ClCG05G007320 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG05G007320
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr05 : 7666935 .. 7668828 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTTATTGTGTTAATTAGTTAATATTATACACACAAACACCAAATTAAAGTCCCTCTACTTCCACACATTCCTTTCTGAGCTTTCTACAATCACAAACTAATGGCTTCAACAACTTTGGTTGCTTGGGAGAAGGTTATCTTCTTTGCTTTGCTTCTTCTTGCTTTCAATGTTTCGGCGAGAGAATTCGTCGCTTGCACAGCCCGTAAGTCTTTCTTTTTCCATGATATCTTTCTAACAATATTGTTTTATAAATTTACTACAACCTATAACGTCGGAAGTATCAATTTAAACTTTTGAGTTGATAGGCGAGTCGTTGTTGGTGACGAAGACGAATGGTGTGATGGGCAGGAGATTAATTGTTCGACAGCTGGATATCCCTAGGAAAGGAAATTATTCTCCTCCTCCTCCTCGTCGTCATCCTCCTCCCTACTCCTACTAAAGGCCAATTTCCTTTGGCCTTGGTTGGGTTTGGATTAATAATTAAGGACCTCCACAAGTTGTATGAATCTCTTTTCCTTTTAAGGATGTATCTCTTCTAATGGTGTTGTGTGTGATTTTGGTGGAGTTTAACGGTACAACTACAAATACTTTTCTTATGTTAAATTCAGTCTTAAATAATAATCAAAGTTCAATTAGTACCCTACTTTTGTTGGGCGTATGATATGTGATATCGTCTACTCGCATTCTAATTTGTAAAATTATGTTCAACTTTTCCTTTGGATTTGTTATCTTGGCACTTTGAATAACTAAGTACGAGATCTAGGTCTAAGGTGACATGGAGGCTTCAGGCCGACATCTCGAAACCGAAATGGTGTACAAATTATATATTATTTACAAATTTGACCCGTAGATCAGTTTAGAGGGTGCACTATTTAAACCCTCTAAGGCAACTTTACCAGCACATTTGCAATATTGTCAAATTCCATTCAAATACTGTCAAATATTTTGGCATTCAACAAAACCAAAAACAAATATCTAGAATAGCGTGGGGTCAGGACAGACATGAAAAGCTAGAACAGAGTTTCAACCACACTTAAAATGGCCGACTTGTTTGACTCTTTTAAGTTCACATGTCGATGGAAGAATTAGACTGGAGTGGGAGTTGTAATAATTAGCAGCCACAGCCACAATTCTTCTGTGTTACCATCAATTTCAGTTTCACCTTAAATTTTCCTATAAATGAATACCAAAGTAAATAAAATTAGCTATTCAGCTACCTTCAAACCTTGTTAATGCTCTCAAAAATGGCTTCCCCCACCAGGATTTCCCTTGTGTTGAAGCTTCTTTTCTTTGCTTTGCTTCTCATTTCCTCTACTGTTTCTGCAACCAACAACATTCCTTTGCTCCACAACCCTCCTATTCGTAAGTTGTCTTTAATTACTGTATGATTTTCCCACACAATAATATAGCCTCTTTTTGGACTGTGTTTGCTAAACCGAATCCAATTGTGAACACCCGAATAAAATATAATTTAATCAATGATGAATATATAATGTTGCACTAATTTATGATTAATCTATTTTACACAAGCAAGACATGAACCACTTAGTATACTTCTCTAGAAAATAAATGATAAGTTAATTTGGTAAGAATAGGGTATCATTTTGAATTTTTTTAAATAATCGATTGACAAAAAAAAAAAACTTAGGTTGTTAAGTGAAGATAAATTCAATATTATATCATATAATAAATTTTTTACAAGGTTTTTATAAAGTTTCAGGTAAAATGGTTGGAAAGGTTGTGGCTGTACCAAAAGTAAAGGAACCAACTTCTGATGATGTCCCATGGGGGGGAGGCTATGTTCCTCCAATCTTAATCAACCCATGATGTGAGATTTATAATTGCTTAATTGGATGAATCAGCTGTGTTTTTCTTGTGTTAGCTATTTTGGGG

