LLLLA+N+SARE VA T  E  L T+ N V+ RRL VRQLD
Sbjct: 1  MATATIASVAWKKVIIFFTLLLLAYNISARELVARTTCEPSLTTEMNDVIDRRLFVRQLD 60

Query: 61 IPRKGNYSPPP 69
             +GNY PPP
Sbjct: 61 TSWRGNYFPPP 71

[Close]
BLAST of Cla006276 vs. TrEMBL
Match: A0A0A0LB11_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G175620 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.4e-09
Identity = 39/67 (58.21%), Postives = 46/67 (68.66%), Query Frame = 1 

Query: 12 VIFFALLLLAFNVSAREFVACTARESLLVTKTNGVMGRRLIVRQLDIPRKGNYSPPPPRR 71
          ++FF+LLLLAFN S    +A  ARE + V +TN  MGR+L  RQLD   KGNYSPPPP R
Sbjct: 7  LVFFSLLLLAFNFSTG-VLARPAREMVAV-ETNWEMGRKLTARQLDTSWKGNYSPPPPNR 66

Query: 72 HPPPYSY 79
           PPP  Y
Sbjct: 67 PPPPPPY 71

[Close]
BLAST of Cla006276 vs. NCBI nr
Match: gi|700202127|gb|KGN57260.1| (hypothetical protein Csa_3G175610 [Cucumis sativus])

HSP 1 Score: 76.6 bits (187), Expect = 2.1e-11
Identity = 43/71 (60.56%), Postives = 51/71 (71.83%), Query Frame = 1 

Query: 1  MASTTL--VAWEKVI-FFALLLLAFNVSAREFVACTARESLLVTKTNGVMGRRLIVRQLD 60
          MA+ T+  VAW+KVI FF LLLLA+N+SARE VA T  E  L T+ N V+ RRL VRQLD
Sbjct: 1  MATATIASVAWKKVIIFFTLLLLAYNISARELVARTTCEPSLTTEMNDVIDRRLFVRQLD 60

Query: 61 IPRKGNYSPPP 69
             +GNY PPP
Sbjct: 61 TSWRGNYFPPP 71

[Close]
BLAST of Cla006276 vs. NCBI nr
Match: gi|700202128|gb|KGN57261.1| (hypothetical protein Csa_3G175620 [Cucumis sativus])

HSP 1 Score: 70.1 bits (170), Expect = 2.0e-09
Identity = 39/67 (58.21%), Postives = 46/67 (68.66%), Query Frame = 1 

Query: 12 VIFFALLLLAFNVSAREFVACTARESLLVTKTNGVMGRRLIVRQLDIPRKGNYSPPPPRR 71
          ++FF+LLLLAFN S    +A  ARE + V +TN  MGR+L  RQLD   KGNYSPPPP R
Sbjct: 7  LVFFSLLLLAFNFSTG-VLARPAREMVAV-ETNWEMGRKLTARQLDTSWKGNYSPPPPNR 66

Query: 72 HPPPYSY 79
           PPP  Y
Sbjct: 67 PPPPPPY 71

The following BLAST results are available for this feature:
BLAST of Cla006276 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L5K7_CUCSA1.5e-1160.56Uncharacterized protein OS=Cucumis sativus GN=Csa_3G175610 PE=4 SV=1[more]
A0A0A0LB11_CUCSA1.4e-0958.21Uncharacterized protein OS=Cucumis sativus GN=Csa_3G175620 PE=4 SV=1[more]
BLAST of Cla006276 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202127|gb|KGN57260.1|2.1e-1160.56hypothetical protein Csa_3G175610 [Cucumis sativus][more]
gi|700202128|gb|KGN57261.1|2.0e-0958.21hypothetical protein Csa_3G175620 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU10354watermelon EST collection version 2.0transcribed_cluster
WMU65188watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla006276Cla006276.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU65188WMU65188transcribed_cluster
WMU10354WMU10354transcribed_cluster