MELO3C031780.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C031780.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Unknown protein
Location	chr06 : 6229395 .. 6230194 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAAAGTCCTGTGGAGACCAAAATTTTCTAATTTGTTTCCTTGAAAGTGAAGCCCTCCCCGTTGGCTTATTGGGTTAATTAGTTAATAAATACACACAATCATCAAAGTTCCTCTACATCTACACTAACAATCACCCTCCTTTGTAAGCTTTTTACAATCAAAACTAATGGCTGCAACAACTTTGGTCGCTTGGAAGAAAGTTATCTTCTTTACTTTGCTTCTTCTTGCTTACAACATTTCTGCGAGAGAACTTATTGCTCGCACGACCCGTAAGTCTTTTTCTCTTTCCGTAATACCCTTATGACAATATTCACTGTATAATCAAAGCATCATCGGTGATTTAACCGATTCCAAAAAATTTTTTACGTCTTTTGTTTTTGATAAATAGGTGAACCATCGCTGACGGGAGAGATGAATGATGTGATAGATCGAAGATTAGTAGTTAGACAATTGGATATCACTTGGAGAGGAAATTATTCTCCTCCTCCTCCCCGTCGTTTTCCTCCTCCCCTCTCCTCCCTCCTCCTCTCCTCCTAAGAGCGCCAAGGTCTTGATTTGAACAATGGGATGTTTTTATTTTTAATTACCCTTCTTTGGTCTTTTTTTTGGGAGGATCTACGCAAGTTGTATGAATCAGTTATTATCCCTTATAAGGATGTAGCCATTTAATGGCGTTGTGTGTGATTTTGGTGGAGTTTAACTACAGCCACAAACACTTTTTGATGTTAAATTCAATAGTCTTGATATAATAATATTTAATCAAAGTTTAATAACATACACTTCTGATTTATTGAGCTT

mRNA sequence

CAAAAAGTCCTGTGGAGACCAAAATTTTCTAATTTGTTTCCTTGAAAGTGAAGCCCTCCCCGTTGGCTTATTGGGTTAATTAGTTAATAAATACACACAATCATCAAAGTTCCTCTACATCTACACTAACAATCACCCTCCTTTGTAAGCTTTTTACAATCAAAACTAATGGCTGCAACAACTTTGGTCGCTTGGAAGAAAGTTATCTTCTTTACTTTGCTTCTTCTTGCTTACAACATTTCTGCGAGAGAACTTATTGCTCGCACGACCCGTGAACCATCGCTGACGGGAGAGATGAATGATGTGATAGATCGAAGATTAGTAGTTAGACAATTGGATATCACTTGGAGAGGAAATTATTCTCCTCCTCCTCCCCGTCGTTTTCCTCCTCCCCTCTCCTCCCTCCTCCTCTCCTCCTAAGAGCGCCAAGGTCTTGATTTGAACAATGGGATGTTTTTATTTTTAATTACCCTTCTTTGGTCTTTTTTTTGGGAGGATCTACGCAAGTTGTATGAATCAGTTATTATCCCTTATAAGGATGTAGCCATTTAATGGCGTTGTGTGTGATTTTGGTGGAGTTTAACTACAGCCACAAACACTTTTTGATGTTAAATTCAATAGTCTTGATATAATAATATTTAATCAAAGTTTAATAACATACACTTCTGATTTATTGAGCTT

Coding sequence (CDS)

ATGGCTGCAACAACTTTGGTCGCTTGGAAGAAAGTTATCTTCTTTACTTTGCTTCTTCTTGCTTACAACATTTCTGCGAGAGAACTTATTGCTCGCACGACCCGTGAACCATCGCTGACGGGAGAGATGAATGATGTGATAGATCGAAGATTAGTAGTTAGACAATTGGATATCACTTGGAGAGGAAATTATTCTCCTCCTCCTCCCCGTCGTTTTCCTCCTCCCCTCTCCTCCCTCCTCCTCTCCTCCTAA