mRNA sequence

GGTTATTGTGTTAATTAGTTAATATTATACACACAAACACCAAATTAAAGTCCCTCTACTTCCACACATTCCTTTCTGAGCTTTCTACAATCACAAACTAATGGCTTCAACAACTTTGGTTGCTTGGGAGAAGGTTATCTTCTTTGCTTTGCTTCTTCTTGCTTTCAATGTTTCGGCGAGAGAATTCGTCGCTTGCACAGCCCGCGAGTCGTTGTTGGTGACGAAGACGAATGGTGTGATGGGCAGGAGATTAATTGTTCGACAGCTGGATATCCCTAGGAAAGGAAATTATTCTCCTCCTCCTCCTCGTCGTCATCCTCCTCCCTACTCCTACTAAAGGCCAATTTCCTTTGGCCTTGGTTGGGTTTGGATTAATAATTAAGGACCTCCACAAGTTGTAAAATGGTTGGAAAGGTTGTGGCTGTACCAAAAGTAAAGGAACCAACTTCTGATGATGTCCCATGGGGGGGAGGCTATGTTCCTCCAATCTTAATCAACCCATGATGTGAGATTTATAATTGCTTAATTGGATGAATCAGCTGTGTTTTTCTTGTGTTAGCTATTTTGGGG

Coding sequence (CDS)

ATGGCTTCAACAACTTTGGTTGCTTGGGAGAAGGTTATCTTCTTTGCTTTGCTTCTTCTTGCTTTCAATGTTTCGGCGAGAGAATTCGTCGCTTGCACAGCCCGCGAGTCGTTGTTGGTGACGAAGACGAATGGTGTGATGGGCAGGAGATTAATTGTTCGACAGCTGGATATCCCTAGGAAAGGAAATTATTCTCCTCCTCCTCCTCGTCGTCATCCTCCTCCCTACTCCTACTAA

Protein sequence

MASTTLVAWEKVIFFALLLLAFNVSAREFVACTARESLLVTKTNGVMGRRLIVRQLDIPRKGNYSPPPPRRHPPPYSY

Homology

[Close]

BLAST of ClCG05G007320 vs. TrEMBL
Match: A0A0A0L5K7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G175610 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.5e-11
Identity = 43/71 (60.56%), Postives = 51/71 (71.83%), Query Frame = 1


Query: 1  MASTTL--VAWEKVI-FFALLLLAFNVSAREFVACTARESLLVTKTNGVMGRRLIVRQLD 60
          MA+ T+  VAW+KVI FF LLLLA+N+SARE VA T  E  L T+ N V+ RRL VRQLD
Sbjct: 1  MATATIASVAWKKVIIFFTLLLLAYNISARELVARTTCEPSLTTEMNDVIDRRLFVRQLD 60

Query: 61 IPRKGNYSPPP 69
             +GNY PPP
Sbjct: 61 TSWRGNYFPPP 71

[Close]

BLAST of ClCG05G007320 vs. TrEMBL
Match: A0A0A0LB11_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G175620 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.4e-09
Identity = 39/67 (58.21%), Postives = 46/67 (68.66%), Query Frame = 1


Query: 12 VIFFALLLLAFNVSAREFVACTARESLLVTKTNGVMGRRLIVRQLDIPRKGNYSPPPPRR 71
          ++FF+LLLLAFN S    +A  ARE + V +TN  MGR+L  RQLD   KGNYSPPPP R
Sbjct: 7  LVFFSLLLLAFNFSTG-VLARPAREMVAV-ETNWEMGRKLTARQLDTSWKGNYSPPPPNR 66

Query: 72 HPPPYSY 79
           PPP  Y
Sbjct: 67 PPPPPPY 71

[Close]

BLAST of ClCG05G007320 vs. NCBI nr
Match: gi|700202127|gb|KGN57260.1| (hypothetical protein Csa_3G175610 [Cucumis sativus])