Protein sequence

MAATTLVAWKKVIFFTLLLLAYNISARELIARTTREPSLTGEMNDVIDRRLVVRQLDITWRGNYSPPPPRRFPPPLSSLLLSS

Homology

[Close]

BLAST of MELO3C031780.2 vs. NCBI nr
Match: KGN57260.1 (hypothetical protein Csa_3G175610 [Cucumis sativus])

HSP 1 Score: 102.4 bits (254), Expect = 7.3e-19
Identity = 56/69 (81.16%), Postives = 59/69 (85.51%), Query Frame = 0


Query: 1  MAATTL--VAWKKV-IFFTLLLLAYNISARELIARTTREPSLTGEMNDVIDRRLVVRQLD 60
          MA  T+  VAWKKV IFFTLLLLAYNISAREL+ARTT EPSLT EMNDVIDRRL VRQLD
Sbjct: 1  MATATIASVAWKKVIIFFTLLLLAYNISARELVARTTCEPSLTTEMNDVIDRRLFVRQLD 60

Query: 61 ITWRGNYSP 67
           +WRGNY P
Sbjct: 61 TSWRGNYFP 69

[Close]

BLAST of MELO3C031780.2 vs. TrEMBL
Match: tr|A0A0A0L5K7|A0A0A0L5K7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175610 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 4.9e-19
Identity = 56/69 (81.16%), Postives = 59/69 (85.51%), Query Frame = 0


Query: 1  MAATTL--VAWKKV-IFFTLLLLAYNISARELIARTTREPSLTGEMNDVIDRRLVVRQLD 60
          MA  T+  VAWKKV IFFTLLLLAYNISAREL+ARTT EPSLT EMNDVIDRRL VRQLD
Sbjct: 1  MATATIASVAWKKVIIFFTLLLLAYNISARELVARTTCEPSLTTEMNDVIDRRLFVRQLD 60

Query: 61 ITWRGNYSP 67
           +WRGNY P
Sbjct: 61 TSWRGNYFP 69

The following BLAST results are available for this feature:

BLAST of MELO3C031780.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57260.1	7.3e-19	81.16	hypothetical protein Csa_3G175610 [Cucumis sativus]	[more]

BLAST of MELO3C031780.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C031780.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C031780.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L5K7\|A0A0A0L5K7_CUCSA	4.9e-19	81.16	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175610 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C031780.2.1	MELO3C031780.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..83

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C031780.2	Csa3G175610	Cucumber (Chinese Long) v2	cumedB223
MELO3C031780.2	CSPI03G15870	Wild cucumber (PI 183967)	cpimedB224
MELO3C031780.2	Lsi05G013300	Bottle gourd (USVL1VR-Ls)	lsimedB397
MELO3C031780.2	Cla006276	Watermelon (97103) v1	medwmB447
MELO3C031780.2	ClCG05G007320	Watermelon (Charleston Gray)	medwcgB416
MELO3C031780.2	Cla97C05G089070	Watermelon (97103) v2	medwmbB423
MELO3C031780.2	Bhi01G000888	Wax gourd	medwgoB530
MELO3C031780.2	Carg16743	Silver-seed gourd	carmedB0869
MELO3C031780.2	Carg08017	Silver-seed gourd	carmedB0385
MELO3C031780.2	CsaV3_3G016080	Cucumber (Chinese Long) v3	cucmedB230

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C031780.2	Cucumber (Gy14) v2	cgybmedB201
MELO3C031780.2	Cucumber (Gy14) v1	cgymedB432
MELO3C031780.2	Cucurbita maxima (Rimu)	cmamedB344
MELO3C031780.2	Cucurbita maxima (Rimu)	cmamedB779
MELO3C031780.2	Cucurbita moschata (Rifu)	cmomedB331
MELO3C031780.2	Cucurbita moschata (Rifu)	cmomedB777
MELO3C031780.2	Cucurbita pepo (Zucchini)	cpemedB233
MELO3C031780.2	Cucurbita pepo (Zucchini)	cpemedB483