HSP 1 Score: 76.6 bits (187), Expect = 2.1e-11
Identity = 43/71 (60.56%), Postives = 51/71 (71.83%), Query Frame = 1


Query: 1  MASTTL--VAWEKVI-FFALLLLAFNVSAREFVACTARESLLVTKTNGVMGRRLIVRQLD 60
          MA+ T+  VAW+KVI FF LLLLA+N+SARE VA T  E  L T+ N V+ RRL VRQLD
Sbjct: 1  MATATIASVAWKKVIIFFTLLLLAYNISARELVARTTCEPSLTTEMNDVIDRRLFVRQLD 60

Query: 61 IPRKGNYSPPP 69
             +GNY PPP
Sbjct: 61 TSWRGNYFPPP 71

[Close]

BLAST of ClCG05G007320 vs. NCBI nr
Match: gi|700202128|gb|KGN57261.1| (hypothetical protein Csa_3G175620 [Cucumis sativus])

HSP 1 Score: 70.1 bits (170), Expect = 2.0e-09
Identity = 39/67 (58.21%), Postives = 46/67 (68.66%), Query Frame = 1


Query: 12 VIFFALLLLAFNVSAREFVACTARESLLVTKTNGVMGRRLIVRQLDIPRKGNYSPPPPRR 71
          ++FF+LLLLAFN S    +A  ARE + V +TN  MGR+L  RQLD   KGNYSPPPP R
Sbjct: 7  LVFFSLLLLAFNFSTG-VLARPAREMVAV-ETNWEMGRKLTARQLDTSWKGNYSPPPPNR 66

Query: 72 HPPPYSY 79
           PPP  Y
Sbjct: 67 PPPPPPY 71

The following BLAST results are available for this feature:

BLAST of ClCG05G007320 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5K7_CUCSA	1.5e-11	60.56	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G175610 PE=4 SV=1	[more]
A0A0A0LB11_CUCSA	1.4e-09	58.21	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G175620 PE=4 SV=1	[more]

BLAST of ClCG05G007320 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202127\|gb\|KGN57260.1\|	2.1e-11	60.56	hypothetical protein Csa_3G175610 [Cucumis sativus]	[more]
gi\|700202128\|gb\|KGN57261.1\|	2.0e-09	58.21	hypothetical protein Csa_3G175620 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G007320.1	ClCG05G007320.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG05G007320	Csa3G175610	Cucumber (Chinese Long) v2	cuwcgB222
ClCG05G007320	Cla006276	Watermelon (97103) v1	wcgwmB286
ClCG05G007320	Cla97C05G089070	Watermelon (97103) v2	wcgwmbB229
ClCG05G007320	Bhi01G000888	Wax gourd	wcgwgoB426
ClCG05G007320	CSPI03G15870	Wild cucumber (PI 183967)	cpiwcgB226
ClCG05G007320	Lsi05G013300	Bottle gourd (USVL1VR-Ls)	lsiwcgB336
ClCG05G007320	Cp4.1LG01g03830	Cucurbita pepo (Zucchini)	cpewcgB399
ClCG05G007320	MELO3C031780.2	Melon (DHL92) v3.6.1	medwcgB416
ClCG05G007320	Carg08017	Silver-seed gourd	carwcgB0372
ClCG05G007320	Carg16743	Silver-seed gourd	carwcgB0847

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG05G007320	Cucumber (Chinese Long) v3	cucwcgB225
ClCG05G007320	Cucumber (Gy14) v1	cgywcgB451
ClCG05G007320	Cucurbita maxima (Rimu)	cmawcgB296
ClCG05G007320	Cucurbita maxima (Rimu)	cmawcgB663
ClCG05G007320	Cucurbita moschata (Rifu)	cmowcgB290
ClCG05G007320	Cucurbita moschata (Rifu)	cmowcgB664
ClCG05G007320	Melon (DHL92) v3.5.1	mewcgB427
ClCG05G007320	Cucurbita pepo (Zucchini)	cpewcgB207
ClCG05G007320	Cucumber (Gy14) v2	cgybwcgB203